Exiguobacterium acetylicum strain SI17 plasmid p3, complete sequence.
type: Entry
definition: Exiguobacterium acetylicum strain SI17 plasmid p3, complete sequence.
sequence version: NZ_CP075900.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP075900.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN19315242
keyword: RefSeq
source: Exiguobacterium acetylicum
organism: Exiguobacterium acetylicum
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075900.1.\nBacteria and source DNA available from Institute of Fruit Tree\nResearch, Guangdong Academy of Agricultural Sciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.7\nAssembly Name :: SI17\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1160.0x\nSequencing Technology :: Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 05:22:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,553\nCDSs (total) :: 3,452\nGenes (coding) :: 3,433\nCDSs (with protein) :: 3,433\nGenes (RNA) :: 101\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 6 of 19\nPseudo Genes (incomplete) :: 13 of 19\nPseudo Genes (internal stop) :: 1 of 19\nPseudo Genes (multiple problems) :: 1 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6694
topology: circular
so has quality: SO_0000988
location: 1..6694
location: region:1-6694:1
RO_0002162: 41170

NZ_CP075900
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN19315242
type: BioSample
SIO_000068: biosample

1
title: Biocontrol using Exiguobacterium acetylicum SI17 against litchi downy blight caused by Peronophythora litchii
author: Zheng, L.
journal: Unpublished

2
title: Direct Submission
author: Zheng, L.
journal: Submitted (24-MAY-2021) Guangdong Academy of Agricultural Sciences, Institute of Fruit Tree Research, Dafeng Second, Guangzhou, Guangdong 510640, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6694:1
position: 6694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6694:1:source
so part of: sequence
organism: Exiguobacterium acetylicum
mol type: genomic DNA
strain: SI17
isolation source: litchi pericarp
plasmid: p3
country: China: Guangzhou
collection date: 2015-11-18

41170
type: Taxonomy
SIO_000068: taxonomy

KKI46_RS17270
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17270
old locus tag: KKI46_17270
so part of: sequence
location: 289..504
location: region:289-504:1
so has part: feature:289-504:1:exon
subclass of: SO_0000010

position:289:1
position: 289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504:1
position: 504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289-504:1:exon

KKI46_RS17270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17270
old locus tag: KKI46_17270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAELKKNISVRLRDDNVAEFYALREYLSSTNPLLSDLNNNQLVNYCINFTIDHYEEKIKQYQEQLKKPDNK
SIO_010081: KKI46_RS17270
subclass of: SO_0000673
so part of: KKI46_RS17270
location: 289..504
location: region:289-504:1
so has part: feature:289-504:1:exon

WP_214814073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:289-504:1:exon

KKI46_RS17275
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17275
old locus tag: KKI46_17275
so part of: sequence
location: 522..1649
location: region:522-1649:1
so has part: feature:522-1649:1:exon
subclass of: SO_0000010

position:522:1
position: 522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1649:1
position: 1649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:522-1649:1:exon

KKI46_RS17275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17275
old locus tag: KKI46_17275
inference: COORDINATES: protein motif:HMM:NF014537.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MSDLGNNVVQPPLTNRGVDDTKNHDLREPKRALVDWLQVTFPHEEFLEQLYQVLGLDISLFAEMDQGKYGYRKSVRCGHIAIYYDGKLGMGTHLEMTGQGCREYESLSPYKDSAMNTWRHLFGLFSMIEKVKYTRLDLALDVFDGSISTDRVYRHVKKKALTSQFRKVRRMTESTIKDYVRTGDTIYFGSAQSDLQIRFYDKKLERENNDKEVLVDEWTRVEFQLRDAHATMAAFHILAGANGRDDLGELIKGYLHTYLQFRTMTGDNNLSRRSMIKWYRDFLEDIERISLTSDAKDYTIDRVQEWVDRSVTPSLSTLLLANDVDPDTFISDIVRSGFGRLDSKKKNAINLHRQGLGLNPLTDDEIDQRLLSFLN
SIO_010081: KKI46_RS17275
subclass of: SO_0000673
so part of: KKI46_RS17275
location: 522..1649
location: region:522-1649:1
so has part: feature:522-1649:1:exon

WP_214814077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:522-1649:1:exon

KKI46_RS17280
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17280
old locus tag: KKI46_17280
so part of: sequence
location: 1864..2097
location: region:1864-2097:1
so has part: feature:1864-2097:1:exon
subclass of: SO_0000010

position:1864:1
position: 1864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2097:1
position: 2097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1864-2097:1:exon

KKI46_RS17280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17280
old locus tag: KKI46_17280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFVLPQVKYLEKKNLVAKRTGNPFSLITIFDEKTYTKVDLFVNDSFNDQLIKSGDVVDLVCRLSDQGNISVVGYTM
SIO_010081: KKI46_RS17280
subclass of: SO_0000673
so part of: KKI46_RS17280
location: 1864..2097
location: region:1864-2097:1
so has part: feature:1864-2097:1:exon

WP_214814080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1864-2097:1:exon

KKI46_RS17285
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17285
old locus tag: KKI46_17285
so part of: sequence
location: 2099..2662
location: region:2099-2662:1
so has part: feature:2099-2662:1:exon
subclass of: SO_0000010

position:2099:1
position: 2099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2662:1
position: 2662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2099-2662:1:exon

KKI46_RS17285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17285
old locus tag: KKI46_17285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATNTTQENLDTTSTEETPPSAETELDPSPESTSSWTPEQIDQLLEVLNTISSNQDLSKETLDEMSKSLKPQESYYKQFDILTKEEYDIKLAKELEAQKVADQEQQKALEDNAKLMQQRHKEIIEALEQVKESSSSGVTTTLSQDFKDFSEQNAKQTEDMNIFMWVAFSIFLMIVAFKSLMGRIQSL
SIO_010081: KKI46_RS17285
subclass of: SO_0000673
so part of: KKI46_RS17285
location: 2099..2662
location: region:2099-2662:1
so has part: feature:2099-2662:1:exon

WP_214814083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2099-2662:1:exon

KKI46_RS17290
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17290
old locus tag: KKI46_17290
so part of: sequence
location: 3016..3165
location: region:3016-3165:1
so has part: feature:3016-3165:1:exon
subclass of: SO_0000010

position:3016:1
position: 3016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3165:1
position: 3165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3016-3165:1:exon

KKI46_RS17290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17290
old locus tag: KKI46_17290
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEMLSGIGSEITGTITDVLPIVGPIVGAIAAIFFGFKFFKKLTGARTS
SIO_010081: KKI46_RS17290
subclass of: SO_0000673
so part of: KKI46_RS17290
location: 3016..3165
location: region:3016-3165:1
so has part: feature:3016-3165:1:exon

WP_214814085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3016-3165:1:exon

KKI46_RS17295
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17295
old locus tag: KKI46_17295
so part of: sequence
location: 3223..5145
location: region:3223-5145:1
so has part: feature:3223-5145:1:exon
subclass of: SO_0000010

position:3223:1
position: 3223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5145:1
position: 5145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3223-5145:1:exon

KKI46_RS17295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17295
old locus tag: KKI46_17295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNRLYKKILLSLLSLFLIIGCVTYQPQKADAIAGKIASYAAKKAAVWVAKETAEESIQKILKKKIDIGDPLFQKYISRVDYDLVQVDGKTFLMRNNLGAAEKKALGDQIGKVVDRMMYGENAAWLSWVDWWSIGPMLLIGNVIYSEMTDENYSFINDVLMQALIDLGFLEEPQDNFTDSKTKEPIQHYESPPPTSEPEKNLNYSQVIELKGTPSNAHSATLPLNPYRTPMAIGTYVVELVPNAPVASLFKVSSSNSWTLSRVKESPIFDFDVSGGNTFWNKFGDWEDKVDIYKNNVKTHSDLRSVDLSNFFDTTILKKINRYIYSWDKSKGQSVVILQSTVDTSVPIYKFVIKGVVNKQGISQPDQARTAFYTSPELNNVGFKVYQDYFTDRIITPPTARPAPQLKDVKPSNPKDYVSGPIINNNPNTGKPTMAIPTTVIVQDPTSTPVKSDPAGGITITKPDGTPVTDPETELEPVTNEPVVQPNPTTGEPEIIVKPNTPPEPATPPKTDPPTTENPDTGDPDTGDPETETPPTDPDDEDPTKVKWDKLKSIPTFMTTRFPFSLPWDIGRFMDAVFPDVTPITELVFEFPDIADYDTSFEIRIPEYFEPWMDFARSAFIYGFDISLVYAIYRLFGGAQ
SIO_010081: KKI46_RS17295
subclass of: SO_0000673
so part of: KKI46_RS17295
location: 3223..5145
location: region:3223-5145:1
so has part: feature:3223-5145:1:exon

WP_214814087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3223-5145:1:exon

KKI46_RS17300
type: Gene
subclass of: SO_0000704
RO_0002162: 41170
locus tag: KKI46_RS17300
old locus tag: KKI46_17300
so part of: sequence
location: 5404..6108
location: region:5404-6108:1
so has part: feature:5404-6108:1:exon
subclass of: SO_0000010

position:5404:1
position: 5404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6108:1
position: 6108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5404-6108:1:exon

KKI46_RS17300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 41170
locus tag: KKI46_RS17300
old locus tag: KKI46_17300
inference: COORDINATES: protein motif:HMM:NF017518.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zonular occludens toxin domain-containing protein
translation: MAITMYTGFVGSGKSYAATALGCNVADARLGTRWVVANFPIKKKKLMTLPALKKQFPFVYLKKRFNDPRWIFKENEELTVKFLVQESIKRGWKGNEGSALLIFDEASIPFNSREWQHKKNGESRMDWIKFLSQSRKFGYDIIFITQDGRMLDRQIRSLCEFERTHRKLNSYGLFKILPRFLTVFAGIQYWNGMKYTKGSLHLTVYSKSVADRYDTTALFDYEAPEDDLEAKYEA
SIO_010081: KKI46_RS17300
subclass of: SO_0000673
so part of: KKI46_RS17300
location: 5404..6108
location: region:5404-6108:1
so has part: feature:5404-6108:1:exon

WP_214814070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5404-6108:1:exon