Priestia aryabhattai strain K13 plasmid unnamed1.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Priestia.
Complete genome sequence of Bacillus aryabhattai K13 isolated from compost
Submitted (16-OCT-2017) Division of Biotechnology, Chonbuk National University, 79 Gobong-ro, Iksan, Jeonbuk 54596, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP024036.1.\nBacteria and source DNA available from Prof. Chae J.-C.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 124.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/15/2023 11:37:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,488\nCDSs (total) :: 5,310\nGenes (coding) :: 5,268\nCDSs (with protein) :: 5,268\nGenes (RNA) :: 178\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 130\nncRNAs :: 6\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 15 of 42\nPseudo Genes (incomplete) :: 22 of 42\nPseudo Genes (internal stop) :: 11 of 42\nPseudo Genes (multiple problems) :: 5 of 42\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_016766038.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009795729.1
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: similar to AA sequence:RefSeq:WP_015594561.1
COORDINATES: similar to AA sequence:RefSeq:WP_002130039.1
COORDINATES: similar to AA sequence:RefSeq:WP_015594563.1
LytTR family transcriptional regulator DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013060018.1
COORDINATES: similar to AA sequence:RefSeq:WP_017000331.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: similar to AA sequence:RefSeq:WP_016106262.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001977300.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060064.1
COORDINATES: similar to AA sequence:RefSeq:WP_003374471.1
COORDINATES: protein motif:HMM:NF025502.2
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: similar to AA sequence:RefSeq:WP_001002334.1
COORDINATES: similar to AA sequence:RefSeq:WP_013058316.1
COORDINATES: similar to AA sequence:RefSeq:WP_002040357.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002205095.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002130404.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019392514.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392513.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392511.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392509.1
COORDINATES: similar to AA sequence:RefSeq:WP_000550850.1
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_016121223.1
COORDINATES: similar to AA sequence:RefSeq:WP_003204197.1
COORDINATES: similar to AA sequence:RefSeq:WP_016110490.1
COORDINATES: similar to AA sequence:RefSeq:WP_000286761.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018395858.1
COORDINATES: similar to AA sequence:RefSeq:WP_003291266.1
COORDINATES: similar to AA sequence:RefSeq:WP_006097593.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392495.1
COORDINATES: similar to AA sequence:RefSeq:WP_001995811.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_000065577.1
COORDINATES: similar to AA sequence:RefSeq:WP_000636549.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_003182162.1
COORDINATES: similar to AA sequence:RefSeq:WP_012209765.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_013059933.1
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: similar to AA sequence:RefSeq:WP_019394141.1
COORDINATES: similar to AA sequence:RefSeq:WP_003349882.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881739.1
COORDINATES: similar to AA sequence:RefSeq:WP_013082600.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766433.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766432.1
COORDINATES: similar to AA sequence:RefSeq:WP_016764260.1
COORDINATES: similar to AA sequence:RefSeq:WP_000414361.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766408.1
COORDINATES: similar to AA sequence:RefSeq:WP_015846087.1
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: similar to AA sequence:RefSeq:WP_014458834.1
COORDINATES: protein motif:HMM:NF037852.2
COORDINATES: similar to AA sequence:RefSeq:WP_014304598.1
COORDINATES: protein motif:HMM:NF033172.0
collagen-like repeat preface domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013060179.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060178.1
COORDINATES: similar to AA sequence:RefSeq:WP_016763698.1
COORDINATES: similar to AA sequence:RefSeq:WP_016763738.1
COORDINATES: similar to AA sequence:RefSeq:WP_016763739.1
COORDINATES: similar to AA sequence:RefSeq:WP_016763740.1
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_013486832.1
COORDINATES: similar to AA sequence:RefSeq:WP_000840825.1
AlwI family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF025748.2
COORDINATES: protein motif:HMM:NF022063.2
COORDINATES: similar to AA sequence:RefSeq:WP_007085121.1
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: similar to AA sequence:RefSeq:WP_011106196.1
COORDINATES: similar to AA sequence:RefSeq:WP_011106197.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000995328.1
COORDINATES: protein motif:HMM:NF038159.1
COORDINATES: protein motif:HMM:NF039607.1
COORDINATES: similar to AA sequence:RefSeq:WP_000370432.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000429665.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245955.1
COORDINATES: similar to AA sequence:RefSeq:WP_002485397.1
COORDINATES: similar to AA sequence:RefSeq:WP_016898615.1
COORDINATES: protein motif:HMM:NF012301.2
LytTR family DNA-binding domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013083022.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766188.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766234.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013060187.1
COORDINATES: similar to AA sequence:RefSeq:WP_010173850.1
sporulation histidine kinase inhibitor Sda
COORDINATES: similar to AA sequence:RefSeq:WP_002013145.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011106194.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060188.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766114.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013060058.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060057.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013060056.1
COORDINATES: similar to AA sequence:RefSeq:WP_000411542.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766427.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766426.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766649.1
COORDINATES: similar to AA sequence:RefSeq:WP_006097689.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013060048.1
COORDINATES: protein motif:HMM:NF025162.2
COORDINATES: similar to AA sequence:RefSeq:WP_003488283.1
COORDINATES: similar to AA sequence:RefSeq:WP_015592023.1
COORDINATES: similar to AA sequence:RefSeq:WP_012260540.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060162.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060163.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013060043.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766252.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013060029.1
COORDINATES: similar to AA sequence:RefSeq:WP_001048450.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766039.1