Borrelia recurrentis A1 plasmid pl124, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degradated subset of tick-borne Borrelia duttonii
Submitted (17-MAR-2008) Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP000994.1.\nDNA/Bacteria source is available for Michel Drancourt, Unite de\nRecherche sur les Maladies Infectieuses et Tropicales Emergentes,\nFaculte de Medecine, Marseille, France:\nmichel.drancourt@medecine.univ-mrs.fr\nPlasmid sequence lacks part of the telomeres.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:15:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,230\nCDSs (total) :: 1,192\nGenes (coding) :: 1,099\nCDSs (with protein) :: 1,099\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 59 of 93\nPseudo Genes (incomplete) :: 46 of 93\nPseudo Genes (internal stop) :: 32 of 93\nPseudo Genes (multiple problems) :: 35 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014683120.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539256.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539259.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539380.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539261.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539384.1
COORDINATES: protein motif:HMM:NF033573.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539264.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539265.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539389.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683135.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539268.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539392.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683140.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539395.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539396.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539398.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683145.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683147.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683148.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539402.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683152.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004563551.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539409.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683157.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683158.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683159.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539290.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_001215827.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014683161.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_014683162.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014683163.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539415.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683166.1
COORDINATES: protein motif:HMM:NF016969.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683168.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539421.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695348.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683172.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539308.1
COORDINATES: protein motif:HMM:NF014983.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539431.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539432.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683185.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539314.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683191.1
COORDINATES: protein motif:HMM:NF028354.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683197.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258365.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012539444.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683200.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539325.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683202.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539451.1
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014683204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683205.1
COORDINATES: protein motif:HMM:NF017093.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539331.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022387.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539457.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539459.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683214.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539462.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539464.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539339.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539340.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539341.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539470.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539343.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014687072.1