Borrelia recurrentis A1 plasmid pl33, complete sequence.
type: Entry
definition: Borrelia recurrentis A1 plasmid pl33, complete sequence.
sequence version: NC_011253.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_011253.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603586
keyword: RefSeq
source: Borrelia recurrentis A1
organism: Borrelia recurrentis A1
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000996.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 33213
topology: linear
so has quality: SO_0000987
location: 1..33213
location: region:1-33213:1
RO_0002162: 412418

NC_011253
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603586
type: BioSample
SIO_000068: biosample

1
title: The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
author: Lescot, M.
author: Audic, S.
author: Robert, C.
author: Nguyen, T.
author: Blanc, g.
author: Cutler, S.J.
author: Wincker, P.
author: Couloux, A.
author: Claverie, J.-M.
author: Raoult, D.
author: Drancourt, M.
journal: PLoS 4 (9), e1000185 (2008)
comments: Publication Status: Online-Only

2
title: Direct Submission
author: Audic, S.
journal: Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33213:1
position: 33213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-33213:1:source
so part of: sequence
organism: Borrelia recurrentis A1
mol type: genomic DNA
strain: A1
plasmid: pl33

412418
type: Taxonomy
SIO_000068: taxonomy

BRE_RS06580
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06580
so part of: sequence
location: 110..286
location: region:110-286:1
so has part: feature:110-286:1:exon
subclass of: SO_0000010

position:110:1
position: 110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:286:1
position: 286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110-286:1:exon

BRE_RS06580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQQRQIFNSESKKQHKKFNDYKILKFIKSNLENDNRTIKSVRKINQNTNLSKYKINK
SIO_010081: BRE_RS06580
subclass of: SO_0000673
so part of: BRE_RS06580
location: 110..286
location: region:110-286:1
so has part: feature:110-286:1:exon

WP_232212758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:110-286:1:exon

BRE_RS04995
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04995
old locus tag: BRE_5001
so part of: sequence
location: complement(375..878)
location: region:375-878:-1
so has part: feature:375-878:-1:exon
subclass of: SO_0000010

position:375:-1
position: 375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:878:-1
position: 878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375-878:-1:exon

BRE_RS04995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04995
old locus tag: BRE_5001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539625.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BdrQ protein
translation: MDVAVTKEQLIDDNPINKSSIRSERVKKDYHNIPFDGHIISYYVLEEKFDLLQDRMMDNFHYLDDKINILKIDLNEKIDGVESRLSARMDKLDAKIEAVKSDVGQINSRLTFIESKLGFIEGKLGFIEGKLGFKGQLISSLTVIATLAVSYFVVQMFVTLGKYLGIS
SIO_010081: BRE_RS04995
subclass of: SO_0000673
so part of: BRE_RS04995
location: complement(375..878)
location: region:375-878:-1
so has part: feature:375-878:-1:exon

WP_156768700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:375-878:-1:exon

BRE_RS05000
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05000
old locus tag: BRE_5002
so part of: sequence
location: complement(1164..1406)
location: region:1164-1406:-1
so has part: feature:1164-1406:-1:exon
subclass of: SO_0000010

position:1164:-1
position: 1164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1406:-1
position: 1406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1164-1406:-1:exon

BRE_RS05000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05000
old locus tag: BRE_5002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539799.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTKPTFMPGEGLMTNEFGQNELVRVTPAPINENFSNLEARIIAEEINRIQKIEGSNKGHVIINNYLMVMFWMLINLLEC
SIO_010081: BRE_RS05000
subclass of: SO_0000673
so part of: BRE_RS05000
location: complement(1164..1406)
location: region:1164-1406:-1
so has part: feature:1164-1406:-1:exon

WP_012539576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1164-1406:-1:exon

BRE_RS06230
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06230
so part of: sequence
location: complement(1427..1591)
location: region:1427-1591:-1
so has part: feature:1427-1591:-1:exon
subclass of: SO_0000010

position:1427:-1
position: 1427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1591:-1
position: 1591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1427-1591:-1:exon

BRE_RS06230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06230
inference: COORDINATES: protein motif:HMM:NF014983.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF228 domain-containing protein
translation: MYASFKYKYQNSSNSGGFVTSNCNKVENHPIKGSLYKRVVKLAFDDNGRYDLSV
SIO_010081: BRE_RS06230
subclass of: SO_0000673
so part of: BRE_RS06230
location: complement(1427..1591)
location: region:1427-1591:-1
so has part: feature:1427-1591:-1:exon

WP_156768701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1427-1591:-1:exon

BRE_RS05005
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05005
old locus tag: BRE_5003
so part of: sequence
location: complement(1694..1969)
location: region:1694-1969:-1
so has part: feature:1694-1969:-1:exon
subclass of: SO_0000010

position:1694:-1
position: 1694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1969:-1
position: 1969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1694-1969:-1:exon

BRE_RS05005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05005
old locus tag: BRE_5003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539341.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDIKFPKKKKGFRDEEIDMEAFIEQVDANIEKMDREFKEFQRRYGSDKSFEDWIEYEEKEQKLKDEKIQLRVKNLSSRFAKKLNSKIIAK
SIO_010081: BRE_RS05005
subclass of: SO_0000673
so part of: BRE_RS05005
location: complement(1694..1969)
location: region:1694-1969:-1
so has part: feature:1694-1969:-1:exon

WP_041177975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1694-1969:-1:exon

BRE_RS06585
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06585
old locus tag: BRE_5004
pseudo: true
so part of: sequence
location: complement(2336..3088)
location: region:2336-3088:-1
so has part: feature:2336-3088:-1:exon
subclass of: SO_0000010

position:2336:-1
position: 2336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3088:-1
position: 3088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2336-3088:-1:exon

BRE_RS06585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06585
old locus tag: BRE_5004
inference: COORDINATES: protein motif:HMM:NF017525.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: virulence associated lipoprotein
SIO_010081: BRE_RS06585
subclass of: SO_0000673
so part of: BRE_RS06585
location: complement(2336..3088)
location: region:2336-3088:-1
so has part: feature:2336-3088:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2336-3088:-1:exon

BRE_RS06235
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06235
so part of: sequence
location: complement(3664..3813)
location: region:3664-3813:-1
so has part: feature:3664-3813:-1:exon
subclass of: SO_0000010

position:3664:-1
position: 3664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3813:-1
position: 3813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3664-3813:-1:exon

BRE_RS06235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLQKGNIGIADDVAGVSAVGADKVSVEIVIESVKKVVDIAKQSGVEVNF
SIO_010081: BRE_RS06235
subclass of: SO_0000673
so part of: BRE_RS06235
location: complement(3664..3813)
location: region:3664-3813:-1
so has part: feature:3664-3813:-1:exon

WP_156768702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3664-3813:-1:exon

BRE_RS05855
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05855
old locus tag: BRE_5005
so part of: sequence
location: complement(3782..4090)
location: region:3782-4090:-1
so has part: feature:3782-4090:-1:exon
subclass of: SO_0000010

position:3782:-1
position: 3782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4090:-1
position: 4090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3782-4090:-1:exon

BRE_RS05855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05855
old locus tag: BRE_5005
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MVLGIFSVFGSEIGDTLGFSVVKSGYKRDKIVEYFEKIKKGLEVINEKLQGLAGEISGAKNADVNTIGVVKGSIKEANEVFDQLIVALTKLVGVAKGQYWYC
SIO_010081: BRE_RS05855
subclass of: SO_0000673
so part of: BRE_RS05855
location: complement(3782..4090)
location: region:3782-4090:-1
so has part: feature:3782-4090:-1:exon

WP_049752023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3782-4090:-1:exon

BRE_RS06795
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06795
so part of: sequence
location: complement(4092..4220)
location: region:4092-4220:-1
so has part: feature:4092-4220:-1:exon
subclass of: SO_0000010

position:4092:-1
position: 4092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4220:-1
position: 4220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4092-4220:-1:exon

BRE_RS06795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06795
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKENECKAVSTKTDGEQYKTIGKLFEKRDNVSEAKAAVAQVQ
SIO_010081: BRE_RS06795
subclass of: SO_0000673
so part of: BRE_RS06795
location: complement(4092..4220)
location: region:4092-4220:-1
so has part: feature:4092-4220:-1:exon

WP_269516815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4092-4220:-1:exon

BRE_RS06590
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06590
pseudo: true
so part of: sequence
location: complement(<4379..>4622)
location: region:4379-4622:-1
so has part: feature:4379-4622:-1:exon
subclass of: SO_0000010

position:4379:-1
position: 4379
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4622:-1
position: 4622
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4379-4622:-1:exon

BRE_RS06590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539716.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06590
subclass of: SO_0000673
so part of: BRE_RS06590
location: complement(<4379..>4622)
location: region:4379-4622:-1
so has part: feature:4379-4622:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4379-4622:-1:exon

BRE_RS05025
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05025
old locus tag: BRE_5006
pseudo: true
so part of: sequence
location: complement(4964..5984)
location: region:4964-5984:-1
so has part: feature:4964-5984:-1:exon
subclass of: SO_0000010

position:4964:-1
position: 4964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5984:-1
position: 5984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4964-5984:-1:exon

BRE_RS05025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05025
old locus tag: BRE_5006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539526.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05025
subclass of: SO_0000673
so part of: BRE_RS05025
location: complement(4964..5984)
location: region:4964-5984:-1
so has part: feature:4964-5984:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4964-5984:-1:exon

BRE_RS06595
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06595
so part of: sequence
location: complement(6257..6829)
location: region:6257-6829:-1
so has part: feature:6257-6829:-1:exon
subclass of: SO_0000010

position:6257:-1
position: 6257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6829:-1
position: 6829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6257-6829:-1:exon

BRE_RS06595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06595
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MFLIEESVKAIIEGIKEIVELAENSGVNVSTGDAGDAVAASSQTAAPAALNGGHAGSQQGAGVKLAEEVSKADPWVMIDKIRKSNVSTESGYMSGNKKAGELITGKTSSGIGVGAETNADFAAAVALKAMSKDGKFAVYAKNFSSNDANKIKEAATEAVNKVLDTLGLIIRRTVRMEIGKVNKKVIDQKS
SIO_010081: BRE_RS06595
subclass of: SO_0000673
so part of: BRE_RS06595
location: complement(6257..6829)
location: region:6257-6829:-1
so has part: feature:6257-6829:-1:exon

WP_232212759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6257-6829:-1:exon

BRE_RS06600
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06600
so part of: sequence
location: complement(6804..7064)
location: region:6804-7064:-1
so has part: feature:6804-7064:-1:exon
subclass of: SO_0000010

position:6804:-1
position: 6804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7064:-1
position: 7064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6804-7064:-1:exon

BRE_RS06600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLEDLLVTADIKSTDKRSKIKEHFDKVKSQLETVKKSKLGDSSEVLDKLIAAVKKLSEAVGDDKTDIGAVSNSATWSSIVSNRREC
SIO_010081: BRE_RS06600
subclass of: SO_0000673
so part of: BRE_RS06600
location: complement(6804..7064)
location: region:6804-7064:-1
so has part: feature:6804-7064:-1:exon

WP_232212760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6804-7064:-1:exon

BRE_RS06605
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06605
so part of: sequence
location: complement(7110..7526)
location: region:7110-7526:-1
so has part: feature:7110-7526:-1:exon
subclass of: SO_0000010

position:7110:-1
position: 7110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7526:-1
position: 7526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7110-7526:-1:exon

BRE_RS06605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKPLGLLIIINLFMGCNSDSMLSLSKFIDKHKDTGSNIFGLDKLSDESKDALLDSALTLGQEVLQVEKEIGPKVVNMGEEVVSGTLELGQEILQMGQNLGEVIVPGAIQAGQVILPGVLHAGQIVVPGLLETGKVIG
SIO_010081: BRE_RS06605
subclass of: SO_0000673
so part of: BRE_RS06605
location: complement(7110..7526)
location: region:7110-7526:-1
so has part: feature:7110-7526:-1:exon

WP_232212761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7110-7526:-1:exon

BRE_RS05035
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05035
old locus tag: BRE_5008
pseudo: true
so part of: sequence
location: complement(7749..8252)
location: region:7749-8252:-1
so has part: feature:7749-8252:-1:exon
subclass of: SO_0000010

position:7749:-1
position: 7749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8252:-1
position: 8252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7749-8252:-1:exon

BRE_RS05035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05035
old locus tag: BRE_5008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683279.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Bdr family repetitive protein
SIO_010081: BRE_RS05035
subclass of: SO_0000673
so part of: BRE_RS05035
location: complement(7749..8252)
location: region:7749-8252:-1
so has part: feature:7749-8252:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7749-8252:-1:exon

BRE_RS05040
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05040
old locus tag: BRE_5009
so part of: sequence
location: 8554..9198
location: region:8554-9198:1
so has part: feature:8554-9198:1:exon
subclass of: SO_0000010

position:8554:1
position: 8554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9198:1
position: 9198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8554-9198:1:exon

BRE_RS05040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05040
old locus tag: BRE_5009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539796.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MHTSQKIQNYTQLSKKYQIRYYKIVSIIRYFQKNTIKYNQTIILNTLNRFLTKDELKIITLRTLRKDLALLCNKGIIQKTLLRLGEGNGSYIRYTVNKYSQNNLKRFIENKQDIIEHDANAIYKFTKETQKKYFKNIGYKTYKSKNVTKNVSHNIINNKDINIKDTKDINLLISNTSKWKTMRYLDKIEENKNKKRYEEAIIKTKKWLESERNK
SIO_010081: BRE_RS05040
subclass of: SO_0000673
so part of: BRE_RS05040
location: 8554..9198
location: region:8554-9198:1
so has part: feature:8554-9198:1:exon

WP_041178235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8554-9198:1:exon

BRE_RS05045
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05045
old locus tag: BRE_5010
so part of: sequence
location: 9182..9784
location: region:9182-9784:1
so has part: feature:9182-9784:1:exon
subclass of: SO_0000010

position:9182:1
position: 9182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9784:1
position: 9784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9182-9784:1:exon

BRE_RS05045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05045
old locus tag: BRE_5010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539795.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKETNKLLTEFERKNVICQLKNLESKPKKNFNDSFSKIEKEDARTIYHTKIFNDLFAFGVNRREEDKFFVALRGVFNSDKKSTFRLFSIEKEEDRFLGMFYGFKRLKTSFILRYKDDTKKSDVTTKIYKPYYIEFRFKKGSIFCYIKAIHSLIKKEKFTKKYVQTLLERIMKLEDEVYKFYNKRLPDGGIVTKWIEKNQR
SIO_010081: BRE_RS05045
subclass of: SO_0000673
so part of: BRE_RS05045
location: 9182..9784
location: region:9182-9784:1
so has part: feature:9182-9784:1:exon

WP_012539579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9182-9784:1:exon

BRE_RS05050
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05050
old locus tag: BRE_5011
so part of: sequence
location: 9760..10512
location: region:9760-10512:1
so has part: feature:9760-10512:1:exon
subclass of: SO_0000010

position:9760:1
position: 9760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10512:1
position: 10512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9760-10512:1:exon

BRE_RS05050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05050
old locus tag: BRE_5011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539580.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKKPEVITIASIKGGVGKSTSAIIFATLLSKKYKVLLVDIDTQASTTSYYHEKLIENDIDVVNINIYRVLNETLDINDSIVNIDNNLDFIPSYIHLHKFIREAIPLKELRLKECLFFLQNEYDYVVLDTNPSLDATLANALICSGYIIVPMTAEKWAVESLELIEFYMKELRINLPIFILITRFKNNNTHKELLEYIQSKRGFLGFIHEREDLNKRISKNDVFDLNKDYIKDYGSALESFLTKKLIVR
SIO_010081: BRE_RS05050
subclass of: SO_0000673
so part of: BRE_RS05050
location: 9760..10512
location: region:9760-10512:1
so has part: feature:9760-10512:1:exon

WP_012539580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9760-10512:1:exon

BRE_RS05055
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05055
old locus tag: BRE_5012
so part of: sequence
location: 10535..11134
location: region:10535-11134:1
so has part: feature:10535-11134:1:exon
subclass of: SO_0000010

position:10535:1
position: 10535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11134:1
position: 11134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10535-11134:1:exon

BRE_RS05055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05055
old locus tag: BRE_5012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539794.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKNVVLSNRVLHDNKDVKLINLKQESLIRYNELKEKLKQNARKEIYYKVENIRILKEIKDNEYYKLDGHKHFDSFIKDYRMAKTQVYAYLRLANAMEKGILAEQYIIENGINESLAIIKNKKTIKIKKIRRGSINSLSFKLKNQASYDFYKNNVKFIAFMLDTIFLNDRNYLQKLFQKYSNLHLDKKVVNIADLLEKFQ
SIO_010081: BRE_RS05055
subclass of: SO_0000673
so part of: BRE_RS05055
location: 10535..11134
location: region:10535-11134:1
so has part: feature:10535-11134:1:exon

WP_012539581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10535-11134:1:exon

BRE_RS05060
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05060
old locus tag: BRE_5013
pseudo: true
so part of: sequence
location: <11422..12366
location: region:11422-12366:1
so has part: feature:11422-12366:1:exon
subclass of: SO_0000010

position:11422:1
position: 11422
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12366:1
position: 12366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11422-12366:1:exon

BRE_RS05060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05060
old locus tag: BRE_5013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539593.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05060
subclass of: SO_0000673
so part of: BRE_RS05060
location: <11422..12366
location: region:11422-12366:1
so has part: feature:11422-12366:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11422-12366:1:exon

BRE_RS05065
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05065
old locus tag: BRE_5014
so part of: sequence
location: 13336..14223
location: region:13336-14223:1
so has part: feature:13336-14223:1:exon
subclass of: SO_0000010

position:13336:1
position: 13336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14223:1
position: 14223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13336-14223:1:exon

BRE_RS05065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05065
old locus tag: BRE_5014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539582.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKKFSLFNIMIVFGLIIGCSTDVQPSSVLKDQKYFGDQTLVSSDQGYLYSDLSRVDETEKLYQDIVSRGRKYFKKFKVKRENFALKKAQFDESIIIKVKKRYPLVVKCEDCIYAGLNYSEEAISDLVSILNKLLSGPIGEIMPYRNDRVACVFYLLKILQDIERFTREVVCSDDSYVSDSNLLNVHRLFISLDIINKDNMLKSKLATIKFALNIFIKKRNKFIRLIIENIKEINKQENVDEIVKLININMRSWDNNGKIFKKMYSFNTSSKSLYSLHDFIKNQTIDLNNQFIIK
SIO_010081: BRE_RS05065
subclass of: SO_0000673
so part of: BRE_RS05065
location: 13336..14223
location: region:13336-14223:1
so has part: feature:13336-14223:1:exon

WP_012539582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13336-14223:1:exon

BRE_RS05070
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05070
old locus tag: BRE_5015
so part of: sequence
location: complement(14439..14969)
location: region:14439-14969:-1
so has part: feature:14439-14969:-1:exon
subclass of: SO_0000010

position:14439:-1
position: 14439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14969:-1
position: 14969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14439-14969:-1:exon

BRE_RS05070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05070
old locus tag: BRE_5015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539791.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKFLGVSFILLFLGCDGKEFTASKRNKVFSGDNVQNHNKVNDLSIELSLNVDEKKTLNFFIETLKDEYAKTTSSTNMHFKRTVNDINKIEEYLEQFFLELKDNAKAKELLRIVKDTKENPGVGGLETVKSSIAGAFDNFFGATPEPISHKSKSISTFESIKTACDAYKAKTAKQA
SIO_010081: BRE_RS05070
subclass of: SO_0000673
so part of: BRE_RS05070
location: complement(14439..14969)
location: region:14439-14969:-1
so has part: feature:14439-14969:-1:exon

WP_012539583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14439-14969:-1:exon

BRE_RS06375
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06375
so part of: sequence
location: 15241..15393
location: region:15241-15393:1
so has part: feature:15241-15393:1:exon
subclass of: SO_0000010

position:15241:1
position: 15241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15393:1
position: 15393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15241-15393:1:exon

BRE_RS06375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539790.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGMGKERIVYIRSIITGEDIWNDTGDKTYSNDEFYNLLVDLDVDKVLIR
SIO_010081: BRE_RS06375
subclass of: SO_0000673
so part of: BRE_RS06375
location: 15241..15393
location: region:15241-15393:1
so has part: feature:15241-15393:1:exon

WP_158298616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15241-15393:1:exon

BRE_RS05075
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05075
old locus tag: BRE_5016
so part of: sequence
location: 15782..16375
location: region:15782-16375:1
so has part: feature:15782-16375:1:exon
subclass of: SO_0000010

position:15782:1
position: 15782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16375:1
position: 16375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15782-16375:1:exon

BRE_RS05075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05075
old locus tag: BRE_5016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDFMCNRVVLVFCIVCFISCGFLETKNKTRLLQNLENIDLKSDWKDNLKLSNDELGILTFFVNALKDELSKAHISADHFNIHLKGDLSKVEGYVKRFFLKLNDKDKVRELLGYIKYGIDNPPNVEGRDVYVGMDAKEHYRLERRLASVFDNYFMLLNPPSSEPFADSSAKVPFIGGDPEDKMFNDIKSVCYEYRGSH
SIO_010081: BRE_RS05075
subclass of: SO_0000673
so part of: BRE_RS05075
location: 15782..16375
location: region:15782-16375:1
so has part: feature:15782-16375:1:exon

WP_012539584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15782-16375:1:exon

BRE_RS06245
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06245
old locus tag: BRE_5017
pseudo: true
so part of: sequence
location: 16734..>17004
location: region:16734-17004:1
so has part: feature:16734-17004:1:exon
subclass of: SO_0000010

position:16734:1
position: 16734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17004:1
position: 17004
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16734-17004:1:exon

BRE_RS06245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06245
old locus tag: BRE_5017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687021.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06245
subclass of: SO_0000673
so part of: BRE_RS06245
location: 16734..>17004
location: region:16734-17004:1
so has part: feature:16734-17004:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16734-17004:1:exon

BRE_RS05080
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05080
old locus tag: BRE_5018
so part of: sequence
location: 17194..18240
location: region:17194-18240:1
so has part: feature:17194-18240:1:exon
subclass of: SO_0000010

position:17194:1
position: 17194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18240:1
position: 18240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17194-18240:1:exon

BRE_RS05080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05080
old locus tag: BRE_5018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539585.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKREKKGEGKVRVVILMVMMIVMGCNSGGVKDPEKVFLSEMVNLGKGFLDVFVSFGDMITETLGIKVETKKSEIGAYFSKIENTMKVVKGKLSKILEEHGSYEKVKEKVEGFIGKISKSEEGAKEAASGASGEEAIGNATTAGHGATPASKDAVVSLVKGIKAIVGVVLKDNEGSADANKTGDDKKDIGNLFVNDAGKGEAKEENIAKAAASIGVVSGADILKAIAKSKENPNIDTTNGIEKATDAAEIAVAKAVNDKKEIKEVTAKKDAVIAGGIALRGMAKDGKFAVKNEDKSANAVNGAVASAVNKVLSTLTIAIRNTVDLGLKEINKVLGEIKQGEGAVAKVNE
SIO_010081: BRE_RS05080
subclass of: SO_0000673
so part of: BRE_RS05080
location: 17194..18240
location: region:17194-18240:1
so has part: feature:17194-18240:1:exon

WP_012539585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17194-18240:1:exon

BRE_RS05085
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05085
old locus tag: BRE_5019
pseudo: true
so part of: sequence
location: 18512..19585
location: region:18512-19585:1
so has part: feature:18512-19585:1:exon
subclass of: SO_0000010

position:18512:1
position: 18512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19585:1
position: 19585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18512-19585:1:exon

BRE_RS05085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05085
old locus tag: BRE_5019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539509.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05085
subclass of: SO_0000673
so part of: BRE_RS05085
location: 18512..19585
location: region:18512-19585:1
so has part: feature:18512-19585:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18512-19585:1:exon

BRE_RS05090
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05090
old locus tag: BRE_5020
so part of: sequence
location: complement(20211..20918)
location: region:20211-20918:-1
so has part: feature:20211-20918:-1:exon
subclass of: SO_0000010

position:20211:-1
position: 20211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20918:-1
position: 20918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20211-20918:-1:exon

BRE_RS05090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05090
old locus tag: BRE_5020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539602.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKNKSILILYITLFLYGCDTDKFDNKLQTQSATRFTTEQKLTTQRPNVIMQKSTIHASQKPMLSSEEKDKFKLLKYALDMDLKAYQQNYTNPKAEEVANIYKNIINWISNNLNIEEQKDLINSFSHVYTFIKNKLNNNPNMDIIQYVEDAYYNFQDDEYKKEHTYDSKLYGKPHGANHNSITMFFYLIKVNAIERQPNLQDNEEFYKNAIQKIKNELQDKTSDSYKYSLALWKD
SIO_010081: BRE_RS05090
subclass of: SO_0000673
so part of: BRE_RS05090
location: complement(20211..20918)
location: region:20211-20918:-1
so has part: feature:20211-20918:-1:exon

WP_012539586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20211-20918:-1:exon

BRE_RS05095
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05095
old locus tag: BRE_5021
so part of: sequence
location: 21111..21287
location: region:21111-21287:1
so has part: feature:21111-21287:1:exon
subclass of: SO_0000010

position:21111:1
position: 21111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21287:1
position: 21287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21111-21287:1:exon

BRE_RS05095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05095
old locus tag: BRE_5021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696744.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRLVKILDFREINNEDGEGLNNKICELDEVKSSKEIKKIELYYQAMLKLKSNRCCLI
SIO_010081: BRE_RS05095
subclass of: SO_0000673
so part of: BRE_RS05095
location: 21111..21287
location: region:21111-21287:1
so has part: feature:21111-21287:1:exon

WP_232212762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21111-21287:1:exon

BRE_RS06610
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06610
so part of: sequence
location: 21500..21667
location: region:21500-21667:1
so has part: feature:21500-21667:1:exon
subclass of: SO_0000010

position:21500:1
position: 21500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21667:1
position: 21667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21500-21667:1:exon

BRE_RS06610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKIPFVPKYSNTSYFEIDSLRVNLYGGDKIRDFERFRGSNSAVIYVNEATTLHK
SIO_010081: BRE_RS06610
subclass of: SO_0000673
so part of: BRE_RS06610
location: 21500..21667
location: region:21500-21667:1
so has part: feature:21500-21667:1:exon

WP_232212763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21500-21667:1:exon

BRE_RS06615
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06615
pseudo: true
so part of: sequence
location: 22040..22485
location: region:22040-22485:1
so has part: feature:22040-22485:1:exon
subclass of: SO_0000010

position:22040:1
position: 22040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22485:1
position: 22485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22040-22485:1:exon

BRE_RS06615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06615
inference: COORDINATES: protein motif:HMM:NF036421.2
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: BRE_RS06615
subclass of: SO_0000673
so part of: BRE_RS06615
location: 22040..22485
location: region:22040-22485:1
so has part: feature:22040-22485:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22040-22485:1:exon

BRE_RS05105
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05105
old locus tag: BRE_5023
so part of: sequence
location: 22527..23315
location: region:22527-23315:1
so has part: feature:22527-23315:1:exon
subclass of: SO_0000010

position:22527:1
position: 22527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23315:1
position: 23315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22527-23315:1:exon

BRE_RS05105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05105
old locus tag: BRE_5023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539611.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MEYMQMEPVITRQMVLNELVKAGINREIADDLSYRYYKNELTTKDLQYLESNFNLKLEILERGLKADIKELDNKIDAGFTELDIKIDTVENNLNNKIDRVRDELKLDIKELDIKIDTVENNLNNKIDRVRNELKLDIKELDIKIDTVENNLNNKIDKVRDELKLDIKELDTRIDTVENNLNNKIDKVRDELKLDIKELDTKIDIVRKDMEVNKMELDTKIDKFASDVKGTFKLHAWMFGTIITINVGIFLALISMLYALFIK
SIO_010081: BRE_RS05105
subclass of: SO_0000673
so part of: BRE_RS05105
location: 22527..23315
location: region:22527-23315:1
so has part: feature:22527-23315:1:exon

WP_041178237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22527-23315:1:exon

BRE_RS05110
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05110
old locus tag: BRE_5024
pseudo: true
so part of: sequence
location: 23915..24975
location: region:23915-24975:1
so has part: feature:23915-24975:1:exon
subclass of: SO_0000010

position:23915:1
position: 23915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24975:1
position: 24975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23915-24975:1:exon

BRE_RS05110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05110
old locus tag: BRE_5024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539593.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05110
subclass of: SO_0000673
so part of: BRE_RS05110
location: 23915..24975
location: region:23915-24975:1
so has part: feature:23915-24975:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23915-24975:1:exon

BRE_RS06380
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06380
pseudo: true
so part of: sequence
location: 25271..>25657
location: region:25271-25657:1
so has part: feature:25271-25657:1:exon
subclass of: SO_0000010

position:25271:1
position: 25271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25657:1
position: 25657
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25271-25657:1:exon

BRE_RS06380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539497.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06380
subclass of: SO_0000673
so part of: BRE_RS06380
location: 25271..>25657
location: region:25271-25657:1
so has part: feature:25271-25657:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25271-25657:1:exon

BRE_RS05115
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05115
old locus tag: BRE_5025
so part of: sequence
location: 25793..26233
location: region:25793-26233:1
so has part: feature:25793-26233:1:exon
subclass of: SO_0000010

position:25793:1
position: 25793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26233:1
position: 26233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25793-26233:1:exon

BRE_RS05115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
gene: bdr
locus tag: BRE_RS05115
old locus tag: BRE_5025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539550.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MEYMQMEPVITRQMVLNELVKVGINRDIADDLSYRYYKNELTTKDLQYLESNFKFKLEILERGLKADIKELDNKIDIVENNLNNKIDKVRDELKSDISLVRKDMEVNKMELNSKLKLHAWMFGTIITINVGIFLALMSMLYALFIK
SIO_010081: BRE_RS05115
subclass of: SO_0000673
so part of: BRE_RS05115
location: 25793..26233
location: region:25793-26233:1
so has part: feature:25793-26233:1:exon

WP_041178238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25793-26233:1:exon

BRE_RS05120
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05120
old locus tag: BRE_5026
pseudo: true
so part of: sequence
location: 26575..27531
location: region:26575-27531:1
so has part: feature:26575-27531:1:exon
subclass of: SO_0000010

position:26575:1
position: 26575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27531:1
position: 27531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26575-27531:1:exon

BRE_RS05120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05120
old locus tag: BRE_5026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015633355.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05120
subclass of: SO_0000673
so part of: BRE_RS05120
location: 26575..27531
location: region:26575-27531:1
so has part: feature:26575-27531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26575-27531:1:exon

BRE_RS05125
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05125
old locus tag: BRE_5027
so part of: sequence
location: 27849..28460
location: region:27849-28460:1
so has part: feature:27849-28460:1:exon
subclass of: SO_0000010

position:27849:1
position: 27849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28460:1
position: 28460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27849-28460:1:exon

BRE_RS05125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05125
old locus tag: BRE_5027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539528.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
translation: MVVVMVMGCNSGGVSGGEEGQAKKGDGSVIDLKVVGEKIKSAVEFVEKVKEVHTLVKSVDELAKAIGKKVGAAGLGDIADHNGSLIAGAYSVIEAVDAKLATLAGKVGLSSDLSTKVNDAKVKSTAFLNKLKSSTAEFDKEGASDADSKKALLKDNADKTKGRDELDKLNTSIDILMASSKKELDDSIKNLIEEPVRPDTVGN
SIO_010081: BRE_RS05125
subclass of: SO_0000673
so part of: BRE_RS05125
location: 27849..28460
location: region:27849-28460:1
so has part: feature:27849-28460:1:exon

WP_012539589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27849-28460:1:exon

BRE_RS06620
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06620
pseudo: true
so part of: sequence
location: <28666..>28782
location: region:28666-28782:1
so has part: feature:28666-28782:1:exon
subclass of: SO_0000010

position:28666:1
position: 28666
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:28782:1
position: 28782
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28666-28782:1:exon

BRE_RS06620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539497.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06620
subclass of: SO_0000673
so part of: BRE_RS06620
location: <28666..>28782
location: region:28666-28782:1
so has part: feature:28666-28782:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28666-28782:1:exon

BRE_RS05130
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05130
old locus tag: BRE_5028
pseudo: true
so part of: sequence
location: <28897..29814
location: region:28897-29814:1
so has part: feature:28897-29814:1:exon
subclass of: SO_0000010

position:28897:1
position: 28897
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:29814:1
position: 29814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28897-29814:1:exon

BRE_RS05130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05130
old locus tag: BRE_5028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539509.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05130
subclass of: SO_0000673
so part of: BRE_RS05130
location: <28897..29814
location: region:28897-29814:1
so has part: feature:28897-29814:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28897-29814:1:exon

BRE_RS05135
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05135
old locus tag: BRE_5029
so part of: sequence
location: 30086..31084
location: region:30086-31084:1
so has part: feature:30086-31084:1:exon
subclass of: SO_0000010

position:30086:1
position: 30086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31084:1
position: 31084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30086-31084:1:exon

BRE_RS05135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05135
old locus tag: BRE_5029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014696701.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MMMVMMGCNSGGVSGGVRDPEKVFLSEMVNLGKGFLDVFVSFGDMITGTLGIKADTKKSEIGGYFTKIAETMKGVREKLGKILEENGKYEKVKEKVEEFVGEIGKIEAGAQEAAKGATGEAIGNAASAGHGATPANRESVVSLVKGIKIIVDVVLKGKGNAEATKTGDDKKDIGNLFADDNGKGDAKEENIAKASASIGAVIGADILQAIAKSKEDPKDYATDGIEKATDAAEIAIAKAVNAKKEIKEESAKKDAVIAAGIALRGMAKDGKFAANQSAKDANAVNGAVASAVNKVLSTLTIAIRNTVDLGLKEINKVLGEIKEGEGFEVKTN
SIO_010081: BRE_RS05135
subclass of: SO_0000673
so part of: BRE_RS05135
location: 30086..31084
location: region:30086-31084:1
so has part: feature:30086-31084:1:exon

WP_049752025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30086-31084:1:exon

BRE_RS05140
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05140
old locus tag: BRE_5030
pseudo: true
so part of: sequence
location: 31339..31943
location: region:31339-31943:1
so has part: feature:31339-31943:1:exon
subclass of: SO_0000010

position:31339:1
position: 31339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31943:1
position: 31943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31339-31943:1:exon

BRE_RS05140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05140
old locus tag: BRE_5030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539714.1
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Vsp/OspC family lipoprotein
SIO_010081: BRE_RS05140
subclass of: SO_0000673
so part of: BRE_RS05140
location: 31339..31943
location: region:31339-31943:1
so has part: feature:31339-31943:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31339-31943:1:exon

BRE_RS05145
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS05145
pseudo: true
so part of: sequence
location: <32518..>33213
location: region:32518-33213:1
so has part: feature:32518-33213:1:exon
subclass of: SO_0000010

position:32518:1
position: 32518
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32518-33213:1:exon

BRE_RS05145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS05145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539552.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS05145
subclass of: SO_0000673
so part of: BRE_RS05145
location: <32518..>33213
location: region:32518-33213:1
so has part: feature:32518-33213:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32518-33213:1:exon