Tessaracoccus flavescens strain SST-39T plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Tessaracoccus.
Tessaracoccus flavescens sp. nov., isolated from marine sediment
Int J Syst Evol Microbiol 58 (Pt 4), 785-789 (2008)
Submitted (02-FEB-2017) Department of Biology, Kyung Hee University, 1 Hoegi-dong, Dongdaemun-gu, Seoul 02447, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP019608.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Coverage :: 379.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:10:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,596\nCDSs (total) :: 3,538\nGenes (coding) :: 3,442\nCDSs (with protein) :: 3,442\nGenes (RNA) :: 58\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 25 of 96\nPseudo Genes (incomplete) :: 80 of 96\nPseudo Genes (internal stop) :: 4 of 96\nPseudo Genes (multiple problems) :: 12 of 96\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006945528.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: similar to AA sequence:RefSeq:WP_013884804.1
COORDINATES: similar to AA sequence:RefSeq:WP_015011451.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519904.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_011186898.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018926.2
COORDINATES: similar to AA sequence:RefSeq:WP_009885216.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_008709909.1
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012284418.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024212.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013073.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_013162107.1
COORDINATES: protein motif:HMM:NF039330.1
COORDINATES: similar to AA sequence:RefSeq:WP_009883844.1