Borrelia recurrentis A1 plasmid pl33, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP000996.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539625.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539799.1
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539341.1
COORDINATES: protein motif:HMM:NF017525.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013114.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539716.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539526.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683279.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539795.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539580.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539794.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539593.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539582.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539789.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687021.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539585.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539509.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539602.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696744.1
COORDINATES: protein motif:HMM:NF036421.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539611.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539497.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539550.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633355.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539528.1
GO:0009279 - cell outer membrane [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014696701.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539552.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.