Leptolyngbya boryana IAM M-101 plasmid pLBY.
Bacteria; Cyanobacteriota; Cyanophyceae; Pseudanabaenales; Leptolyngbyaceae; Leptolyngbya.
Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark
Submitted (12-SEP-2014) Contact:Yuichi Fujita Nagoya University, Graduate School of Bioagricultural Sciences; Chikusa-ku, Nagoya, Aichi 464-8601, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP014641.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 24x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 03:13:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,430\nCDSs (total) :: 6,350\nGenes (coding) :: 6,270\nCDSs (with protein) :: 6,270\nGenes (RNA) :: 80\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 31 of 80\nPseudo Genes (incomplete) :: 51 of 80\nPseudo Genes (internal stop) :: 14 of 80\nPseudo Genes (multiple problems) :: 13 of 80\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF027994.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017291520.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017302327.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287453.1
COORDINATES: similar to AA sequence:RefSeq:WP_012936881.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_017740939.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015205636.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017286277.1
COORDINATES: protein motif:HMM:NF020289.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611791.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017745232.1
COORDINATES: protein motif:HMM:NF027890.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF024545.2
COORDINATES: protein motif:HMM:NF012869.2
peptidase domain-containing ABC transporter
COORDINATES: protein motif:HMM:NF024829.2
COORDINATES: similar to AA sequence:RefSeq:WP_006633892.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ