Borrelia recurrentis A1 plasmid pl6, complete sequence.
type: Entry
definition: Borrelia recurrentis A1 plasmid pl6, complete sequence.
sequence version: NC_011263.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_011263.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603586
keyword: RefSeq
source: Borrelia recurrentis A1
organism: Borrelia recurrentis A1
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001000.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6131
topology: linear
so has quality: SO_0000987
location: 1..6131
location: region:1-6131:1
RO_0002162: 412418

NC_011263
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603586
type: BioSample
SIO_000068: biosample

1
title: The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
author: Lescot, M.
author: Audic, S.
author: Robert, C.
author: Nguyen, T.
author: Blanc, g.
author: Cutler, S.J.
author: Wincker, P.
author: Couloux, A.
author: Claverie, J.-M.
author: Raoult, D.
author: Drancourt, M.
journal: PLoS 4 (9), e1000185 (2008)
comments: Publication Status: Online-Only

2
title: Direct Submission
author: Audic, S.
journal: Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6131:1
position: 6131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6131:1:source
so part of: sequence
organism: Borrelia recurrentis A1
mol type: genomic DNA
strain: A1
plasmid: pl6

412418
type: Taxonomy
SIO_000068: taxonomy

BRE_RS05790
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05790
old locus tag: BRE_7001
so part of: sequence
location: complement(166..681)
location: region:166-681:-1
so has part: feature:166-681:-1:exon
subclass of: SO_0000010

position:166:-1
position: 166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:681:-1
position: 681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166-681:-1:exon

BRE_RS05790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05790
old locus tag: BRE_7001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683072.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKLDILNTIKSRVGSVTQVEDSSDKERAMLRYRQLKEEIRARTLEEAVNKVELSKALYEIKKNKLYKFDGYDNFYEFCLDYKFSRTMIYRYVKIGAYLERESISEQDIMQSSLNKIINDIRVKRDSSYCKPVVVKFNLKDKEKQLVLIKNKQKLEKFLLKCLLDNWESFIV
SIO_010081: BRE_RS05790
subclass of: SO_0000673
so part of: BRE_RS05790
location: complement(166..681)
location: region:166-681:-1
so has part: feature:166-681:-1:exon

WP_012539779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166-681:-1:exon

BRE_RS05795
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05795
old locus tag: BRE_7002
so part of: sequence
location: complement(744..1505)
location: region:744-1505:-1
so has part: feature:744-1505:-1:exon
subclass of: SO_0000010

position:744:-1
position: 744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1505:-1
position: 1505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:744-1505:-1:exon

BRE_RS05795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05795
old locus tag: BRE_7002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRDIIAISSIKGGVGKSITAIMLGYIFSSKKYRTLLIDIDSQASVTSYFLPYFENKIDIREYNIYEVLKSKKSFMSIVHKITDDLHFAPSHIKLSQFSGENIIGQEYKLKTILTPYFEEYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYEILKSKMQEIINAYQKQDFKNYYVIQTLYEENRKIKKEFFYSLQQLYKEYVPIKIHRSAAIQKMITYRLEPQKDERYYNEYLRVAEVIEGVYNM
SIO_010081: BRE_RS05795
subclass of: SO_0000673
so part of: BRE_RS05795
location: complement(744..1505)
location: region:744-1505:-1
so has part: feature:744-1505:-1:exon

WP_012539780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:744-1505:-1:exon

BRE_RS05800
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05800
so part of: sequence
location: complement(1505..1774)
location: region:1505-1774:-1
so has part: feature:1505-1774:-1:exon
subclass of: SO_0000010

position:1774:-1
position: 1774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1505-1774:-1:exon

BRE_RS05800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEKMKMHLKNFFIEYEGKKYYTPLFLANINNISYFTIKNKIKKLNIAIKAKDIGVVNSLSEELLVSEDNLDKLFYDKRFKCLDSRGIK
SIO_010081: BRE_RS05800
subclass of: SO_0000673
so part of: BRE_RS05800
location: complement(1505..1774)
location: region:1505-1774:-1
so has part: feature:1505-1774:-1:exon

WP_014683071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1505-1774:-1:exon

BRE_RS05805
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05805
so part of: sequence
location: complement(1795..2007)
location: region:1795-2007:-1
so has part: feature:1795-2007:-1:exon
subclass of: SO_0000010

position:1795:-1
position: 1795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2007:-1
position: 2007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1795-2007:-1:exon

BRE_RS05805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05805
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRITLNFLNSLKNLKEFSKEMGYSDSSYLSRYIKKNKIEGIISSKDLFFKKRELLLSEEAQNFIKSKLKK
SIO_010081: BRE_RS05805
subclass of: SO_0000673
so part of: BRE_RS05805
location: complement(1795..2007)
location: region:1795-2007:-1
so has part: feature:1795-2007:-1:exon

WP_014683070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1795-2007:-1:exon

BRE_RS05810
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05810
old locus tag: BRE_7003
so part of: sequence
location: 2242..2766
location: region:2242-2766:1
so has part: feature:2242-2766:1:exon
subclass of: SO_0000010

position:2242:1
position: 2242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2766:1
position: 2766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2242-2766:1:exon

BRE_RS05810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05810
old locus tag: BRE_7003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLNFFLYNNSNLKKNQVRLIKLISVLKYLNKNRLGYNQQDILNLINFFLKKEGYAVIKMKTLQKDLGFMKKHHIIKAFIIRLGEYRGSKIKYIPKKNAYRILGQVLDATEELLEKTFNIIYKLSKEEKEKNKNELKNSTKNSSVYNTIYNNINNIKKKMKIKQQKQQSNKKT
SIO_010081: BRE_RS05810
subclass of: SO_0000673
so part of: BRE_RS05810
location: 2242..2766
location: region:2242-2766:1
so has part: feature:2242-2766:1:exon

WP_012539781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2242-2766:1:exon

BRE_RS06765
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06765
old locus tag: BRE_7004
so part of: sequence
location: complement(4414..4773)
location: region:4414-4773:-1
so has part: feature:4414-4773:-1:exon
subclass of: SO_0000010

position:4414:-1
position: 4414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4773:-1
position: 4773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4414-4773:-1:exon

BRE_RS06765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06765
old locus tag: BRE_7004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIKQNNVQKSKLPMMLNHDKHITKGLQEIFFENSQYEANYKSKVNGFIVDFFKIPKSLKNKYKVNITCLSNPDLPFGNIALNCINTFKLIVDIVNMQTGKTYDYDEFISSTETDKML
SIO_010081: BRE_RS06765
subclass of: SO_0000673
so part of: BRE_RS06765
location: complement(4414..4773)
location: region:4414-4773:-1
so has part: feature:4414-4773:-1:exon

WP_049752043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4414-4773:-1:exon