Priestia aryabhattai strain K13 plasmid unnamed2.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Priestia.
Complete genome sequence of Bacillus aryabhattai K13 isolated from compost
Submitted (16-OCT-2017) Division of Biotechnology, Chonbuk National University, 79 Gobong-ro, Iksan, Jeonbuk 54596, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP024037.1.\nBacteria and source DNA available from Prof. Chae J.-C.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 124.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/15/2023 11:37:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,488\nCDSs (total) :: 5,310\nGenes (coding) :: 5,268\nCDSs (with protein) :: 5,268\nGenes (RNA) :: 178\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 130\nncRNAs :: 6\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 15 of 42\nPseudo Genes (incomplete) :: 22 of 42\nPseudo Genes (internal stop) :: 11 of 42\nPseudo Genes (multiple problems) :: 5 of 42\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_003351317.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013060496.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462144.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_017381317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462077.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462079.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766745.1
DUF1796 family putative cysteine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_016094040.1
COORDINATES: protein motif:HMM:NF027263.2
type II toxin-antitoxin system RnlB family antitoxin
COORDINATES: protein motif:HMM:NF012304.2
COORDINATES: similar to AA sequence:RefSeq:WP_016766105.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014462089.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462090.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462092.1
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013060409.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462094.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013060407.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462098.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462099.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462100.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462102.1
COORDINATES: similar to AA sequence:RefSeq:WP_016742226.1
COORDINATES: protein motif:HMM:NF025171.2
COORDINATES: similar to AA sequence:RefSeq:WP_014462105.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462106.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462107.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462108.1
COORDINATES: similar to AA sequence:RefSeq:WP_020062096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462110.1
COORDINATES: similar to AA sequence:RefSeq:WP_016115663.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462113.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462114.1
COORDINATES: similar to AA sequence:RefSeq:WP_017754047.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060435.1
COORDINATES: similar to AA sequence:RefSeq:WP_014641764.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060498.1
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_013060431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060430.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060426.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462124.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060423.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060422.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_014462129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462130.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462131.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462132.1
COORDINATES: similar to AA sequence:RefSeq:WP_009334809.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462134.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_014462135.1
COORDINATES: similar to AA sequence:RefSeq:WP_019394649.1
COORDINATES: similar to AA sequence:RefSeq:WP_014462137.1