Exiguobacterium acetylicum strain SI17 plasmid p1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.
Biocontrol using Exiguobacterium acetylicum SI17 against litchi downy blight caused by Peronophythora litchii
Submitted (24-MAY-2021) Guangdong Academy of Agricultural Sciences, Institute of Fruit Tree Research, Dafeng Second, Guangzhou, Guangdong 510640, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP075898.1.\nBacteria and source DNA available from Institute of Fruit Tree\nResearch, Guangdong Academy of Agricultural Sciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.7\nAssembly Name :: SI17\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1160.0x\nSequencing Technology :: Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 05:22:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,553\nCDSs (total) :: 3,452\nGenes (coding) :: 3,433\nCDSs (with protein) :: 3,433\nGenes (RNA) :: 101\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 6 of 19\nPseudo Genes (incomplete) :: 13 of 19\nPseudo Genes (internal stop) :: 1 of 19\nPseudo Genes (multiple problems) :: 1 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF037363.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
Tn7-like element transposition protein TnsE
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015863248.1
GO:0030420 - establishment of competence for transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022659.2
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: similar to AA sequence:RefSeq:WP_002193610.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392508.1
COORDINATES: similar to AA sequence:RefSeq:WP_002191972.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392505.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018395858.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024671.2
COORDINATES: similar to AA sequence:RefSeq:WP_010648716.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003728468.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015216.2
COORDINATES: similar to AA sequence:RefSeq:WP_000672080.1
mercury resistance transcriptional regulator MerR1
COORDINATES: similar to AA sequence:RefSeq:WP_000789461.1
COORDINATES: similar to AA sequence:RefSeq:WP_001265888.1
mercury resistance system substrate-binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_011999883.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000389892.1
mercury resistance transcriptional regulator MerR2
COORDINATES: similar to AA sequence:RefSeq:WP_000792368.1
COORDINATES: similar to AA sequence:RefSeq:WP_000845541.1
COORDINATES: protein motif:HMM:NF013676.2
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000043122.1
COORDINATES: similar to AA sequence:RefSeq:WP_005564688.1
COORDINATES: similar to AA sequence:RefSeq:WP_010096269.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015714362.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009498337.1
COORDINATES: similar to AA sequence:RefSeq:WP_008407198.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019414266.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009498996.1
COORDINATES: similar to AA sequence:RefSeq:WP_018393729.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002489264.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007721016.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015009285.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387302.1
GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
CopY/TcrY family copper transport repressor
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_000910568.1
COORDINATES: similar to AA sequence:RefSeq:WP_008497342.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010650485.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004436685.1
COORDINATES: protein motif:HMM:TIGR01583.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019379544.1
COORDINATES: similar to AA sequence:RefSeq:WP_012749295.1
GO:0005215 - transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009374078.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004233974.1
COORDINATES: similar to AA sequence:RefSeq:WP_008179668.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013372405.1
COORDINATES: similar to AA sequence:RefSeq:WP_017474339.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_002162296.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018782660.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF022744.2
COORDINATES: protein motif:HMM:NF012369.2
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF017760.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611934.1
COORDINATES: protein motif:HMM:NF023011.2
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_015880368.1
COORDINATES: similar to AA sequence:RefSeq:WP_015880369.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_017473922.1
GO:0019191 - cellobiose transmembrane transporter activity [Evidence IEA]; GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017426114.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015880372.1
COORDINATES: similar to AA sequence:RefSeq:WP_013486832.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012820755.1
AlwI family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_019381046.1
COORDINATES: similar to AA sequence:RefSeq:WP_002314291.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300186.1
COORDINATES: similar to AA sequence:RefSeq:WP_002333498.1
COORDINATES: similar to AA sequence:RefSeq:WP_000361059.1
COORDINATES: similar to AA sequence:RefSeq:WP_002333496.1
lincosamide nucleotidyltransferase Lnu(G)
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: similar to AA sequence:RefSeq:WP_101035417.1
ABC-F type ribosomal protection protein Msr(G)
COORDINATES: similar to AA sequence:RefSeq:WP_101035418.1