Borrelia recurrentis A1 plasmid pl23, complete sequence.
type: Entry
definition: Borrelia recurrentis A1 plasmid pl23, complete sequence.
sequence version: NC_011252.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_011252.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603586
keyword: RefSeq
source: Borrelia recurrentis A1
organism: Borrelia recurrentis A1
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000995.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22945
topology: linear
so has quality: SO_0000987
location: 1..22945
location: region:1-22945:1
RO_0002162: 412418

NC_011252
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603586
type: BioSample
SIO_000068: biosample

1
title: The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
author: Lescot, M.
author: Audic, S.
author: Robert, C.
author: Nguyen, T.
author: Blanc, g.
author: Cutler, S.J.
author: Wincker, P.
author: Couloux, A.
author: Claverie, J.-M.
author: Raoult, D.
author: Drancourt, M.
journal: PLoS 4 (9), e1000185 (2008)
comments: Publication Status: Online-Only

2
title: Direct Submission
author: Audic, S.
journal: Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22945:1
position: 22945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22945:1:source
so part of: sequence
organism: Borrelia recurrentis A1
mol type: genomic DNA
strain: A1
plasmid: pl23

412418
type: Taxonomy
SIO_000068: taxonomy

BRE_RS06570
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06570
so part of: sequence
location: complement(1296..1493)
location: region:1296-1493:-1
so has part: feature:1296-1493:-1:exon
subclass of: SO_0000010

position:1296:-1
position: 1296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1493:-1
position: 1493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1296-1493:-1:exon

BRE_RS06570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKENDSNNILLVQIMISVFESIFLNQGDIRDVKENARKLFFYRRGKELLNSIDELYVVYHIARLN
SIO_010081: BRE_RS06570
subclass of: SO_0000673
so part of: BRE_RS06570
location: complement(1296..1493)
location: region:1296-1493:-1
so has part: feature:1296-1493:-1:exon

WP_232212753.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1296-1493:-1:exon

BRE_RS04895
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04895
old locus tag: BRE_6001
so part of: sequence
location: complement(1509..2237)
location: region:1509-2237:-1
so has part: feature:1509-2237:-1:exon
subclass of: SO_0000010

position:1509:-1
position: 1509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2237:-1
position: 2237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1509-2237:-1:exon

BRE_RS04895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04895
old locus tag: BRE_6001
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRYNDVFILLMLISIVSCKNAVDGTKTVKDVNGNARNGSRAKSDFVVANGLDIRNGPALENNSGIDNANIRNDVDRLSKDDIVQLKTFITKSVKYARSLCLLIQEYHTIYSFLKNYVYCVNGSGNCDNAKLTKESIDVIVKMKVDNIVDKLENILNYFKIHNPKMRIDSIEQLKKIFKYHVNFVFDSNEIKMDQVVDVVKLIINAYENVIDTAVNMYADMFSFIVSQCSSKKLAEISKNFV
SIO_010081: BRE_RS04895
subclass of: SO_0000673
so part of: BRE_RS04895
location: complement(1509..2237)
location: region:1509-2237:-1
so has part: feature:1509-2237:-1:exon

WP_232212754.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1509-2237:-1:exon

BRE_RS04900
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
gene: guaB
locus tag: BRE_RS04900
old locus tag: BRE_6002
pseudo: true
so part of: sequence
location: complement(2537..3990)
location: region:2537-3990:-1
so has part: feature:2537-3990:-1:exon
subclass of: SO_0000010

position:2537:-1
position: 2537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3990:-1
position: 3990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2537-3990:-1:exon

BRE_RS04900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
gene: guaB
locus tag: BRE_RS04900
old locus tag: BRE_6002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539343.1
GO function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO process: GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IMP dehydrogenase
SIO_010081: BRE_RS04900
subclass of: SO_0000673
so part of: BRE_RS04900
location: complement(2537..3990)
location: region:2537-3990:-1
so has part: feature:2537-3990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2537-3990:-1:exon

BRE_RS04905
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04905
old locus tag: BRE_6003
pseudo: true
so part of: sequence
location: complement(4020..>4535)
location: region:4020-4535:-1
so has part: feature:4020-4535:-1:exon
subclass of: SO_0000010

position:4020:-1
position: 4020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4535:-1
position: 4535
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4020-4535:-1:exon

BRE_RS04905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04905
old locus tag: BRE_6003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002664503.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: GMP synthase (glutamine-hydrolyzing)
SIO_010081: BRE_RS04905
subclass of: SO_0000673
so part of: BRE_RS04905
location: complement(4020..>4535)
location: region:4020-4535:-1
so has part: feature:4020-4535:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4020-4535:-1:exon

BRE_RS04910
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04910
old locus tag: BRE_6004
so part of: sequence
location: complement(5082..6437)
location: region:5082-6437:-1
so has part: feature:5082-6437:-1:exon
subclass of: SO_0000010

position:5082:-1
position: 5082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6437:-1
position: 6437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5082-6437:-1:exon

BRE_RS04910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04910
old locus tag: BRE_6004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539671.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NCS2 family permease
translation: MSDNNETLISQIKNNSIDYKTEIIAGITTFLSMAYIIVVNPYILSHAGMPIGALVTATCLTAGFAAIFMGFYTNTPLALASGMGINAFFAFSVVKGMNIPWEIALGAVFIEGIIFIVLSLSGMREEIVNAIPGNLRCAITVGIGLFIAFIGFVNSEIIVRNESTLVGLGHIMNFKVLLTLLGIIAIFVFELKMMKGSILLSICMTTLIAWCYALFDRNAALNMGIRLPDGFLRYESIAPIFNKLSFEYVLGKNFWSFSFIVFILLFNDLFDTIGTLVGVASKGNLVDSRGKIRNANKILLVDAVATTFGALLGVSPVTTYIESSTGIAEGGKTGFTSVVTGILFILSVFFAPLFVAVPTGATSAALIYVGFFMCKDIKNIDFANIREAIPSFLILFLIPLTYSIAVGIGVGIIFYVIISVLYGLITREGIKVSPVIFLLFFIFVLKLIFSH
SIO_010081: BRE_RS04910
subclass of: SO_0000673
so part of: BRE_RS04910
location: complement(5082..6437)
location: region:5082-6437:-1
so has part: feature:5082-6437:-1:exon

WP_012539558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5082-6437:-1:exon

BRE_RS04915
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04915
old locus tag: BRE_6005
so part of: sequence
location: complement(6559..7017)
location: region:6559-7017:-1
so has part: feature:6559-7017:-1:exon
subclass of: SO_0000010

position:6559:-1
position: 6559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7017:-1
position: 7017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6559-7017:-1:exon

BRE_RS04915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04915
old locus tag: BRE_6005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687067.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKFIKYFILLHFVFLMFSCETIDLKDIDKDLEGLSKNSKYIRLIFGNNKISLRHYFTIAGKFHLRYKEPLFLKCDNDIVALFLFRRYKRIGSGYIQTFFSVGKDVSLKVYLELVRRKKFFIINSAGQVLKTIIFSNNSNSEDVLLQNNKII
SIO_010081: BRE_RS04915
subclass of: SO_0000673
so part of: BRE_RS04915
location: complement(6559..7017)
location: region:6559-7017:-1
so has part: feature:6559-7017:-1:exon

WP_012539559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6559-7017:-1:exon

BRE_RS04920
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04920
old locus tag: BRE_6006
so part of: sequence
location: complement(7056..7568)
location: region:7056-7568:-1
so has part: feature:7056-7568:-1:exon
subclass of: SO_0000010

position:7056:-1
position: 7056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7568:-1
position: 7568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7056-7568:-1:exon

BRE_RS04920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04920
old locus tag: BRE_6006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687066.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRYSFFLFVLFFFSCKTLSVHEILDKKFDKIERASYFLYFYPNSQIYIKRDKLTNNFSVFLNIVLNLDLKSDFNSDYLKLIQDGNYIGNVSISKVVSIGRFRFLYVNIDRGNSDLILRALNPHKSLSFVLDEYSYQVWTRETLEYDAKFIDVDFESSRNTLKYVLDNNIL
SIO_010081: BRE_RS04920
subclass of: SO_0000673
so part of: BRE_RS04920
location: complement(7056..7568)
location: region:7056-7568:-1
so has part: feature:7056-7568:-1:exon

WP_012539560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7056-7568:-1:exon

BRE_RS04925
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04925
old locus tag: BRE_6007
so part of: sequence
location: 7615..8073
location: region:7615-8073:1
so has part: feature:7615-8073:1:exon
subclass of: SO_0000010

position:7615:1
position: 7615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8073:1
position: 8073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7615-8073:1:exon

BRE_RS04925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04925
old locus tag: BRE_6007
inference: COORDINATES: protein motif:HMM:NF017885.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ImmA/IrrE family metallo-endopeptidase
translation: MKSNNFSSYIKTPYIYSDYIISKYAVLLIPVPIIKIVIGEGLKVFEITFEKKYKNFSGYIKPNKKAIYINETMNLTNKRFAIAQQLGHYLMHKYQVFNPSKRTDIINTKDNNMTIEANIFATNLLIPTTTLKLKVPQYKSIRYPQKIMAKEF
SIO_010081: BRE_RS04925
subclass of: SO_0000673
so part of: BRE_RS04925
location: 7615..8073
location: region:7615-8073:1
so has part: feature:7615-8073:1:exon

WP_232212755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7615-8073:1:exon

BRE_RS06575
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06575
so part of: sequence
location: 8107..8301
location: region:8107-8301:1
so has part: feature:8107-8301:1:exon
subclass of: SO_0000010

position:8107:1
position: 8107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8301:1
position: 8301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8107-8301:1:exon

BRE_RS06575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNEIHKIEKENKIQKKLKTKQIDRTKAKDLLLQNIDQLKKSIAIDLEKREITRKASIKKFLKN
SIO_010081: BRE_RS06575
subclass of: SO_0000673
so part of: BRE_RS06575
location: 8107..8301
location: region:8107-8301:1
so has part: feature:8107-8301:1:exon

WP_232212756.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8107-8301:1:exon

BRE_RS04930
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04930
old locus tag: BRE_6008
so part of: sequence
location: complement(8318..8818)
location: region:8318-8818:-1
so has part: feature:8318-8818:-1:exon
subclass of: SO_0000010

position:8318:-1
position: 8318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8818:-1
position: 8818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8318-8818:-1:exon

BRE_RS04930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04930
old locus tag: BRE_6008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539675.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDKFDSNDDFNFLTLRELMAYPELRISGIDLKKYAVLNDLYNNNFEFIKGDQEGFVSISDSSYNSNIEYIKKLYLYNKKLYKIIVAYSIVQGSSFKSEILKYFDRHNIKEKFPLRINVPFYRTNIGDKSWVVIKKNFLDLLIQDKRSLFVAKRKLENMLEIFSVQ
SIO_010081: BRE_RS04930
subclass of: SO_0000673
so part of: BRE_RS04930
location: complement(8318..8818)
location: region:8318-8818:-1
so has part: feature:8318-8818:-1:exon

WP_232212757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8318-8818:-1:exon

BRE_RS04935
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04935
old locus tag: BRE_6009
so part of: sequence
location: 8981..10237
location: region:8981-10237:1
so has part: feature:8981-10237:1:exon
subclass of: SO_0000010

position:8981:1
position: 8981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10237:1
position: 10237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8981-10237:1:exon

BRE_RS04935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04935
old locus tag: BRE_6009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014654069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ankyrin repeat domain-containing protein
translation: MSYHTLSNISIYVGYIIIGITSFTIFNTNLRIKIKNKMKKLSFLYYMTLFIFFIIATNLSHYFSEKQLLEDFQKFKKDFFEIHQINETFLKKYILPLKEPIKMELMSKLNPINTIFNASIEKYSQKINKTPTDIKKNYDAYIKATNTEIKSKISQLEREILPMYNKYKLPCSNNQISNISVDKDGNIIPILRNSEGKITNLLFYDQTYNLTLFKVYNNHKVKFEITKNDNNYFKELINVYYIDSHNTKRNIDYYKNNIDTIPYYIDLTENQDNFLKSIKIKNEYKEYIKEKNKLKILINNDKLNDFKTFLKQNPNTFSLNTIFSDGNPVLIYAIKSKAKNIINHIMSKDFNINLTDQENKTALHHAIINEYDITFIKSLITKGANPHIKDLTKKLPSDYTPKDGEIYQYLHIYNNKNN
SIO_010081: BRE_RS04935
subclass of: SO_0000673
so part of: BRE_RS04935
location: 8981..10237
location: region:8981-10237:1
so has part: feature:8981-10237:1:exon

WP_012539562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8981-10237:1:exon

BRE_RS04940
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04940
old locus tag: BRE_6010
so part of: sequence
location: 11054..12685
location: region:11054-12685:1
so has part: feature:11054-12685:1:exon
subclass of: SO_0000010

position:11054:1
position: 11054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12685:1
position: 12685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11054-12685:1:exon

BRE_RS04940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04940
old locus tag: BRE_6010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539563.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO process: GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PTS transporter subunit EIIC
translation: MSILSKSIFTTLQKVGKAFMLPIALLPIAGLLLGIGSALTNKTMIQTYGIEALFGEKTIMHATLSLIKYTGEVIFANLPLMFAIAIPIGLAKAEKGTAALAGVIGFLVMHQTINGVLSIQGITPATTNVEALLAIGTTEAEAISKSQEYTNVLGIFSLQMSVMGGMIAGFIAAMLHNKLHNIHLPTFLAFFGGSRFIPIITTLVMFIVGIILTCIWPFIQGMMTSLGNIIEKSGYFGSFAYGAIKRSLIPFGLHHIFYMPFWQTSLGGTMEINGELISGAQNIFFKQLADPNTTHFEVTKGTRFFSGEFIVMIFGLPGAALAMYHTAKTENKKDAASLLISAGFTSMLTGITEPLEFAFLFAAPALYYLIYVPLFGLAHLLAHIFNIGVGLTFSGGLIDMFLFGILQGNSKTTWIMIPTIGIFYFIGFYYIFKLAIIKFNLKTPGREDIEEDIIKTNPHKTKISEIARKVLEGLGGKGNITYLDACASRLRINVNQIELVKSDIYFKSIGASGMLKKGNDIQIVFGGVSDNIRMEINKIQIIK
SIO_010081: BRE_RS04940
subclass of: SO_0000673
so part of: BRE_RS04940
location: 11054..12685
location: region:11054-12685:1
so has part: feature:11054-12685:1:exon

WP_012539563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11054-12685:1:exon

BRE_RS04945
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04945
old locus tag: BRE_6011
so part of: sequence
location: 12768..13052
location: region:12768-13052:1
so has part: feature:12768-13052:1:exon
subclass of: SO_0000010

position:12768:1
position: 12768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13052:1
position: 13052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12768-13052:1:exon

BRE_RS04945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04945
old locus tag: BRE_6011
EC number: 3.6.1.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539564.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acylphosphatase
translation: MMHKYQYFISGKVQGIGFRFFTEQIAKKIGIKGFVKNLDDGRVEIIAFFINNKQIDSFENALKKGNGYSKIHKIEKKILDTKYPFDFKNFCSYY
SIO_010081: BRE_RS04945
subclass of: SO_0000673
so part of: BRE_RS04945
location: 12768..13052
location: region:12768-13052:1
so has part: feature:12768-13052:1:exon

WP_012539564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12768-13052:1:exon

BRE_RS04950
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04950
old locus tag: BRE_6012
so part of: sequence
location: complement(13027..13485)
location: region:13027-13485:-1
so has part: feature:13027-13485:-1:exon
subclass of: SO_0000010

position:13027:-1
position: 13027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13485:-1
position: 13485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13027-13485:-1:exon

BRE_RS04950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04950
old locus tag: BRE_6012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDTGFLYFFKKALSVDDNRMVYISYLYDNLVSIQPMQDWLKIDFRDSKRGKKYFFLFQRNKLNGEFISCNFLRTETNHALDIKFSDGNLNIFCKDRKSLEFLKFRVEHFFKSSTKSLKVVSKSNNKPKVGKIKVIKANIRKNININNKNKNF
SIO_010081: BRE_RS04950
subclass of: SO_0000673
so part of: BRE_RS04950
location: complement(13027..13485)
location: region:13027-13485:-1
so has part: feature:13027-13485:-1:exon

WP_041178226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13027-13485:-1:exon

BRE_RS04955
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04955
old locus tag: BRE_6013
so part of: sequence
location: complement(13574..14923)
location: region:13574-14923:-1
so has part: feature:13574-14923:-1:exon
subclass of: SO_0000010

position:13574:-1
position: 13574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14923:-1
position: 14923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13574-14923:-1:exon

BRE_RS04955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04955
old locus tag: BRE_6013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687064.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protelomerase family protein
translation: MSLKVNIKKDLELFRKNLEEIYVKYLKQEISYSKLKMGLEMLAEKHKNILLRKNKFTNLSMILNLSKTRKIIKEYINLAVIEEIRQKNKLLFFWIPKEIKELSNIDIKDLCKIEELMIANNILGQKVYFESFLGLFKSPEWLNDYAHHYKISKINSYRREQISVKINLKTYIKIINILLTQKRDIRLKFYGVLMATGRRPVEIMKVSEFYVQDDEHILMKHIAKKKEHNLIHEIVFPTFADSRLVIDSISKIRYMERTEKLSKEIISSNLAYSYNRLFRKIFENIFEPEESIYFCRRLYSRFSYLAFAPKNMELNLWITTVLGHEHDDIITAFHYNRYILENLDDNADVDLLKLLNKRIHTYVRRKTTYSVVNMERLNTLLESCNIVDDNYIKTLRVIQEFMIEKGLAELEMLRGLNVKIRKLFKQKYGYNYNYAKLGEYLSLIFGYDT
SIO_010081: BRE_RS04955
subclass of: SO_0000673
so part of: BRE_RS04955
location: complement(13574..14923)
location: region:13574-14923:-1
so has part: feature:13574-14923:-1:exon

WP_041178227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13574-14923:-1:exon

BRE_RS04960
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04960
old locus tag: BRE_6014
so part of: sequence
location: complement(15020..15661)
location: region:15020-15661:-1
so has part: feature:15020-15661:-1:exon
subclass of: SO_0000010

position:15020:-1
position: 15020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15661:-1
position: 15661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15020-15661:-1:exon

BRE_RS04960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04960
old locus tag: BRE_6014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539680.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGVVYKFFLSFIFIFFSCNFDVSSKFFTPLEDAIKLEISRYESLGNNKFKTYLHSKNYFESVKDINGYSYYFILDKTTKSIVMEIILFSRIAVLLDYKFGFIFNFGFNFDFLNVISPNVFEFQVKKLFKKKVSLGLGNGLDIKNDRQISTYNFNLQHVEEINREFENRNHKDDLNSSTSELMYFVGSSEYSVLRETYIVLYYYVFKAIERFMQ
SIO_010081: BRE_RS04960
subclass of: SO_0000673
so part of: BRE_RS04960
location: complement(15020..15661)
location: region:15020-15661:-1
so has part: feature:15020-15661:-1:exon

WP_012539567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15020-15661:-1:exon

BRE_RS04965
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04965
old locus tag: BRE_6015
so part of: sequence
location: 15925..16863
location: region:15925-16863:1
so has part: feature:15925-16863:1:exon
subclass of: SO_0000010

position:15925:1
position: 15925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16863:1
position: 16863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15925-16863:1:exon

BRE_RS04965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04965
old locus tag: BRE_6015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539568.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MRRKKINKIPFNKVVDRRLKVFWVIKKLQHNYFTNKKRYSLRNVVIMVNSILEKNGFKTVTRRTIQSDITSIEKIGLLKTDFNPLGKNNGSFTYYIINKNLEKMANKAISTAYFIQKKKNTEQAIDKAINKDKLKEQKQQFKISHQIFSCLLSYKKDKYYRYKNSYFKKKKNGTEHLEKIILQKFNITKKDLSEIRNIVKTQLSYKNTLWNLKDFMEALREYKENDVVVFFKTFLKKKRDKIWFMSKRGVKTDFNFMIGSFKDKNKTKAQQMYQNQRKIVAPKMNYIDDPNKIVKVSDLVSDIIKAKNLISS
SIO_010081: BRE_RS04965
subclass of: SO_0000673
so part of: BRE_RS04965
location: 15925..16863
location: region:15925-16863:1
so has part: feature:15925-16863:1:exon

WP_012539568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15925-16863:1:exon

BRE_RS04970
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04970
old locus tag: BRE_6016
so part of: sequence
location: 16886..17446
location: region:16886-17446:1
so has part: feature:16886-17446:1:exon
subclass of: SO_0000010

position:16886:1
position: 16886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17446:1
position: 17446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16886-17446:1:exon

BRE_RS04970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04970
old locus tag: BRE_6016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539569.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MATCELKAKLLARRLELNKANNNFFKRIEDKNYKKMYHTKIFSMINNFEAKPNKGKFWLCFRNVFDPTKCESLHLFHMRQGDRFMGIYYGFAKLPKPFIVHYKENEVRKTSKIIKIYYIEFRFKKGSVFCYLRSLCTLLQSKNKEKNFYNSLLSRTLKLEKEVHRFYGKEYFEDKGILKWIKENQK
SIO_010081: BRE_RS04970
subclass of: SO_0000673
so part of: BRE_RS04970
location: 16886..17446
location: region:16886-17446:1
so has part: feature:16886-17446:1:exon

WP_012539569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16886-17446:1:exon

BRE_RS04975
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04975
old locus tag: BRE_6017
so part of: sequence
location: 17422..18186
location: region:17422-18186:1
so has part: feature:17422-18186:1:exon
subclass of: SO_0000010

position:17422:1
position: 17422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18186:1
position: 18186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17422-18186:1:exon

BRE_RS04975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04975
old locus tag: BRE_6017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539570.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDKRKPKIITVASIKGGVGKSTTALFFSNILSSKNYKVLLIDLDPQASSTSFYINIIKGQNVDIKKINIYRVLKKGLDIENAVINVNTNIDFIASHLSLSQFNEENISLKESLLKIFLSYIKYRYDFIIMDTAPTLGSLLNNSLIITDYLIVPLPTDQWAIESLDLITNRLRDIFRNELPMFYLVTNLVERQNIDRELKNFIESEYKDNFLGSVPKRDNLRKTVFYRNNFNPNEDYYKAYEGILDTFLKKIYHN
SIO_010081: BRE_RS04975
subclass of: SO_0000673
so part of: BRE_RS04975
location: 17422..18186
location: region:17422-18186:1
so has part: feature:17422-18186:1:exon

WP_012539570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17422-18186:1:exon

BRE_RS04980
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04980
old locus tag: BRE_6018
so part of: sequence
location: 18245..18796
location: region:18245-18796:1
so has part: feature:18245-18796:1:exon
subclass of: SO_0000010

position:18245:1
position: 18245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18796:1
position: 18796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18245-18796:1:exon

BRE_RS04980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04980
old locus tag: BRE_6018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014687058.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MSKNKKIEIVRRIDLELDGIKEFNKTREERYLELKEKLKVLIKEESYNKIETARIFKEINESKYYALDGYKSFASFIKSYKIAKTSIYRYIKLVAGIDSGKIDYDLILNRGVDYAIQVLENGHLLCKSSAKPLKSLRFRLDDEESFSFYRSNIKFASFLLQEVYKIEKDFFYKMQDRYNSLKT
SIO_010081: BRE_RS04980
subclass of: SO_0000673
so part of: BRE_RS04980
location: 18245..18796
location: region:18245-18796:1
so has part: feature:18245-18796:1:exon

WP_041178228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18245-18796:1:exon

BRE_RS04985
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04985
old locus tag: BRE_6019
so part of: sequence
location: complement(19198..19737)
location: region:19198-19737:-1
so has part: feature:19198-19737:-1:exon
subclass of: SO_0000010

position:19198:-1
position: 19198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19737:-1
position: 19737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19198-19737:-1:exon

BRE_RS04985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04985
old locus tag: BRE_6019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539685.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLYSFKNLKQTTMLLISLFLACSSIDIEHDTINKKVRIYQYLNKNLELKGVIDYQNNTTQIFLHTKLKNHSIIKQTPLILPDTTKIEGKTSYEYDNKSSSGKWVNASSFILNKPILEKLLNEDEYVYNKEDVKIQVGLETLKMNKAKIKNFLIKLNITEKQYIKNKHTEKQNIKKYKEL
SIO_010081: BRE_RS04985
subclass of: SO_0000673
so part of: BRE_RS04985
location: complement(19198..19737)
location: region:19198-19737:-1
so has part: feature:19198-19737:-1:exon

WP_012539572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19198-19737:-1:exon

BRE_RS04990
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS04990
old locus tag: BRE_6020
so part of: sequence
location: 20295..21386
location: region:20295-21386:1
so has part: feature:20295-21386:1:exon
subclass of: SO_0000010

position:20295:1
position: 20295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21386:1
position: 21386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20295-21386:1:exon

BRE_RS04990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS04990
old locus tag: BRE_6020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539573.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MKRGIKGEMINRVMIIMVLVMVMMGCNSGGGIKEGEGESSQSKFLKSIIGLRNEFLNVFTSFGDMVGGILGFNAVKSDDKRSKVGEHFKTIGDGLKSTKDKLDELSKQIVSTSNADIKGVEAVIQGTSEVIAKLITSITELAGITKEGNVDIGDAGTAGSAAAVAADKASVEAIIKGVKEIVETAEKSGVKIEKGNAGNSVANGNGPKAVVHNVQATAGDATKLAGEVAKADPWAMIDKIKNAKTKNNVAPAANDDAGQLATATGANDNGSASTNADLAASVALKAMTKGGKFTQPAANEDGAIKAAAASAVNKVLGILDMIIRKAVNLELDKVKEAVKGIRYSETSGSNATEAGTIQTSTVK
SIO_010081: BRE_RS04990
subclass of: SO_0000673
so part of: BRE_RS04990
location: 20295..21386
location: region:20295-21386:1
so has part: feature:20295-21386:1:exon

WP_012539573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20295-21386:1:exon

BRE_RS06030
type: Gene
subclass of: SO_0000704
RO_0002162: 412418
locus tag: BRE_RS06030
pseudo: true
so part of: sequence
location: <21516..21851
location: region:21516-21851:1
so has part: feature:21516-21851:1:exon
subclass of: SO_0000010

position:21516:1
position: 21516
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:21851:1
position: 21851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21516-21851:1:exon

BRE_RS06030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 412418
locus tag: BRE_RS06030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539666.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: variable large family protein
SIO_010081: BRE_RS06030
subclass of: SO_0000673
so part of: BRE_RS06030
location: <21516..21851
location: region:21516-21851:1
so has part: feature:21516-21851:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21516-21851:1:exon