Acinetobacter junii strain YR7 plasmid pNDM-YR7, complete sequence.
Acinetobacter junii (Acinetobacter grimontii)
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Acinetobacter junii strain YR7 chromosome and plasmid pNDM-YR7
Submitted (27-JUL-2020) Institute of Quality and Standard for Agro-products, Zhejiang Academy of Agricultural Sciences, 198 Shiqiao Road, Hangzhou, Zhejiang 310021, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP059559.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: OCT-2019\nAssembly Method :: flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 800.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/15/2022 03:45:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,205\nCDSs (total) :: 3,109\nGenes (coding) :: 3,078\nCDSs (with protein) :: 3,078\nGenes (RNA) :: 96\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 13 of 31\nPseudo Genes (incomplete) :: 16 of 31\nPseudo Genes (internal stop) :: 10 of 31\nPseudo Genes (multiple problems) :: 6 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005254879.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004999734.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060718.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060717.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060716.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480466.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000189.1
COORDINATES: similar to AA sequence:RefSeq:WP_031943491.1
COORDINATES: similar to AA sequence:RefSeq:WP_004728972.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005000195.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000449.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000446.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000443.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000439.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108931.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005000436.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108929.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108928.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060713.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005404871.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108924.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015060710.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108922.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108921.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480461.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108919.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060705.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004993314.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993315.1
COORDINATES: protein motif:HMM:NF022853.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399920.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
twin-arginine translocation (TAT) pathway signal sequence domain protein
COORDINATES: similar to AA sequence:RefSeq:WP_004201168.1
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004201167.1
COORDINATES: similar to AA sequence:RefSeq:WP_032492661.1
subclass B1 metallo-beta-lactamase NDM-1
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
APH(3')-VI family aminoglycoside O-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAba14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004993319.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993231.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254881.1