Leptolyngbya boryana IAM M-101 plasmid pLBA.
Bacteria; Cyanobacteriota; Cyanophyceae; Pseudanabaenales; Leptolyngbyaceae; Leptolyngbya.
Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark
Submitted (12-SEP-2014) Contact:Yuichi Fujita Nagoya University, Graduate School of Bioagricultural Sciences; Chikusa-ku, Nagoya, Aichi 464-8601, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP014639.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 24x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 03:13:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,430\nCDSs (total) :: 6,350\nGenes (coding) :: 6,270\nCDSs (with protein) :: 6,270\nGenes (RNA) :: 80\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 31 of 80\nPseudo Genes (incomplete) :: 51 of 80\nPseudo Genes (internal stop) :: 14 of 80\nPseudo Genes (multiple problems) :: 13 of 80\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017287435.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018247.2
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: protein motif:HMM:NF015211.2
COORDINATES: similar to AA sequence:RefSeq:WP_019503225.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015207522.1
COORDINATES: protein motif:HMM:NF013704.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017321115.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879872.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014071186.1
COORDINATES: similar to AA sequence:RefSeq:WP_003153447.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287407.1
COORDINATES: similar to AA sequence:RefSeq:WP_017290079.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_017287409.1
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013388494.1
COORDINATES: protein motif:HMM:NF024922.2
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_005203048.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287479.1
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011243002.1
COORDINATES: protein motif:HMM:NF016024.2
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_006632026.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF017496.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412847.1
COORDINATES: similar to AA sequence:RefSeq:WP_002745986.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287458.1
COORDINATES: similar to AA sequence:RefSeq:WP_017290163.1