Leptolyngbya boryana IAM M-101 plasmid pLBX.
Bacteria; Cyanobacteriota; Cyanophyceae; Pseudanabaenales; Leptolyngbyaceae; Leptolyngbya.
Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark
Submitted (12-SEP-2014) Contact:Yuichi Fujita Nagoya University, Graduate School of Bioagricultural Sciences; Chikusa-ku, Nagoya, Aichi 464-8601, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP014640.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 24x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 03:13:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,430\nCDSs (total) :: 6,350\nGenes (coding) :: 6,270\nCDSs (with protein) :: 6,270\nGenes (RNA) :: 80\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 31 of 80\nPseudo Genes (incomplete) :: 51 of 80\nPseudo Genes (internal stop) :: 14 of 80\nPseudo Genes (multiple problems) :: 13 of 80\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007917964.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413304.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739853.1
COORDINATES: protein motif:HMM:NF033591.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_015328966.1
COORDINATES: protein motif:HMM:NF012472.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017655432.1
COORDINATES: similar to AA sequence:RefSeq:WP_006636006.1
COORDINATES: similar to AA sequence:RefSeq:WP_004448222.1
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF017183.2
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012599324.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106234.1
COORDINATES: similar to AA sequence:RefSeq:WP_015172474.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010996831.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011084489.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017326578.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018440271.1
COORDINATES: protein motif:HMM:TIGR02397.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF005638.0
catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014786.2
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF025815.2
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557980.1
COORDINATES: similar to AA sequence:RefSeq:WP_019490948.1
COORDINATES: similar to AA sequence:RefSeq:WP_007353682.1
COORDINATES: similar to AA sequence:RefSeq:WP_006621405.1
COORDINATES: protein motif:HMM:NF018565.2
COORDINATES: protein motif:HMM:NF022657.2
COORDINATES: similar to AA sequence:RefSeq:WP_011429756.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_017291621.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011612599.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496862.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015153231.1
COORDINATES: similar to AA sequence:RefSeq:WP_011612598.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320643.1
COORDINATES: similar to AA sequence:RefSeq:WP_015125563.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313947.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017291798.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654864.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198906.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007221374.1
COORDINATES: similar to AA sequence:RefSeq:WP_015177319.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012625800.1
COORDINATES: similar to AA sequence:RefSeq:WP_012094281.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015155198.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408902.1
COORDINATES: similar to AA sequence:RefSeq:WP_011547071.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012408900.1
COORDINATES: similar to AA sequence:RefSeq:WP_019491869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408741.1
COORDINATES: similar to AA sequence:RefSeq:WP_009556755.1
COORDINATES: similar to AA sequence:RefSeq:WP_017300765.1
COORDINATES: similar to AA sequence:RefSeq:WP_015328934.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008435065.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_017289614.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159399.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016875796.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159445.1
COORDINATES: similar to AA sequence:RefSeq:WP_016862335.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159469.1
COORDINATES: similar to AA sequence:RefSeq:WP_006519475.1
COORDINATES: similar to AA sequence:RefSeq:WP_012801517.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876387.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_012627700.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015204161.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02686.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012409.2
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_019424500.1
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF020444.2
COORDINATES: similar to AA sequence:RefSeq:WP_009626042.1
fatty-acid oxidation protein subunit alpha
COORDINATES: protein motif:HMM:NF012846.2
COORDINATES: similar to AA sequence:RefSeq:WP_017292054.1
COORDINATES: protein motif:HMM:TIGR01843.1
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF020427.2
COORDINATES: protein motif:HMM:NF012402.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009554195.1
COORDINATES: protein motif:HMM:NF019095.2
COORDINATES: similar to AA sequence:RefSeq:WP_019498624.1
COORDINATES: similar to AA sequence:RefSeq:WP_002748643.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017292034.1
GO:0019867 - outer membrane [Evidence IEA]
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_017292039.1
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: protein motif:HMM:NF033558.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166248.1
COORDINATES: similar to AA sequence:RefSeq:WP_015139511.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198224.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321392.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653101.1
COORDINATES: similar to AA sequence:RefSeq:WP_015178654.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653098.1
COORDINATES: similar to AA sequence:RefSeq:WP_017317667.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_015155707.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653099.1
COORDINATES: similar to AA sequence:RefSeq:WP_019490340.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653093.1
COORDINATES: similar to AA sequence:RefSeq:WP_010996373.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186565.1
COORDINATES: protein motif:HMM:NF013648.2
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006513772.1
COORDINATES: protein motif:HMM:NF019460.2
COORDINATES: similar to AA sequence:RefSeq:WP_012627867.1
COORDINATES: similar to AA sequence:RefSeq:WP_009458452.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860219.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008055302.1
iron export ABC transporter permease subunit FetB
COORDINATES: similar to AA sequence:RefSeq:WP_006508608.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612369.1
COORDINATES: similar to AA sequence:RefSeq:WP_009631436.1
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_011317649.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012410985.1
COORDINATES: similar to AA sequence:RefSeq:WP_016874537.1
COORDINATES: similar to AA sequence:RefSeq:WP_019498347.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
PAS domain-containing hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012629146.1
COORDINATES: similar to AA sequence:RefSeq:WP_017744646.1
COORDINATES: protein motif:HMM:NF017077.2
COORDINATES: similar to AA sequence:RefSeq:WP_011020875.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512705.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168527.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017291659.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291658.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_017291657.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769063.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291655.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291654.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_012627250.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748667.1
COORDINATES: similar to AA sequence:RefSeq:WP_017286974.1
COORDINATES: protein motif:HMM:NF024884.2
COORDINATES: similar to AA sequence:RefSeq:WP_007918191.1
COORDINATES: similar to AA sequence:RefSeq:WP_099156039.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015155255.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291912.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291911.1
COORDINATES: similar to AA sequence:RefSeq:WP_017288531.1
COORDINATES: protein motif:HMM:NF024108.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF027994.2
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612014.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009630445.1
COORDINATES: similar to AA sequence:RefSeq:WP_009630444.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017291787.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_015155615.1
COORDINATES: similar to AA sequence:RefSeq:WP_015141276.1
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: protein motif:HMM:NF021897.2
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: protein motif:HMM:NF019997.2
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316582.1
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168287.1
COORDINATES: similar to AA sequence:RefSeq:WP_019505552.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017288581.1
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing DEAD/DEAH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_008950844.1
COORDINATES: protein motif:HMM:NF033546.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167077.1
COORDINATES: similar to AA sequence:RefSeq:WP_017290754.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496108.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_016859861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006458764.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320883.1
COORDINATES: similar to AA sequence:RefSeq:WP_015118953.1
COORDINATES: similar to AA sequence:RefSeq:WP_009630366.1
COORDINATES: protein motif:HMM:NF017256.2
COORDINATES: similar to AA sequence:RefSeq:WP_013335091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999550.1
HNH endonuclease domain-containing protein
COORDINATES: protein motif:HMM:NF014048.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009546840.1
COORDINATES: similar to AA sequence:RefSeq:WP_009785116.1
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: similar to AA sequence:RefSeq:WP_006102490.1
type III-B CRISPR module-associated Cmr3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015196032.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: similar to AA sequence:RefSeq:WP_009784991.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196034.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939388.1
COORDINATES: similar to AA sequence:RefSeq:WP_015125469.1
COORDINATES: similar to AA sequence:RefSeq:WP_009546838.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015116143.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019495015.1
COORDINATES: similar to AA sequence:RefSeq:WP_015216740.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291503.1
COORDINATES: protein motif:HMM:NF019493.2
COORDINATES: protein motif:HMM:NF013625.2
COORDINATES: similar to AA sequence:RefSeq:WP_015112300.1
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008189363.1
COORDINATES: protein motif:HMM:NF025869.2
COORDINATES: protein motif:HMM:NF017697.2
poly-gamma-glutamate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017292338.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201578.1
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015201577.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017713436.1
COORDINATES: similar to AA sequence:RefSeq:WP_015696776.1
COORDINATES: similar to AA sequence:RefSeq:WP_015047539.1
COORDINATES: similar to AA sequence:RefSeq:WP_017324738.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611687.1
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF013003.2
COORDINATES: similar to AA sequence:RefSeq:WP_006102419.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291542.1