Borrelia recurrentis A1 plasmid pl37, complete sequence.
type: Entry
definition: Borrelia recurrentis A1 plasmid pl37, complete sequence.
sequence version: NC_011258.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_011258.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603586
keyword: RefSeq
source: Borrelia recurrentis A1
organism: Borrelia recurrentis A1
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000998.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 36869
topology: linear
so has quality: SO_0000987
location: 1..36869
location: region:1-36869:1
RO_0002162: 412418

NC_011258
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603586
type: BioSample
SIO_000068: biosample

1
title: The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
author: Lescot, M.
author: Audic, S.
author: Robert, C.
author: Nguyen, T.
author: Blanc, g.
author: Cutler, S.J.
author: Wincker, P.
author: Couloux, A.
author: Claverie, J.-M.
author: Raoult, D.
author: Drancourt, M.
journal: PLoS 4 (9), e1000185 (2008)
comments: Publication Status: Online-Only

2
title: Direct Submission
author: Audic, S.
journal: Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:36869:1
position: 36869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36869:1:source
so part of: sequence
organism: Borrelia recurrentis A1
mol type: genomic DNA
strain: A1
plasmid: pl37

412418
type: Taxonomy
SIO_000068: taxonomy

BRE_RS05330
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05330
old locus tag: BRE_3001
so part of: sequence
location: <1..579
location: region:1-579:1
so has part: feature:1-579:1:exon
subclass of: SO_0000010

position:579:1
position: 579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-579:1:exon

BRE_RS05330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05330
old locus tag: BRE_3001
inference: COORDINATES: protein motif:HMM:NF033729.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: NNILKNIITISALTAFMFTSCNTDGTLAIPTSGHKDGASAKTSGDGPSNSPKPFDIDNVGNVDINNDVNYEAKQLADIITELKDKVAAEAKVNEGQKEPDDTQYGLKDTVFKLIKDDKNKTYDDAEKQDTRYRFYGSLSWKKETIEGLGEVLTEIGKNATYKDTWPKNLVGVGEKVQGVMQVAFKEIEDKKR
SIO_010081: BRE_RS05330
subclass of: SO_0000673
so part of: BRE_RS05330
location: <1..579
location: region:1-579:1
so has part: feature:1-579:1:exon

WP_041178247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-579:1:exon

BRE_RS05335
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05335
old locus tag: BRE_3002
so part of: sequence
location: 1073..1924
location: region:1073-1924:1
so has part: feature:1073-1924:1:exon
subclass of: SO_0000010

position:1073:1
position: 1073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1924:1
position: 1924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1073-1924:1:exon

BRE_RS05335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05335
old locus tag: BRE_3002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537728.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MRKNFFTNIFILFLITLIMAGCRPLNKEGGYGGAGQRDGASKSQEIDLIPQLIDAYSQLIQSEEDDEVNGDVQKNLQSDKEKTELIALIKEKVKTEIEVLTKYSNKIEDNEQYGMKWGVFKFLIEDNNKRNIQSAENTLARKQLYASLEWNEDRLRKFGTIMNEVEKCDRVVAKTILETGMNFVQGKFENAIISIDDKSQDLDNLILKELKDIKKNLDLIDSFRKQWISSVDSIISEYDSNTGDIQKDSQALVNRVNTEYKEIFENKIDEIKKAVDDIQTILK
SIO_010081: BRE_RS05335
subclass of: SO_0000673
so part of: BRE_RS05335
location: 1073..1924
location: region:1073-1924:1
so has part: feature:1073-1924:1:exon

WP_012539688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1073-1924:1:exon

BRE_RS05340
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05340
old locus tag: BRE_3003
so part of: sequence
location: complement(2333..3325)
location: region:2333-3325:-1
so has part: feature:2333-3325:-1:exon
subclass of: SO_0000010

position:2333:-1
position: 2333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3325:-1
position: 3325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2333-3325:-1:exon

BRE_RS05340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05340
old locus tag: BRE_3003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537729.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREVKINLYLFVIITISCKSGDYVDGQENKKIDLSSKKIVTPAKKVIIPPPVVILSSALPVIKTEIPKPNPPVQNYNALDSKDKAYIRLKKSINQYKEQCKINPNQTIKNTEEIETLIKSLSDYEKTEEYNYIYTSLENDDHIIDSLKKVLEKLSSIYWYPPRYNNEANITYYEDDEEIPKATYKHYHEQMMVKSTTKIKQPKTKKYTGLLLSLLNKLFDMTFFTNNLLYKCLHDKNLAHFKSAEEINKIYDQLNDIMNKRKDVILKFKDQILLAEKHFDEVKMVDEIKKIVEPGKEVYSAYKAMYEAADGIWELKYNLGFMPFDKNIII
SIO_010081: BRE_RS05340
subclass of: SO_0000673
so part of: BRE_RS05340
location: complement(2333..3325)
location: region:2333-3325:-1
so has part: feature:2333-3325:-1:exon

WP_012539689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2333-3325:-1:exon

BRE_RS05345
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05345
so part of: sequence
location: complement(3708..4097)
location: region:3708-4097:-1
so has part: feature:3708-4097:-1:exon
subclass of: SO_0000010

position:3708:-1
position: 3708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4097:-1
position: 4097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3708-4097:-1:exon

BRE_RS05345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLEGYFPPSTQYEELMLPETNKPFSFEKLDFVTYEVYSKNVNLHSLLTENTKNLRIVRINKANHLYNNLVKNIKNFILNLNKGRNLLAKRKVNLTNYNNVLLDKSKLASGIMITNFNDDGTKLFIKKFL
SIO_010081: BRE_RS05345
subclass of: SO_0000673
so part of: BRE_RS05345
location: complement(3708..4097)
location: region:3708-4097:-1
so has part: feature:3708-4097:-1:exon

WP_041178248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3708-4097:-1:exon

BRE_RS06695
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06695
so part of: sequence
location: complement(5148..5615)
location: region:5148-5615:-1
so has part: feature:5148-5615:-1:exon
subclass of: SO_0000010

position:5148:-1
position: 5148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5615:-1
position: 5615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5148-5615:-1:exon

BRE_RS06695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06695
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQLKLIFEKLLLIPAERGETHYVGGTLKSLKIFANIIHEVIDENGKILSNDNLVSIKNSNDIEGIVSIKNYIDDMYLEMDKFLKLFENIITELIKLDTIEDIRKKMNPLYMLAHGLAHTEADNTNPFFVIFSDITNLSNKIEDRIVDLILFMDN
SIO_010081: BRE_RS06695
subclass of: SO_0000673
so part of: BRE_RS06695
location: complement(5148..5615)
location: region:5148-5615:-1
so has part: feature:5148-5615:-1:exon

WP_232212780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5148-5615:-1:exon

BRE_RS05360
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
gene: thyX
locus tag: BRE_RS05360
old locus tag: BRE_3005
so part of: sequence
location: complement(6191..7024)
location: region:6191-7024:-1
so has part: feature:6191-7024:-1:exon
subclass of: SO_0000010

position:6191:-1
position: 6191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7024:-1
position: 7024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6191-7024:-1:exon

BRE_RS05360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
gene: thyX
locus tag: BRE_RS05360
old locus tag: BRE_3005
EC number: 2.1.1.148
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537731.1
GO function: GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO process: GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent thymidylate synthase
translation: MNFKIEKENLLNIEHKVLDKGFIKLVDFMGSDERIIQAARISYRGESIKREDRELIDYLIRNEHTSPLEQVVFTFYIKAPIFVARQWMRHRTARINEVSSSYSLIREEFYVPLEENMNTQNVTDNQDNKKTECEFREEILNNLKENQKSSYKLYQNMINHNISKEISRIVLPLSLYTEWYWQIDLNNLFHFIKLRSALNASKEVAEHSSKEMREYAKVLLEIIEKIVPIATKSFKNHILKGCKLSYEEIVAIADALDISKLKLDANALKRLQDKLNI
SIO_010081: BRE_RS05360
subclass of: SO_0000673
so part of: BRE_RS05360
location: complement(6191..7024)
location: region:6191-7024:-1
so has part: feature:6191-7024:-1:exon

WP_012539690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6191-7024:-1:exon

BRE_RS05365
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05365
old locus tag: BRE_3006
so part of: sequence
location: complement(7263..8027)
location: region:7263-8027:-1
so has part: feature:7263-8027:-1:exon
subclass of: SO_0000010

position:7263:-1
position: 7263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8027:-1
position: 8027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7263-8027:-1:exon

BRE_RS05365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05365
old locus tag: BRE_3006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLICTLSVLMMLYCKNGRNNSEATDSILARDQSNKAETKPITPEEAYFELEIGVELLKDSLNFKPEVFDEYSFKDIFEIALGERNTEEFRHSVYYNLKYDTQTLNNLKTIADILMSKSNSDVKNFVLLIESLSHLPSYEFEVIDEQGKILNNNTLTALASSKDLEGLNELADMLYNMILQREQRFLTIQEIIKDASKSDTKEILLKKIEPLIKLDVMLNDKNCNNVKLCLDSKTLSDFPNKISDKVNNLMQQMK
SIO_010081: BRE_RS05365
subclass of: SO_0000673
so part of: BRE_RS05365
location: complement(7263..8027)
location: region:7263-8027:-1
so has part: feature:7263-8027:-1:exon

WP_012539691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7263-8027:-1:exon

BRE_RS05370
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05370
old locus tag: BRE_3007
so part of: sequence
location: 8348..9274
location: region:8348-9274:1
so has part: feature:8348-9274:1:exon
subclass of: SO_0000010

position:8348:1
position: 8348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9274:1
position: 9274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8348-9274:1:exon

BRE_RS05370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05370
old locus tag: BRE_3007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683087.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MKKNVLLSAFMLTLLFLLSCDLDVLNSLLIEAREKFLDENKNNKGLHLKDENQKDQEDVIIGFEGHKSMQQVVPGVGGQPVVSMKPVNSEISVLRWYPYNQEEKIEIKEEDLIPSTEDEKRAQAEIEKVKSVFKDFNFDQLIEEARKLKDEYVQLESSFYDTLLKLQSKIGSYRPLNRNSRIKKQELIRIKKQELMQVYNQLNNERNDIDMLMIKVDSGFNDRSSARYFFEKSQKTLKEAITERLKNERRNRWAKKGNIDVIARRARSEAESSLNQLESASSKIGEVMERKEEIEELIEGAKSVLGGF
SIO_010081: BRE_RS05370
subclass of: SO_0000673
so part of: BRE_RS05370
location: 8348..9274
location: region:8348-9274:1
so has part: feature:8348-9274:1:exon

WP_156768712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8348-9274:1:exon

BRE_RS05375
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05375
old locus tag: BRE_3008
so part of: sequence
location: 9822..10415
location: region:9822-10415:1
so has part: feature:9822-10415:1:exon
subclass of: SO_0000010

position:9822:1
position: 9822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10415:1
position: 10415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9822-10415:1:exon

BRE_RS05375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05375
old locus tag: BRE_3008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537734.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFVYSRVVLIFCIICFASCGLLKTKNKSRLLQDLKNIDLKSDWKDNLKLNNDELGILTFFIDALKDELPKTRASAAHFNIYLKGDLSKVEEYVKRFFLKLHDKGKVKELLGYIKYGRDNSPNVEGRDEDLGMDAKEHYRIEVRLASVFDKYFMFLNPPSSGPSAAPSAKVPFVGRDPENEVFNEIKRVCYEYRGSH
SIO_010081: BRE_RS05375
subclass of: SO_0000673
so part of: BRE_RS05375
location: 9822..10415
location: region:9822-10415:1
so has part: feature:9822-10415:1:exon

WP_012539693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9822-10415:1:exon

BRE_RS05380
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05380
old locus tag: BRE_3009
so part of: sequence
location: 10546..11742
location: region:10546-11742:1
so has part: feature:10546-11742:1:exon
subclass of: SO_0000010

position:10546:1
position: 10546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11742:1
position: 11742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10546-11742:1:exon

BRE_RS05380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05380
old locus tag: BRE_3009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539667.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ferrous iron transporter A
translation: MKFKTRYLSLGLLFSFISCDLIFDDKIKEKSLILFDKVNAVLDTSGQSVENVRSPKQKRKIVKKRLSTSGKKSANSNLAQDVLSDDITSGLQYDVKRDNAHMQKGLVLKDSLEKNDVFLNEKDLNVILSNTTSEFSKEDIQKQKYQDIESKNSITEISTGYNLDSHSRVVNGVLTSLNGESGELKETIESNAIEVNFTIDSDLGPKHISGSNTIAYTDIVEEEDYDQYYWEDDEDSWEDKELLKEEVRLDNRYKSYLESVRYNVDSAIDTIDKIYNNYILFSTKQTQMYSTRLNSVTKAKAKEEAKYFIKEKLERDLKTLLNYIQVSAKTATNFVYIKEIHAKQKLDKLEIEMKSLISKVQGQSNSYEAYKAIVSSILQMKDSLKIVQSSTDKNGPWY
SIO_010081: BRE_RS05380
subclass of: SO_0000673
so part of: BRE_RS05380
location: 10546..11742
location: region:10546-11742:1
so has part: feature:10546-11742:1:exon

WP_012539694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10546-11742:1:exon

BRE_RS05385
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05385
old locus tag: BRE_3010
pseudo: true
so part of: sequence
location: complement(<12560..12898)
location: region:12560-12898:-1
so has part: feature:12560-12898:-1:exon
subclass of: SO_0000010

position:12560:-1
position: 12560
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:12898:-1
position: 12898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12560-12898:-1:exon

BRE_RS05385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05385
old locus tag: BRE_3010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633354.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
SIO_010081: BRE_RS05385
subclass of: SO_0000673
so part of: BRE_RS05385
location: complement(<12560..12898)
location: region:12560-12898:-1
so has part: feature:12560-12898:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12560-12898:-1:exon

BRE_RS05390
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05390
old locus tag: BRE_3011
so part of: sequence
location: complement(13171..14163)
location: region:13171-14163:-1
so has part: feature:13171-14163:-1:exon
subclass of: SO_0000010

position:13171:-1
position: 13171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14163:-1
position: 14163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13171-14163:-1:exon

BRE_RS05390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05390
old locus tag: BRE_3011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539765.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MMMMVVMGCNSGGVKDPEKVFLSEMVNLGKGFLEVFVSFGDMITGTLGIKAETKKSEIGGYFSKIAETMKEVREKLEKILEENGKYEKVREKVGEFIGKISKIEEGAKEASKGANGDIIGNAKKGEDAVAASKDSVVSLVKGIKAIVEIVLGEKEGNAGNNIITEDKKDIGKLFGKKDGDRAQEAEAAKVSTSIGAVSGADILKAIAKSKENPVTDSANGIEKATDAAEIAVVPSVDDKKEIKEDTAKKDAIIAAGIALRGMAKEGKFAAKKDEDKSAHAVNGAVSSAVNKVLSTLVIAIRNTVDKGLKEINEVLGEIKQGEGVEAKVSK
SIO_010081: BRE_RS05390
subclass of: SO_0000673
so part of: BRE_RS05390
location: complement(13171..14163)
location: region:13171-14163:-1
so has part: feature:13171-14163:-1:exon

WP_012539695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13171-14163:-1:exon

BRE_RS06310
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06310
so part of: sequence
location: complement(14135..14290)
location: region:14135-14290:-1
so has part: feature:14135-14290:-1:exon
subclass of: SO_0000010

position:14135:-1
position: 14135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14290:-1
position: 14290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14135-14290:-1:exon

BRE_RS06310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLLIIDSCIDVVCCILLYFKDKLEEKKEVMQIENRIKRVVGVNDDDGGDGM
SIO_010081: BRE_RS06310
subclass of: SO_0000673
so part of: BRE_RS06310
location: complement(14135..14290)
location: region:14135-14290:-1
so has part: feature:14135-14290:-1:exon

WP_156768713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14135-14290:-1:exon

BRE_RS06315
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06315
so part of: sequence
location: 14353..14523
location: region:14353-14523:1
so has part: feature:14353-14523:1:exon
subclass of: SO_0000010

position:14353:1
position: 14353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14523:1
position: 14523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14353-14523:1:exon

BRE_RS06315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEQKLKIPVGLLFWYLLIHLNLNGNTIKNDTSHSDGKLKNLDVKDLPFSTTKPSK
SIO_010081: BRE_RS06315
subclass of: SO_0000673
so part of: BRE_RS06315
location: 14353..14523
location: region:14353-14523:1
so has part: feature:14353-14523:1:exon

WP_156768714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14353-14523:1:exon

BRE_RS05395
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05395
old locus tag: BRE_3012
so part of: sequence
location: complement(14770..15789)
location: region:14770-15789:-1
so has part: feature:14770-15789:-1:exon
subclass of: SO_0000010

position:14770:-1
position: 14770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15789:-1
position: 15789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14770-15789:-1:exon

BRE_RS05395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05395
old locus tag: BRE_3012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539551.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MMVMMGCNSGVLEAEQGKNKFLQSLVNVSNEFLNVFTSFWEMVGSVLGLNVNSKKSDVGKYFRTVQETVQGIKDGLNKIVNEMKEEKNPNAEATESAVKTLVESKLDKIIGGAKEASEAIGDASDPIGNVSDQNAGAVGIEVDKLVKGLKSIVDIVLKEGKNDAGDDKKASDGSTSRTGGNAGDGEAGKLFASANAGTAENAKKSAADAAKAVGAVTCADILQSMIEDNGEVVKLASSNAAVAAVNANKKDGVIAGGIALRAMAKDGKFAGSSDAASVDAKKTVKGAAVSALIKALDTLTVAIRKTVDLGLKNVKEAMKINANATSVLPDKDVSDAKNQ
SIO_010081: BRE_RS05395
subclass of: SO_0000673
so part of: BRE_RS05395
location: complement(14770..15789)
location: region:14770-15789:-1
so has part: feature:14770-15789:-1:exon

WP_232212781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14770-15789:-1:exon

BRE_RS05400
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05400
old locus tag: BRE_3013
so part of: sequence
location: 16063..16653
location: region:16063-16653:1
so has part: feature:16063-16653:1:exon
subclass of: SO_0000010

position:16063:1
position: 16063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16653:1
position: 16653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16063-16653:1:exon

BRE_RS05400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05400
old locus tag: BRE_3013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MAHPQPIITQQMVLKELIKAGINRDIAADLSYRYYKNELTYKDLEYLENNFNSKIEKIESILKSEITSAKLEVNNKIDKVKVELDNKIDNKFNELDNQINKVEDRLKSEITSTKIELNNKIDKVEDKLKSEIISTKIELNNKIDKIKIELDNKIDNKFNEIKNTGKLHNWMFGTIITLNIGIFLTLFSIIYSLLNK
SIO_010081: BRE_RS05400
subclass of: SO_0000673
so part of: BRE_RS05400
location: 16063..16653
location: region:16063-16653:1
so has part: feature:16063-16653:1:exon

WP_012539697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16063-16653:1:exon

BRE_RS05405
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05405
so part of: sequence
location: complement(16871..17074)
location: region:16871-17074:-1
so has part: feature:16871-17074:-1:exon
subclass of: SO_0000010

position:16871:-1
position: 16871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17074:-1
position: 17074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16871-17074:-1:exon

BRE_RS05405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05405
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLFIIIIIIIIIIIIDFLILRDKRIKGNDNAKKLKKTKDEDEGGNDFLGVFTFVGDMVDSVLKCIKF
SIO_010081: BRE_RS05405
subclass of: SO_0000673
so part of: BRE_RS05405
location: complement(16871..17074)
location: region:16871-17074:-1
so has part: feature:16871-17074:-1:exon

WP_156768715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16871-17074:-1:exon

BRE_RS05410
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05410
old locus tag: BRE_3014
pseudo: true
so part of: sequence
location: complement(17505..18047)
location: region:17505-18047:-1
so has part: feature:17505-18047:-1:exon
subclass of: SO_0000010

position:17505:-1
position: 17505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18047:-1
position: 18047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17505-18047:-1:exon

BRE_RS05410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05410
old locus tag: BRE_3014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023172.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
SIO_010081: BRE_RS05410
subclass of: SO_0000673
so part of: BRE_RS05410
location: complement(17505..18047)
location: region:17505-18047:-1
so has part: feature:17505-18047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17505-18047:-1:exon

BRE_RS05415
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05415
old locus tag: BRE_3015
so part of: sequence
location: complement(18123..18884)
location: region:18123-18884:-1
so has part: feature:18123-18884:-1:exon
subclass of: SO_0000010

position:18123:-1
position: 18123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18884:-1
position: 18884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18123-18884:-1:exon

BRE_RS05415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05415
old locus tag: BRE_3015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023173.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDKKEPEIISIANIKGGVGKSVLTIIFSYILKDMGKKILAIDFDPQNSLTSYFFKYVKSLSKNNIYALLKERPNFNLDKYLTKIHEFIYLIPSHPNLHLFNKENTSYKELFLKHRLKNVLPDYNFDYVIIDTPPNLDSLLDNALNITDKLIIPIQVERFSVESLSILMKYIDKISMYVGKDIDISIVENQFMKNRNTFMNIENSIKDKYGKYIKGKIHFSNKIKVFANDLKEPNFKEAYYQECLESLRNILGI
SIO_010081: BRE_RS05415
subclass of: SO_0000673
so part of: BRE_RS05415
location: complement(18123..18884)
location: region:18123-18884:-1
so has part: feature:18123-18884:-1:exon

WP_012539698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18123-18884:-1:exon

BRE_RS05420
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05420
old locus tag: BRE_3016
so part of: sequence
location: complement(18860..19435)
location: region:18860-19435:-1
so has part: feature:18860-19435:-1:exon
subclass of: SO_0000010

position:18860:-1
position: 18860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19435:-1
position: 19435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18860-19435:-1:exon

BRE_RS05420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05420
old locus tag: BRE_3016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MNCSLRRLKTKMIEIRLKDNKNDVFNEIEKIDKRTLYHTKIFNDFFAFGISKKEENKFFISLRNLFNKGKRSRFHLFSIKENIDDKFLGMFYGFKRLRKPIYFKYKNNNTKDIETVPMYKIYYIEFRFKRGSIFCYIRAIHSLTKKEKFNKNYAQNLLKRIINLEYEVYEFYNETPIAGGIITKWIKRNQK
SIO_010081: BRE_RS05420
subclass of: SO_0000673
so part of: BRE_RS05420
location: complement(18860..19435)
location: region:18860-19435:-1
so has part: feature:18860-19435:-1:exon

WP_012539699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18860-19435:-1:exon

BRE_RS05425
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05425
old locus tag: BRE_3017
so part of: sequence
location: complement(19508..20191)
location: region:19508-20191:-1
so has part: feature:19508-20191:-1:exon
subclass of: SO_0000010

position:19508:-1
position: 19508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20191:-1
position: 20191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19508-20191:-1:exon

BRE_RS05425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05425
old locus tag: BRE_3017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486293.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNTSHEVKIHTQPLKKYHNRYYKILSILKYFQKNLLRYNQTIILNALNRFLAKDELKIITLRTLRKDLALLCNKGIIKKTLLRLGEGNGSYIRYAVNKYSTNNLKRLLDDKQTIIEHDANEIYEFTKKTQQKYYLKNKRLNIHKHKNATKNVSHNITNNKEIKNKKNKKEKMKKIEKQTIDTNYMIKNVAKWKTMRYLDKIEENANKKRYEDSMIKTKEWLKNLKN
SIO_010081: BRE_RS05425
subclass of: SO_0000673
so part of: BRE_RS05425
location: complement(19508..20191)
location: region:19508-20191:-1
so has part: feature:19508-20191:-1:exon

WP_012539700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19508-20191:-1:exon

BRE_RS05430
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05430
so part of: sequence
location: complement(20771..21118)
location: region:20771-21118:-1
so has part: feature:20771-21118:-1:exon
subclass of: SO_0000010

position:20771:-1
position: 20771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21118:-1
position: 21118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20771-21118:-1:exon

BRE_RS05430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05430
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYIGFTSDALIASAIPSSCFTIAFRQGTKDFCSFEKINLYGSIKIETTSAIIKTIKSFLRIFTDLLTEVSLQLNPSYNQDLIYVSLFHNLILIKHLLLHDHVKVVLNKKIEIENS
SIO_010081: BRE_RS05430
subclass of: SO_0000673
so part of: BRE_RS05430
location: complement(20771..21118)
location: region:20771-21118:-1
so has part: feature:20771-21118:-1:exon

WP_041178252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20771-21118:-1:exon

BRE_RS05435
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05435
old locus tag: BRE_3018
pseudo: true
so part of: sequence
location: 21337..22373
location: region:21337-22373:1
so has part: feature:21337-22373:1:exon
subclass of: SO_0000010

position:21337:1
position: 21337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22373:1
position: 22373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21337-22373:1:exon

BRE_RS05435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05435
old locus tag: BRE_3018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687078.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05435
subclass of: SO_0000673
so part of: BRE_RS05435
location: 21337..22373
location: region:21337-22373:1
so has part: feature:21337-22373:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21337-22373:1:exon

BRE_RS06815
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06815
so part of: sequence
location: 22869..22991
location: region:22869-22991:1
so has part: feature:22869-22991:1:exon
subclass of: SO_0000010

position:22869:1
position: 22869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22991:1
position: 22991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22869-22991:1:exon

BRE_RS06815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIGKNRREKRNRESKERGDKDGENSKRNNNGDDGGSDGM
SIO_010081: BRE_RS06815
subclass of: SO_0000673
so part of: BRE_RS06815
location: 22869..22991
location: region:22869-22991:1
so has part: feature:22869-22991:1:exon

WP_269516825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22869-22991:1:exon

BRE_RS05440
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05440
old locus tag: BRE_3019
so part of: sequence
location: 22933..23577
location: region:22933-23577:1
so has part: feature:22933-23577:1:exon
subclass of: SO_0000010

position:22933:1
position: 22933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23577:1
position: 23577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22933-23577:1:exon

BRE_RS05440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05440
old locus tag: BRE_3019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539787.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MGRIVKGIIMGMMVVVMGCNSGGVSGEGTGGDGKVRKGDGSVIDLKVVGEKIKSAVEFAGKVKEVHVLVKSVDELAKAIGKKIKDSDQELDALDGKNGSLMAGVFQIILTVKGGLTKLETDSSSVTEKIKTKITDAKTKSVNFLKKLQEKNTDLGKEDVSNADAEKAIDYVKQKDGDKGAKELGELNKAVDELLVSSNKIVSDAIAELVVKPIT
SIO_010081: BRE_RS05440
subclass of: SO_0000673
so part of: BRE_RS05440
location: 22933..23577
location: region:22933-23577:1
so has part: feature:22933-23577:1:exon

WP_012539702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22933-23577:1:exon

BRE_RS05445
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05445
old locus tag: BRE_3020
so part of: sequence
location: 23823..24917
location: region:23823-24917:1
so has part: feature:23823-24917:1:exon
subclass of: SO_0000010

position:23823:1
position: 23823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24917:1
position: 24917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23823-24917:1:exon

BRE_RS05445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05445
old locus tag: BRE_3020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539703.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKEKKGKGNIEESISEYREKGREKRSKRGLKGIMVLVMVMMGCNSGGVSGGVKDPEKVFLSEMVNLGKGFLDVFVSFGDMITGTLGIKADTKKSDIGKYFTDIEKTMISVKEKLQTEVAKNGNYVKIKEVVDQFITGTLDKIAEGAKKASSGAAGGAVLGSSVKNEDAAPGEVASVNALIEGIKTIVAVVLKNEGNADANKTTDDDKKDIGKLFSKASDNGSEAEAAKANASIGAVSGVDILQAIAKSDVVSAAGKDIDQAKDVAEIATAKNDSGTKETKQKDAVISGGIALRSMAKGGKFATKNEDKAVPAINGVAASAVGKTLSALIIAIRNTVDSELKKINEVLATVKQEDKSSEATASVQ
SIO_010081: BRE_RS05445
subclass of: SO_0000673
so part of: BRE_RS05445
location: 23823..24917
location: region:23823-24917:1
so has part: feature:23823-24917:1:exon

WP_012539703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23823-24917:1:exon

BRE_RS05450
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05450
old locus tag: BRE_3021
so part of: sequence
location: 25266..25847
location: region:25266-25847:1
so has part: feature:25266-25847:1:exon
subclass of: SO_0000010

position:25266:1
position: 25266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25847:1
position: 25847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25266-25847:1:exon

BRE_RS05450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05450
old locus tag: BRE_3021
inference: COORDINATES: protein motif:HMM:NF013599.2
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MGEVSGGEEGQAKKGDGSVIDLKVVGEKIKSAVEFVEKVKEVHTLVKSVDELAKAIGKKVGAAGLGDIADHNGSLIAGAYSVIEAVDAKLATLAGKVGLSSDLSTKVNDAKVKSTAFLNKLKSSTAEFDKEGASDADSKKALLKDNADKTKGRDELDKLNTSIDILMASSKKELDDSIKNLIEEPVRPDTVGN
SIO_010081: BRE_RS05450
subclass of: SO_0000673
so part of: BRE_RS05450
location: 25266..25847
location: region:25266-25847:1
so has part: feature:25266-25847:1:exon

WP_012539704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25266-25847:1:exon

BRE_RS06700
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06700
pseudo: true
so part of: sequence
location: <26053..>26169
location: region:26053-26169:1
so has part: feature:26053-26169:1:exon
subclass of: SO_0000010

position:26053:1
position: 26053
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:26169:1
position: 26169
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26053-26169:1:exon

BRE_RS06700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539497.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06700
subclass of: SO_0000673
so part of: BRE_RS06700
location: <26053..>26169
location: region:26053-26169:1
so has part: feature:26053-26169:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26053-26169:1:exon

BRE_RS05455
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05455
old locus tag: BRE_3022
pseudo: true
so part of: sequence
location: <26284..27201
location: region:26284-27201:1
so has part: feature:26284-27201:1:exon
subclass of: SO_0000010

position:26284:1
position: 26284
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:27201:1
position: 27201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26284-27201:1:exon

BRE_RS05455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05455
old locus tag: BRE_3022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539509.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05455
subclass of: SO_0000673
so part of: BRE_RS05455
location: <26284..27201
location: region:26284-27201:1
so has part: feature:26284-27201:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26284-27201:1:exon

BRE_RS05460
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05460
old locus tag: BRE_3023
so part of: sequence
location: 27473..28471
location: region:27473-28471:1
so has part: feature:27473-28471:1:exon
subclass of: SO_0000010

position:27473:1
position: 27473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28471:1
position: 28471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27473-28471:1:exon

BRE_RS05460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05460
old locus tag: BRE_3023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696701.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MMMVMMGCNSGGVSGGVRDPEKVFLSEMVNLGKGFLDVFVSFGDMITGTLGIKADTKKSEIGGYFTKIAETMKGVREKLGKILEENGKYEKVKEKVEEFIGEIGKIEAGAQEAAKGATGEAIGNAASAGHGATPANRESVVSLVKGIKIIVDVVLKGKGNAEATKTGDDKKDIGNLFADDNGKGDAKEENIAKASASIGAVIGADILQAIAKSKEDPKDYATDGIEKATDAAEIAIAKAVNAKKEIKEESAKKDAVIAAGIALRGMAKDGKFAANQSAKDANAVNGAVASAVNKVLSTLTIAIRNTVDLGLKEINKVLGEIKEGEGFEVKTN
SIO_010081: BRE_RS05460
subclass of: SO_0000673
so part of: BRE_RS05460
location: 27473..28471
location: region:27473-28471:1
so has part: feature:27473-28471:1:exon

WP_049752038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27473-28471:1:exon

BRE_RS05465
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05465
old locus tag: BRE_3024
pseudo: true
so part of: sequence
location: 28726..29330
location: region:28726-29330:1
so has part: feature:28726-29330:1:exon
subclass of: SO_0000010

position:28726:1
position: 28726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29330:1
position: 29330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28726-29330:1:exon

BRE_RS05465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05465
old locus tag: BRE_3024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539714.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
SIO_010081: BRE_RS05465
subclass of: SO_0000673
so part of: BRE_RS05465
location: 28726..29330
location: region:28726-29330:1
so has part: feature:28726-29330:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28726-29330:1:exon

BRE_RS05470
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05470
old locus tag: BRE_3025
pseudo: true
so part of: sequence
location: <29905..30656
location: region:29905-30656:1
so has part: feature:29905-30656:1:exon
subclass of: SO_0000010

position:29905:1
position: 29905
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:30656:1
position: 30656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29905-30656:1:exon

BRE_RS05470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05470
old locus tag: BRE_3025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539493.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05470
subclass of: SO_0000673
so part of: BRE_RS05470
location: <29905..30656
location: region:29905-30656:1
so has part: feature:29905-30656:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29905-30656:1:exon

BRE_RS05475
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05475
old locus tag: BRE_3026
pseudo: true
so part of: sequence
location: <30841..31686
location: region:30841-31686:1
so has part: feature:30841-31686:1:exon
subclass of: SO_0000010

position:30841:1
position: 30841
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:31686:1
position: 31686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30841-31686:1:exon

BRE_RS05475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05475
old locus tag: BRE_3026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683299.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05475
subclass of: SO_0000673
so part of: BRE_RS05475
location: <30841..31686
location: region:30841-31686:1
so has part: feature:30841-31686:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30841-31686:1:exon

BRE_RS05480
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05480
old locus tag: BRE_3027
pseudo: true
so part of: sequence
location: 31869..32875
location: region:31869-32875:1
so has part: feature:31869-32875:1:exon
subclass of: SO_0000010

position:31869:1
position: 31869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32875:1
position: 32875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31869-32875:1:exon

BRE_RS05480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05480
old locus tag: BRE_3027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539515.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05480
subclass of: SO_0000673
so part of: BRE_RS05480
location: 31869..32875
location: region:31869-32875:1
so has part: feature:31869-32875:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31869-32875:1:exon

BRE_RS06105
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06105
pseudo: true
so part of: sequence
location: <33102..33380
location: region:33102-33380:1
so has part: feature:33102-33380:1:exon
subclass of: SO_0000010

position:33102:1
position: 33102
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:33380:1
position: 33380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33102-33380:1:exon

BRE_RS06105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687021.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06105
subclass of: SO_0000673
so part of: BRE_RS06105
location: <33102..33380
location: region:33102-33380:1
so has part: feature:33102-33380:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33102-33380:1:exon

BRE_RS05490
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05490
old locus tag: BRE_3029
pseudo: true
so part of: sequence
location: 33589..34547
location: region:33589-34547:1
so has part: feature:33589-34547:1:exon
subclass of: SO_0000010

position:33589:1
position: 33589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34547:1
position: 34547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33589-34547:1:exon

BRE_RS05490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05490
old locus tag: BRE_3029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539585.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05490
subclass of: SO_0000673
so part of: BRE_RS05490
location: 33589..34547
location: region:33589-34547:1
so has part: feature:33589-34547:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33589-34547:1:exon

BRE_RS05495
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05495
old locus tag: BRE_3030
pseudo: true
so part of: sequence
location: 34698..35791
location: region:34698-35791:1
so has part: feature:34698-35791:1:exon
subclass of: SO_0000010

position:34698:1
position: 34698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35791:1
position: 35791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34698-35791:1:exon

BRE_RS05495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05495
old locus tag: BRE_3030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683354.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05495
subclass of: SO_0000673
so part of: BRE_RS05495
location: 34698..35791
location: region:34698-35791:1
so has part: feature:34698-35791:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34698-35791:1:exon