Methylobacterium organophilum strain WPA_B plasmid pB1502, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
Genome Analysis of common bacterial isolates from the International Space Station (ISS) Water Processing Assembly (WPA)
Submitted (25-FEB-2022) Biological Sciences, University of Alabama in Huntsville, 301 Sparkman Dr, Huntsville, AL 35899, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP092850.1.\nBacteria and source DNA available from NASA Marshall Space Flight\nCenter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Unicycler v. v0.4.9\nAssembly Name :: Methylobacterium B15-01564-4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 16.6x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 05:43:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,050\nCDSs (total) :: 4,971\nGenes (coding) :: 4,860\nCDSs (with protein) :: 4,860\nGenes (RNA) :: 79\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 111\nCDSs (without protein) :: 111\nPseudo Genes (ambiguous residues) :: 0 of 111\nPseudo Genes (frameshifted) :: 46 of 111\nPseudo Genes (incomplete) :: 82 of 111\nPseudo Genes (internal stop) :: 11 of 111\nPseudo Genes (multiple problems) :: 26 of 111\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007568938.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007568457.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568942.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568944.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007568947.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568952.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007568958.1
COORDINATES: similar to AA sequence:RefSeq:WP_007559621.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010687090.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007559618.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_006022393.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF022151.2
COORDINATES: similar to AA sequence:RefSeq:WP_014248213.1
COORDINATES: similar to AA sequence:RefSeq:WP_014618355.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388028.1
GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004123580.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_010219921.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013480811.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761918.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612228.1
GO:0004803 - transposase activity [Evidence IEA]