Borrelia recurrentis A1 plasmid pl53, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP000999.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012539666.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683343.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014074302.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539720.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539700.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683349.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683350.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_015633354.1
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539765.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539553.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF036421.2
COORDINATES: protein motif:HMM:NF015211.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539229.1
COORDINATES: protein motif:HMM:NF015275.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539656.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539655.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539836.1
COORDINATES: protein motif:HMM:NF015096.2
COORDINATES: protein motif:HMM:NF015173.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539227.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014540923.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539612.1
COORDINATES: protein motif:HMM:NF016524.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539611.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683270.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696694.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023172.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014023174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486293.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687078.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539703.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537768.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539497.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539509.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696701.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539493.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683299.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539515.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687021.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539585.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683354.1