Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence.
type: Entry
definition: Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence.
sequence version: NC_009958.1
sequence date: 2023-05-02
sequence: sequence
division: CON
label: NC_009958.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598387
keyword: RefSeq
source: Dinoroseobacter shibae DFL 12 = DSM 16493
organism: Dinoroseobacter shibae DFL 12 = DSM 16493
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Dinoroseobacter.
reference: 1
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000834.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4002768\nSource DNA and bacteria available from Irene Wagner-Dobler\n(Irene.Wagner-Doebler@helmholtz-hzi.de)\nContacts: Irene Wagner-Dobler\n(Irene.Wagner-Doebler@helmholtz-hzi.de)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 02:01:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,328\nCDSs (total) :: 4,274\nGenes (coding) :: 4,219\nCDSs (with protein) :: 4,219\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 20 of 55…

sequence
subclass of: SO_0000155
sequence length: 86208
topology: circular
so has quality: SO_0000988
location: 1..86208
location: region:1-86208:1
RO_0002162: 398580

NC_009958
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598387
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of chromosome of Dinoroseobacter shibae DFL 12
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Thompson, L.S.
author: Brettin, T.
author: Bruce, D.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Richardson, P.
journal: Unpublished

2
title: The Roseobacter - microalgae symbiosis: Adaptation to viral pressure, horizontal gene transfer, and ability to synthesize vitamine B12 under all conditions are revealed by the genome sequence
author: Liesegang, H.
author: Wagner-Doebler, I.
journal: Unpublished

3
title: Direct Submission
author: Liesegang, H.
author: Wagner-Doebler, I.
journal: Submitted (06-JUL-2009) HZI-Braunschweig, Braunschweig, Germany
comments: Protein update by submitter

4
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Thompson, L.S.
author: Brettin, T.
author: Bruce, D.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Richardson, P.
journal: Submitted (21-SEP-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86208:1
position: 86208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-86208:1:source
so part of: sequence
organism: Dinoroseobacter shibae DFL 12 = DSM 16493
mol type: genomic DNA
strain: DFL 12
type material: type strain of Dinoroseobacter shibae
plasmid: pDSHI04

398580
type: Taxonomy
SIO_000068: taxonomy

DSHI_RS22045
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22045
old locus tag: Dshi_4067
so part of: sequence
location: complement(42..968)
location: region:42-968:-1
so has part: feature:42-968:-1:exon
subclass of: SO_0000010

position:42:-1
position: 42
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:968:-1
position: 968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42-968:-1:exon

DSHI_RS22045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22045
old locus tag: Dshi_4067
inference: COORDINATES: protein motif:HMM:NF015437.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: autoinducer binding domain-containing protein
translation: MQHWAQTILDDSFWLTAPPPEHVRNGLERLVRLVEGSTHHVFRSKEIEQLADNLAEVEDMEEFAQLLSQLTIETGFQNYMIFIIREAQGLTSKARILTSLKEQWIKKYQAGGYQFIDPVMLKAHSSDGYFDFSETEASGPLVESFWQDAENHNVGRNGICFATTRQNGLRIGLSLYSVSNKEKVHEIKRLHGYDLYHISEIVFDSFSFLSSGPSIPEGVLNIDEIRFLRNLAISSNPSDLLKANARWGSTETMQKSIRLKLGVRSAYQAVAIAASKGWFNSLPYDKNDIISTPRALNGIQDFEPVEAE
SIO_010081: DSHI_RS22045
subclass of: SO_0000673
so part of: DSHI_RS22045
location: complement(42..968)
location: region:42-968:-1
so has part: feature:42-968:-1:exon

WP_157865455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42-968:-1:exon

DSHI_RS20455
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20455
pseudo: true
so part of: sequence
location: 1104..2064
location: region:1104-2064:1
so has part: feature:1104-2064:1:exon
subclass of: SO_0000010

position:1104:1
position: 1104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2064:1
position: 2064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1104-2064:1:exon

DSHI_RS20455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS481 family transposase
SIO_010081: DSHI_RS20455
subclass of: SO_0000673
so part of: DSHI_RS20455
location: 1104..2064
location: region:1104-2064:1
so has part: feature:1104-2064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1104-2064:1:exon

DSHI_RS22050
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22050
pseudo: true
so part of: sequence
location: complement(2074..2913)
location: region:2074-2913:-1
so has part: feature:2074-2913:-1:exon
subclass of: SO_0000010

position:2074:-1
position: 2074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2913:-1
position: 2913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2074-2913:-1:exon

DSHI_RS22050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: DSHI_RS22050
subclass of: SO_0000673
so part of: DSHI_RS22050
location: complement(2074..2913)
location: region:2074-2913:-1
so has part: feature:2074-2913:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2074-2913:-1:exon

DSHI_RS20480
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20480
old locus tag: Dshi_4071
so part of: sequence
location: 3168..6497
location: region:3168-6497:1
so has part: feature:3168-6497:1:exon
subclass of: SO_0000010

position:3168:1
position: 3168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6497:1
position: 6497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3168-6497:1:exon

DSHI_RS20480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20480
old locus tag: Dshi_4071
inference: COORDINATES: protein motif:HMM:NF024627.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ig-like domain-containing protein
translation: MSGSSYFKDYTAHQNATILVSSTEELNAAVAELAGTTGGTVLLSGEAGPYRLDARNLGDSAESAVLITSQDSNNPAQLKQVYIDNSVYLSLTDVTIDSGDYGFERSGHLHDIYVKSGAHLQFVDLTMTSTAEAPLGFDDDTVKAEDAVYLRNASDVLFADSTISNYYHGISLAGVRDTIVTGNDISALQGDGIRGGGVNNVLVSDNHIHDFLGATNEYNHPDMIQFWTGFPEGMTNTDLTITGNLLNAGEGSAAQGILVQNEAFDDAGDPLEGVYGQNLTITDNVIHSGMSNGIGIIGYQGVEVANNSVLWNEGAVLSQTADAVPASNPPWILVRNSLEVETAGNVAHLVRIETEDQAETNYFLDYDNPSAPNYAYAHVIGLAADGQTDVYDLQFRPDSPLNGVSGAEASTWTPSEAPVNAVISQQPSLEDRAAVELSARYSTVDGQLVDPETAQVFWTLADGTVLEGLEVTVTFDTPGLHEVTLDVLAPDGSSDSATRSVDIRGNGLFEADFARSETFGDGVEIVDPNGEAFSKKGVFTLDGDSVFEVTRGNPEFETLHTLSMDVSFKPDAFEKNGWLVKWLKAVDLRVTDEKGLWLKIETDADVYEIRTEGNLLEKGEWADIAVDFDSHAGQMRLSLDGEELGRTDVEGTISGSQYDLTLGEGRGRSAEGEIDYFSMTTPPAGSVLEIGDRFPEEPEEPEDETPPPVGVDDSFITDEDVKLSGDVLDNDINGQGAILTVSLLSDVSNGILLLNNDGTFDYTAAPDFNGSDSFTYTVSDGSFTDTATVSITVNYVNDNPVLTADTVTTKEDISVNIDVVVNDTDVDGDTLSVSVVGAASNGTTSINLDGTVSYTPNLHFFGTDSFIYTAYDGHGGVRSSSVTVTVDAVNDAPVIEISNFAVDEEQTTVGKIIASDVEDHDLDFAISGGADADLFDITEDGELSFLVAPDFEAPLDVGGTSGDNIYEVEVSAFDTRGALSSALFNVAVKDVDEGVRPIEVLGTGDNDVLTGTVADERLISHGGRIDRMTGGGGADEFVFGPELDNNQRELDIIYDYDTDDTIILGSDDYRLISLGNSVLIHHNDDGDLIYVLGTEAESLMIEIENSAVL
SIO_010081: DSHI_RS20480
subclass of: SO_0000673
so part of: DSHI_RS20480
location: 3168..6497
location: region:3168-6497:1
so has part: feature:3168-6497:1:exon

WP_012187371.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3168-6497:1:exon

DSHI_RS20485
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20485
pseudo: true
so part of: sequence
location: complement(6617..7764)
location: region:6617-7764:-1
so has part: feature:6617-7764:-1:exon
subclass of: SO_0000010

position:6617:-1
position: 6617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7764:-1
position: 7764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6617-7764:-1:exon

DSHI_RS20485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611345.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: DSHI_RS20485
subclass of: SO_0000673
so part of: DSHI_RS20485
location: complement(6617..7764)
location: region:6617-7764:-1
so has part: feature:6617-7764:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6617-7764:-1:exon

DSHI_RS22465
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22465
so part of: sequence
location: complement(7960..8247)
location: region:7960-8247:-1
so has part: feature:7960-8247:-1:exon
subclass of: SO_0000010

position:7960:-1
position: 7960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8247:-1
position: 8247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7960-8247:-1:exon

DSHI_RS22465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATTMPEGLPFSHHPRRTRHLLAMSHDLSSAIPFLKFMTAAEQILVSILSLIDYAETKGDECLILSAQSALKEARKELGCEAHYLNNYLTEKFGS
SIO_010081: DSHI_RS22465
subclass of: SO_0000673
so part of: DSHI_RS22465
location: complement(7960..8247)
location: region:7960-8247:-1
so has part: feature:7960-8247:-1:exon

WP_157865456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7960-8247:-1:exon

DSHI_RS20495
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20495
old locus tag: Dshi_4075
so part of: sequence
location: 8880..9245
location: region:8880-9245:1
so has part: feature:8880-9245:1:exon
subclass of: SO_0000010

position:8880:1
position: 8880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9245:1
position: 9245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8880-9245:1:exon

DSHI_RS20495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20495
old locus tag: Dshi_4075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHDHYDNFYARYFAARRMRAWARTRETAPQALLETARTHIAADLDRVYSTEDLGALEQDIAAHYGLAISVTDRFVNTGDQPHGEARWPRLMALLDTDAARAKLTAFVQTDEALLARLGLPV
SIO_010081: DSHI_RS20495
subclass of: SO_0000673
so part of: DSHI_RS20495
location: 8880..9245
location: region:8880-9245:1
so has part: feature:8880-9245:1:exon

WP_012187373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8880-9245:1:exon

DSHI_RS20500
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20500
old locus tag: Dshi_4076
so part of: sequence
location: 9370..10845
location: region:9370-10845:1
so has part: feature:9370-10845:1:exon
subclass of: SO_0000010

position:9370:1
position: 9370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10845:1
position: 10845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9370-10845:1:exon

DSHI_RS20500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20500
old locus tag: Dshi_4076
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020039273.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: capsule polysaccharide export protein
translation: MTQPKPSPQDRGPSAPEPKPGAPDRAAQQGAAASKAPGSGGQNRPGGPDGASPKARPQPVVQASKETAKKTGKDTLKDTGHKTAAPQPAQKPAQKPTPKPAPTKGQAEAAQIRIAPPVPPARRRPHHKLLMISFAIMVVVPILVSAWYLWARAQDQYASYVGFSVRTEEVGSAIELLGGITELSGSSSSDTDILYKFLQSQELVATVDAALDLRGIWSKADPEVDPIFAYDPPGTIEDLQDHWLRKVSIYYDSGSGLLDLRVLAFDPADARAIAEMIFAESSARINALSALAREDAIAYARDELTQAETRLRDARLALNEFRNRTQIVDPTIDTQGQMGLVNTLQAQLADALIEVDLLRETTRTGDPRITQGELRIAVIERRIEEERRKVGLGGGVSGDRSVFADLVGEFERLSVDLEFAQQSYVAALATFDAARNEARRQSRYLAAHVRPTLAERAEYPQRIYLLGLIGLFSFLAWTITALIAYSLRDRR
SIO_010081: DSHI_RS20500
subclass of: SO_0000673
so part of: DSHI_RS20500
location: 9370..10845
location: region:9370-10845:1
so has part: feature:9370-10845:1:exon

WP_012187374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9370-10845:1:exon

DSHI_RS20505
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20505
old locus tag: Dshi_4077
so part of: sequence
location: 10862..11521
location: region:10862-11521:1
so has part: feature:10862-11521:1:exon
subclass of: SO_0000010

position:10862:1
position: 10862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11521:1
position: 11521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10862-11521:1:exon

DSHI_RS20505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20505
old locus tag: Dshi_4077
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017999661.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MIRFENLTKRFVVKGYVKTVMENVSLTIPSKTSVALLGRNGAGKSTLLKMIAGTVDPTSGEILSSGTISWPVGFAGSFHPDMTGAQNTKFLARVYGIDTQALTDFVEDFAELGDHFRQPFRSYSSGMKSRLAFGISMGIKFDTYLVDEVTAVGDAAFKKKASAMFQDRMADAGAVFVSHSMGHVREMCDVGIVIENGQLTYHEDIHEAIAHHESNMKLR
SIO_010081: DSHI_RS20505
subclass of: SO_0000673
so part of: DSHI_RS20505
location: 10862..11521
location: region:10862-11521:1
so has part: feature:10862-11521:1:exon

WP_012187375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10862-11521:1:exon

DSHI_RS20510
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20510
old locus tag: Dshi_4078
so part of: sequence
location: 11557..11931
location: region:11557-11931:1
so has part: feature:11557-11931:1:exon
subclass of: SO_0000010

position:11557:1
position: 11557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11931:1
position: 11931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11557-11931:1:exon

DSHI_RS20510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20510
old locus tag: Dshi_4078
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYELDIPRTPIPFPRGATLLYGIGAQKAGTTWLSDLLQTSPDCHFSPIKELHYFDIMRLPGTQTIQVERIATLQRLAGELTPEQGARHRIKLRRIADLAMQLHMCTDEAPSYNGYLAYLLQGYL
SIO_010081: DSHI_RS20510
subclass of: SO_0000673
so part of: DSHI_RS20510
location: 11557..11931
location: region:11557-11931:1
so has part: feature:11557-11931:1:exon

WP_012187376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11557-11931:1:exon

DSHI_RS20515
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20515
old locus tag: Dshi_4079
so part of: sequence
location: 12125..13507
location: region:12125-13507:1
so has part: feature:12125-13507:1:exon
subclass of: SO_0000010

position:12125:1
position: 12125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13507:1
position: 13507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12125-13507:1:exon

DSHI_RS20515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20515
old locus tag: Dshi_4079
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009824789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1182 family transposase
translation: MMGPRQEAQAALFYEFSLEEHVPQDHLLRSIDRHLDLSSIRGHLADFYSHTGRPSVDPELMIRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCRLELTDRIPDHSTFSKNRHGRFRDSDLLRHVFEATVARCIEEGLVGGQGFAVDASLISADVQKQNSSNPEGWAAREIDPTDAPRAVREYLDTLDDEAFGAATTAKPKFTAHADPASQWTAARKGPAFFAYSDNYLIDTDHGIIVDVDASRSNKTAEVGAMRKMLDRTEDRFGVKPDWIAADTAYGSSDNLVWLALKRQILPFIPVFDKGERTDGTFSRSDFTWDDENDRYICPSGKEMRHTWRTYSDPARNAPAWKARRYRTRKSDCTGCALKAKCCPNSEVRAIHREKYEIVRDFARQCTASEYNPTAQRRRKKVEMLFAHLKRILGLGRLRLRGPCGVQDEFTLAATAQNLRKLAKLKPMVPATE
SIO_010081: DSHI_RS20515
subclass of: SO_0000673
so part of: DSHI_RS20515
location: 12125..13507
location: region:12125-13507:1
so has part: feature:12125-13507:1:exon

WP_012187121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12125-13507:1:exon

DSHI_RS22470
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22470
so part of: sequence
location: complement(13639..13860)
location: region:13639-13860:-1
so has part: feature:13639-13860:-1:exon
subclass of: SO_0000010

position:13639:-1
position: 13639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13860:-1
position: 13860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13639-13860:-1:exon

DSHI_RS22470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLAQRIPSQIVMHVAASVLLAANYIEVMHRIQWEFSRSTNARFLHLRKPPRPTPPKTPFKTQTVVEGFLACC
SIO_010081: DSHI_RS22470
subclass of: SO_0000673
so part of: DSHI_RS22470
location: complement(13639..13860)
location: region:13639-13860:-1
so has part: feature:13639-13860:-1:exon

WP_157865441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13639-13860:-1:exon

DSHI_RS20520
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: thiC
locus tag: DSHI_RS20520
old locus tag: Dshi_4080
so part of: sequence
location: complement(13911..15719)
location: region:13911-15719:-1
so has part: feature:13911-15719:-1:exon
subclass of: SO_0000010

position:13911:-1
position: 13911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15719:-1
position: 15719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13911-15719:-1:exon

DSHI_RS20520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: thiC
locus tag: DSHI_RS20520
old locus tag: Dshi_4080
EC number: 4.1.99.17
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020042767.1
GO function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphomethylpyrimidine synthase ThiC
translation: MKDLTPTVTTGPLPASRRVYQPGTLHPQIRVPMREIDLHPSAGEPPVTVYDSSGPYTDPSAKIAINGGLPRLRADWIAARNDIELYEGRHVRPEDNGFAEGARLVPEFPVRHKPLQAKAGRAVTQMAYARAGIITPEMEFVAIRENLGRKAAKEALVRDGQDWGAAIPDFVTPDFVREEVARGRAIIPANINHPEAEPMGIGRNFLVKINANIGNSAVTSSMEEEVEKMVWATRWGADTVMDLSTGRNIHNIRDWIIRNSAVPIGTVPLYQALEKVEGIAEDLSWEVYRDTLIEQAEQGVDYFTIHAGVRLHMIPMTIKRVTGIVSRGGSIMAKWCLHHHRESFLYEHFAEICEIARAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDCQVMIEGPGHVAMHKIKENMDKQLEVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNRDDVKIGVITYKIAAHAADLAKGHPGAQIRDDALSRARFEFRWEDQFNLSLDPETARSMHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKDGMAKMAEKFRKGGDLYVPLDKVKEI
SIO_010081: DSHI_RS20520
subclass of: SO_0000673
so part of: DSHI_RS20520
location: complement(13911..15719)
location: region:13911-15719:-1
so has part: feature:13911-15719:-1:exon

WP_012187122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13911-15719:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 398580
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00059
inference: COORDINATES: profile:INFERNAL:1.1.4
note: TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: thiamine pyrophosphate
so part of: sequence
location: complement(15821..15943)
location: region:15821-15943:-1
so has part: feature:15821-15943:-1:region

position:15821:-1
position: 15821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15943:-1
position: 15943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15821-15943:-1:region

DSHI_RS20525
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20525
old locus tag: Dshi_4081
so part of: sequence
location: complement(16240..16839)
location: region:16240-16839:-1
so has part: feature:16240-16839:-1:exon
subclass of: SO_0000010

position:16240:-1
position: 16240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16839:-1
position: 16839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16240-16839:-1:exon

DSHI_RS20525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20525
old locus tag: Dshi_4081
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013635075.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTKTRVGYARCSTDKQDLAAQRTALLALDVAEDRIYTDHGLTGTNRERPGLAQALAAVREGDTLVVPKLDRLARSVPDARAIADELEKRGVKLALGASVHDPTDPMGKMFFNILATFAEFEADLIRMRTKEGMAIARAKGRLKGKKPKLSDRRQAELRRMYDTGDYSISDLAELFDVSRPTVYRVLQRTPSADASSAAV
SIO_010081: DSHI_RS20525
subclass of: SO_0000673
so part of: DSHI_RS20525
location: complement(16240..16839)
location: region:16240-16839:-1
so has part: feature:16240-16839:-1:exon

WP_012187123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16240-16839:-1:exon

DSHI_RS20530
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20530
old locus tag: Dshi_4082
so part of: sequence
location: 17020..18471
location: region:17020-18471:1
so has part: feature:17020-18471:1:exon
subclass of: SO_0000010

position:17020:1
position: 17020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18471:1
position: 18471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17020-18471:1:exon

DSHI_RS20530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20530
old locus tag: Dshi_4082
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003939267.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mu transposase C-terminal domain-containing protein
translation: MTALPEDRRAEALRRFNILRQHLIDEVPLTEVARVSGIPLRTLQRWTSRYQRFGLAGLARAPRSDAGQRRLSSELVELIEGLALHKPRLSTAAIHRRIIPIVKSRDWPVPSYATIHSIVNSLDPALVTLAHDGAAAYRDRFEMIHRHRAERPNAVWQTDHTQLDLIILDTNGAPVRPWLTIVLDDHSRAVAGYAVFVGAPSAIQTALALRQAIWRKDTPSWPICGLPDVLYTDHGSDFTSKHLEQVAADLRIELVFSTVGRPQGRGKIERFFGTINTELLPELPGALSNGKPASPPRLSLGELEVAVKTFVTAVYNARKHSEIDVPPNEAWRGDGWLPRMPNSLEQLDLLLVMALKTRQVRRDGIRFQGLLYTDPTLAAYVGKTVNIRYDPRDITELRVFHRDRFLCRAVSAHHAHHTISLKDIQQARTARRKALRNEITVKSRQITEFLPKPAPPPSREKQNPVSPDAPRQKLVLYKTDKTP
SIO_010081: DSHI_RS20530
subclass of: SO_0000673
so part of: DSHI_RS20530
location: 17020..18471
location: region:17020-18471:1
so has part: feature:17020-18471:1:exon

WP_229941942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17020-18471:1:exon

DSHI_RS20535
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20535
old locus tag: Dshi_4083
so part of: sequence
location: 18468..19292
location: region:18468-19292:1
so has part: feature:18468-19292:1:exon
subclass of: SO_0000010

position:18468:1
position: 18468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19292:1
position: 19292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18468-19292:1:exon

DSHI_RS20535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20535
old locus tag: Dshi_4083
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007406871.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSRQTRRTGTFLVTREHKRFVEFANAVRRNATIGLCHGRAGVGKTLSARRYANWDLIEPLITTWGRREDSDKKVYAASSRARTLFYTPPVGGSISALRKDIQPFIMRLCVCIDSYGNPKWAERPLTPLGLIELVIIDEAERLTMTGLEFLRDQFDRSDAGLILIGMPGIEKRMSQYPQLYSRIGFVHEYPPLSKDEMQFVLQRQWRKWGFGQDDADFTDDRVAAAIIRLTAGNFRLLQRLFMQIERIARINEMAAITEDVVEAAAQTLVIGNAN
SIO_010081: DSHI_RS20535
subclass of: SO_0000673
so part of: DSHI_RS20535
location: 18468..19292
location: region:18468-19292:1
so has part: feature:18468-19292:1:exon

WP_012187125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18468-19292:1:exon

DSHI_RS20540
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20540
old locus tag: Dshi_4084
so part of: sequence
location: 19415..19981
location: region:19415-19981:1
so has part: feature:19415-19981:1:exon
subclass of: SO_0000010

position:19415:1
position: 19415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19981:1
position: 19981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19415-19981:1:exon

DSHI_RS20540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20540
old locus tag: Dshi_4084
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009469706.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MNLGYARVSTDDQATAAQLDALRAVGCERVFEERASGGRWDRPELHRMLDQLRDGDVVIVWKLDRLSRSLKDLLSIMEKIDAAGAGFRSLTEAIDTTTPAGRMMMQMVGVFAEFEREMIRERTRAGLERARKKGRHPGRKPKLSDDQRQEIRDMVRSGKRTEAQAARLFGVHRSTISRVMREASDAAA
SIO_010081: DSHI_RS20540
subclass of: SO_0000673
so part of: DSHI_RS20540
location: 19415..19981
location: region:19415-19981:1
so has part: feature:19415-19981:1:exon

WP_012187377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19415-19981:1:exon

DSHI_RS20545
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20545
old locus tag: Dshi_4085
so part of: sequence
location: 19968..20222
location: region:19968-20222:1
so has part: feature:19968-20222:1:exon
subclass of: SO_0000010

position:19968:1
position: 19968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20222:1
position: 20222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19968-20222:1:exon

DSHI_RS20545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20545
old locus tag: Dshi_4085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503743.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MQQLELFPEDIRIERVDPEANMYRFYRLRLMPDLFGGVSLLREWGRIGTQGRHRIELFEDAGRAADAMVSLYRAKQKRGYQLVG
SIO_010081: DSHI_RS20545
subclass of: SO_0000673
so part of: DSHI_RS20545
location: 19968..20222
location: region:19968-20222:1
so has part: feature:19968-20222:1:exon

WP_012187378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19968-20222:1:exon

DSHI_RS20550
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20550
old locus tag: Dshi_4086
so part of: sequence
location: 20321..20572
location: region:20321-20572:1
so has part: feature:20321-20572:1:exon
subclass of: SO_0000010

position:20321:1
position: 20321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20572:1
position: 20572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20321-20572:1:exon

DSHI_RS20550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20550
old locus tag: Dshi_4086
inference: COORDINATES: protein motif:HMM:NF015640.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MPRQTITISEPNHAWLQARVDSGEFKTQTEAVNDALRRAREIENGVEEIRARLIRAEQRGFTDMTPDQILEQSKKELRKNGDL
SIO_010081: DSHI_RS20550
subclass of: SO_0000673
so part of: DSHI_RS20550
location: 20321..20572
location: region:20321-20572:1
so has part: feature:20321-20572:1:exon

WP_044029527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20321-20572:1:exon

DSHI_RS20555
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20555
old locus tag: Dshi_4087
so part of: sequence
location: 20559..20852
location: region:20559-20852:1
so has part: feature:20559-20852:1:exon
subclass of: SO_0000010

position:20559:1
position: 20559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20852:1
position: 20852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20559-20852:1:exon

DSHI_RS20555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20555
old locus tag: Dshi_4087
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013455559.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MGTYRLSEEAKDDLIGIHQYGVRKHGEAQADAYFWQIIERLEVLGETPLLYQEVPEIREGYRRSVCGKHSIYYTLDGDDVEIMAILRSQDPTLRFGR
SIO_010081: DSHI_RS20555
subclass of: SO_0000673
so part of: DSHI_RS20555
location: 20559..20852
location: region:20559-20852:1
so has part: feature:20559-20852:1:exon

WP_012187380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20559-20852:1:exon

DSHI_RS20560
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20560
old locus tag: Dshi_4088
so part of: sequence
location: 20858..21250
location: region:20858-21250:1
so has part: feature:20858-21250:1:exon
subclass of: SO_0000010

position:20858:1
position: 20858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21250:1
position: 21250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20858-21250:1:exon

DSHI_RS20560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20560
old locus tag: Dshi_4088
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFDPTNHGFLKLDFTFPSNVAVYERELEGIDQSAHDQMRLNCYLSQDGDFVTVWDGLIDAYVTGISLGFGDDASFDFAEQYEETLFRGYISNDDEGAVILSALRLEQRIPNILVVPTKGRLECHMLKVG
SIO_010081: DSHI_RS20560
subclass of: SO_0000673
so part of: DSHI_RS20560
location: 20858..21250
location: region:20858-21250:1
so has part: feature:20858-21250:1:exon

WP_012187381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20858-21250:1:exon

DSHI_RS20565
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20565
old locus tag: Dshi_4089
so part of: sequence
location: complement(21412..22511)
location: region:21412-22511:-1
so has part: feature:21412-22511:-1:exon
subclass of: SO_0000010

position:21412:-1
position: 21412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22511:-1
position: 22511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21412-22511:-1:exon

DSHI_RS20565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20565
old locus tag: Dshi_4089
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611844.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MKRSRFTEEQIIGMLKEQEAGMTTADVCRKHGVSTATFYKYKARFGGLEVSDARRLRALEDENAKLKKLLAEAMLDNAILKDVTSRKVVAPGVRREAVAHVVEVHGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVMLERQGIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRQFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSVAVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHDYNHHRPHSGLGNIPPVEFVAKKGLEMRAA
SIO_010081: DSHI_RS20565
subclass of: SO_0000673
so part of: DSHI_RS20565
location: complement(join(21412..22253,22253..22511))
location: region:21412-22511:-1
so has part: feature:22253-22511:-1:exon
so has part: feature:21412-22253:-1:exon

WP_245533035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22253-22511:-1:exon

position:22253:-1
position: 22253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:21412-22253:-1:exon

DSHI_RS22055
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22055
old locus tag: Dshi_4091
so part of: sequence
location: complement(22571..23002)
location: region:22571-23002:-1
so has part: feature:22571-23002:-1:exon
subclass of: SO_0000010

position:22571:-1
position: 22571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23002:-1
position: 23002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22571-23002:-1:exon

DSHI_RS22055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22055
old locus tag: Dshi_4091
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHYNLDLQFNSQSLVACMTEHPSIGGRAWPTVILADDLHEFAFALWSNSTPGFLCRWWMSNKTQAGRGASTVTSVPGFSTLYVRRLSTNQHQAAREAFDALAQERFLPFDQINEDTARAELDRRLLVDVLGLSPDLCVAGGPM
SIO_010081: DSHI_RS22055
subclass of: SO_0000673
so part of: DSHI_RS22055
location: complement(22571..23002)
location: region:22571-23002:-1
so has part: feature:22571-23002:-1:exon

WP_157865457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22571-23002:-1:exon

DSHI_RS20575
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20575
so part of: sequence
location: 23338..23529
location: region:23338-23529:1
so has part: feature:23338-23529:1:exon
subclass of: SO_0000010

position:23338:1
position: 23338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23529:1
position: 23529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23338-23529:1:exon

DSHI_RS20575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFCAVAFSCTMTGERWVHYDQIELIVAYLLHKAAHFIRPSPTGRLGCSLNNLEIGLRFQQIE
SIO_010081: DSHI_RS20575
subclass of: SO_0000673
so part of: DSHI_RS20575
location: 23338..23529
location: region:23338-23529:1
so has part: feature:23338-23529:1:exon

WP_044029529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23338-23529:1:exon

DSHI_RS22060
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22060
pseudo: true
so part of: sequence
location: <23600..23791
location: region:23600-23791:1
so has part: feature:23600-23791:1:exon
subclass of: SO_0000010

position:23600:1
position: 23600
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:23791:1
position: 23791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23600-23791:1:exon

DSHI_RS22060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012177568.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5/IS1182 family transposase
SIO_010081: DSHI_RS22060
subclass of: SO_0000673
so part of: DSHI_RS22060
location: <23600..23791
location: region:23600-23791:1
so has part: feature:23600-23791:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23600-23791:1:exon

DSHI_RS20580
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20580
old locus tag: Dshi_4092
so part of: sequence
location: complement(24188..25219)
location: region:24188-25219:-1
so has part: feature:24188-25219:-1:exon
subclass of: SO_0000010

position:24188:-1
position: 24188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25219:-1
position: 25219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24188-25219:-1:exon

DSHI_RS20580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20580
old locus tag: Dshi_4092
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011983025.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MRLFVGLDVSLEKTAICVISEHGKIVREAQVISEPEALARWIEEQSGSIAAVGLEAGPLSQWLHRGLSAAGLDVVLMETRRVKSALKAMPIKTDRRDAEGIARLLHLGWFRPVHCKSVSAQEVRALLAARKAVQQGMIALEMSLRGLLRNFGLKVGAISRGRFEHRIRELATGNAMLEAATEPMLRARAALRQELAGLERHVRGLAQEDEVCQRLMSMPGIGAVVALTFRSAVDDPSRFSSSKKVGPWAGLTPSRNQSGERDVSGGITKAGDANLRRALCQAATVMMNRGPSTWLRTWAERVARRRGRKCAMVALARRIAVVLHRMWRDETAFQAGAPISHAA
SIO_010081: DSHI_RS20580
subclass of: SO_0000673
so part of: DSHI_RS20580
location: complement(24188..25219)
location: region:24188-25219:-1
so has part: feature:24188-25219:-1:exon

WP_012187383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24188-25219:-1:exon

DSHI_RS22065
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22065
so part of: sequence
location: complement(25327..26084)
location: region:25327-26084:-1
so has part: feature:25327-26084:-1:exon
subclass of: SO_0000010

position:25327:-1
position: 25327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26084:-1
position: 26084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25327-26084:-1:exon

DSHI_RS22065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MSDLFWLTDAQMARLEPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPAAYGPHKTLYNRWKRWSDRGVFARMMAGLAAEHGERKTVMIDATYLKAHRTATSMGGEKGGRGRLIGRTKGGMNTKLHAICDSQGRPLNLFVTAGQVSDYIGARALVSSLPKVEWLLGDRGYDADWFREALKDKGIRACIPGRKQRKKPMKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAIALAATVIYWL
SIO_010081: DSHI_RS22065
subclass of: SO_0000673
so part of: DSHI_RS22065
location: complement(join(25327..25763,25763..26084))
location: region:25327-26084:-1
so has part: feature:25763-26084:-1:exon
so has part: feature:25327-25763:-1:exon

WP_085930431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25763-26084:-1:exon

position:25763:-1
position: 25763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:25327-25763:-1:exon

DSHI_RS22070
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22070
pseudo: true
so part of: sequence
location: 26776..27536
location: region:26776-27536:1
so has part: feature:26776-27536:1:exon
subclass of: SO_0000010

position:26776:1
position: 26776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27536:1
position: 27536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26776-27536:1:exon

DSHI_RS22070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611612.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: DSHI_RS22070
subclass of: SO_0000673
so part of: DSHI_RS22070
location: 26776..27536
location: region:26776-27536:1
so has part: feature:26776-27536:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26776-27536:1:exon

DSHI_RS20600
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20600
pseudo: true
so part of: sequence
location: complement(28140..30307)
location: region:28140-30307:-1
so has part: feature:28140-30307:-1:exon
subclass of: SO_0000010

position:28140:-1
position: 28140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30307:-1
position: 30307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28140-30307:-1:exon

DSHI_RS20600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009574206.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParB N-terminal domain-containing protein
SIO_010081: DSHI_RS20600
subclass of: SO_0000673
so part of: DSHI_RS20600
location: complement(28140..30307)
location: region:28140-30307:-1
so has part: feature:28140-30307:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28140-30307:-1:exon

DSHI_RS20605
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: repC
locus tag: DSHI_RS20605
old locus tag: Dshi_4102
so part of: sequence
location: complement(30488..31699)
location: region:30488-31699:-1
so has part: feature:30488-31699:-1:exon
subclass of: SO_0000010

position:30488:-1
position: 30488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31699:-1
position: 31699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30488-31699:-1:exon

DSHI_RS20605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: repC
locus tag: DSHI_RS20605
old locus tag: Dshi_4102
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012187387.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication protein RepC
translation: MEYTPISPFMRPISQAHLRVIERPEASVPGRPVNKWELLRELSKAQAAFGVSERDLTVLQGLLSFFPDDALGGNAEMVVFPSNKAICERLNGMPCSTMRRHLARLVDAGLLQRRDSPNGKRYVRKHGGERVAFGFDLSPLYCQSEEIARAAETVREAEERVRRLREVVSLMRRDLAALAEFGDEMQPGLGFWDQLRDKAALTARALRRKLSIEDLAAYRADLEGLLDQARNIIDGPETEEMNTNDAQFERHHHNSNKESIDLEPALEKSRAVAGMPDVDTDEPVAGVDEQDTKNLPKIPLHLVIAACPSLKTFYQGEIRHWHQLFDAACHVRPAMGISSSAWEEAQRFMGPEQASIVVAAMLERFEDIRSPGGYLRALTAKAAAGEFSCGPMVMALIGRRSAA
SIO_010081: DSHI_RS20605
subclass of: SO_0000673
so part of: DSHI_RS20605
location: complement(30488..31699)
location: region:30488-31699:-1
so has part: feature:30488-31699:-1:exon

WP_012187387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30488-31699:-1:exon

DSHI_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: repB
locus tag: DSHI_RS22075
old locus tag: Dshi_4103
so part of: sequence
location: complement(31914..32843)
location: region:31914-32843:-1
so has part: feature:31914-32843:-1:exon
subclass of: SO_0000010

position:31914:-1
position: 31914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32843:-1
position: 32843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31914-32843:-1:exon

DSHI_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: repB
locus tag: DSHI_RS22075
old locus tag: Dshi_4103
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009820070.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning protein RepB
translation: MARKPKLGLPLQTLRNAPDALEGRRLRGGVFEIDPVQIVTEGRLDDRLQIEVEGLKNSISKNGQRVPVLVRPLEGDRYNLIYGRRRLEACRELGIKVRAIVTEVEGDQALRDQLLENQERRDLSFIERALVATALLDGDHLEGAERTNRGVAEVLNLHEAGVSQLLSVVRTVGEELIQAIGAAPGIGRPRWEELKKALGAYDGDRDQLQAAAHAAKSESSGSVDEVSDRAFLAVLEAAKSAERKAGSPRKGAPALEIPGVGAATVKTGRQGKQLKLDLTTDEPEFVSWLEGNASKLITELHERWKRSGD
SIO_010081: DSHI_RS22075
subclass of: SO_0000673
so part of: DSHI_RS22075
location: complement(31914..32843)
location: region:31914-32843:-1
so has part: feature:31914-32843:-1:exon

WP_083768441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31914-32843:-1:exon

DSHI_RS20615
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: repA
locus tag: DSHI_RS20615
old locus tag: Dshi_4104
so part of: sequence
location: complement(32827..34020)
location: region:32827-34020:-1
so has part: feature:32827-34020:-1:exon
subclass of: SO_0000010

position:32827:-1
position: 32827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34020:-1
position: 34020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32827-34020:-1:exon

DSHI_RS20615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: repA
locus tag: DSHI_RS20615
old locus tag: Dshi_4104
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009827042.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning protein RepA
translation: MSELEQDLDIAIGHYAELLASNLHAQRAAHFPPDAKKVMRTLTSGEAAELLGVDHTYLRKLHREGKIVDVETTAGSHRRYTLDDIWEIRQTLEGTAKKSGTYVPGRRDGDELQVISVVNFKGGSGKTTTSAHLAQRLALKGYRVLAIDLDPQASLSALHGIQPELDLMEGGTLYDAVRYDDPVPIAEVIRKTYIRGLDLIPGNLELMEFEHETPAAIQRGGAKAFFARVHDALDSVEANYDVVVIDCPPQLGFLTMSALSASSGVLVTVHPQMLDLMSMSQFLRMTADLLGVIRDAGANLRFDWLRFLPTRYKVGDAPQTEVIAFIRGLFGRSILTNHMVESTAISDAGLTKQTLYEADKKDFTRQTFDRAIESMNAVNDEIAEIIQNTWGRNGKKA
SIO_010081: DSHI_RS20615
subclass of: SO_0000673
so part of: DSHI_RS20615
location: complement(32827..34020)
location: region:32827-34020:-1
so has part: feature:32827-34020:-1:exon

WP_012187389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32827-34020:-1:exon

DSHI_RS20620
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20620
old locus tag: Dshi_4105
so part of: sequence
location: complement(34155..35036)
location: region:34155-35036:-1
so has part: feature:34155-35036:-1:exon
subclass of: SO_0000010

position:34155:-1
position: 34155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35036:-1
position: 35036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34155-35036:-1:exon

DSHI_RS20620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20620
old locus tag: Dshi_4105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010138187.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSLIGYARVSTEDQTPLPQSEALQSAGCSEIFEEHASGGNRARPVLARVLERISKGDTLVVVRIDRLARSLSHLLEVIERLEAKGAFFRSLQDPIDTASPQGKFTLQVLGAAAEFERALIRERTKAGLASARAKGRVGGNPGLRTKDPAALRKVRLARQDGYMERLNETAQDWVPHVRRLRPDMAWEDVLRIINGPLPHGRHWTQSRLLRAVKAYVRDGFLPAEVLGRAGRRETDDRLPAIVAAIKGADPEITLQAICDRLESMRERTPRGRTSWQPSSVRMLLERAENLGLL
SIO_010081: DSHI_RS20620
subclass of: SO_0000673
so part of: DSHI_RS20620
location: complement(34155..35036)
location: region:34155-35036:-1
so has part: feature:34155-35036:-1:exon

WP_012187390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34155-35036:-1:exon

DSHI_RS20625
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20625
old locus tag: Dshi_4106
so part of: sequence
location: 35263..36330
location: region:35263-36330:1
so has part: feature:35263-36330:1:exon
subclass of: SO_0000010

position:35263:1
position: 35263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36330:1
position: 36330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35263-36330:1:exon

DSHI_RS20625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20625
old locus tag: Dshi_4106
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012187243.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNMQASTLTDDFDDPLNTIEEDEEAHEDDLWFLPGPLEEEPDDLPPGPRAEPPDTAVIENWAKAEGIHAARLARVAGRLGALDDRLLRGPEGWRHRLALIEAAELSWFAGDRVSSDRLALWISMRLSGAQDDPNALARVGWAVRRLTGGPGPESDLAAFLNRRDPKNIEDNAERFKDRAGGWLDVMAAAGELHPITRACMGFHLWSLAGLGGQGDQIEAAVTASRIAARDGSGAVFAPLAMGGAGGLRVSGLPPERLARWLDGMNSAILTVMRTLDDIEAWTGRAENVMAQLSGRTPLALRRTFSQWPLVSAPMAETVTGASRAAVQRNLAWMEARGLIREVTGQGRYRMWSLDI
SIO_010081: DSHI_RS20625
subclass of: SO_0000673
so part of: DSHI_RS20625
location: 35263..36330
location: region:35263-36330:1
so has part: feature:35263-36330:1:exon

WP_012187391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35263-36330:1:exon

DSHI_RS22925
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22925
pseudo: true
so part of: sequence
location: complement(<36774..37104)
location: region:36774-37104:-1
so has part: feature:36774-37104:-1:exon
subclass of: SO_0000010

position:36774:-1
position: 36774
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:37104:-1
position: 37104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36774-37104:-1:exon

DSHI_RS22925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: DSHI_RS22925
subclass of: SO_0000673
so part of: DSHI_RS22925
location: complement(<36774..37104)
location: region:36774-37104:-1
so has part: feature:36774-37104:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36774-37104:-1:exon

DSHI_RS20630
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20630
old locus tag: Dshi_4108
so part of: sequence
location: 37700..37960
location: region:37700-37960:1
so has part: feature:37700-37960:1:exon
subclass of: SO_0000010

position:37700:1
position: 37700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37960:1
position: 37960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37700-37960:1:exon

DSHI_RS20630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20630
old locus tag: Dshi_4108
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRACYEDPALSNAFRRTVCNADGAFIFDSLAPGQWFVLTRIRTTPGSTITRDGEIFLRQFIRVPADRIATPVLTNLDIHFVYSDLL
SIO_010081: DSHI_RS20630
subclass of: SO_0000673
so part of: DSHI_RS20630
location: 37700..37960
location: region:37700-37960:1
so has part: feature:37700-37960:1:exon

WP_012187393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37700-37960:1:exon

DSHI_RS22090
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22090
old locus tag: Dshi_4109
so part of: sequence
location: 39318..39818
location: region:39318-39818:1
so has part: feature:39318-39818:1:exon
subclass of: SO_0000010

position:39318:1
position: 39318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39818:1
position: 39818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39318-39818:1:exon

DSHI_RS22090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22090
old locus tag: Dshi_4109
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQSTRSGGMAPLCLRPLPKNARWIPNTKLALHPLATPAFETYRNIRVSARISPSLADPLLVVRSDQGRALFFGNFAARMVFADHETMPVIVFDGLEGADITRFAWAEITKLAFNQLHPRGGFQDLKRALLLSPEDVTKTAIGQIGDAALARHLAVDVSRFRGAQR
SIO_010081: DSHI_RS22090
subclass of: SO_0000673
so part of: DSHI_RS22090
location: 39318..39818
location: region:39318-39818:1
so has part: feature:39318-39818:1:exon

WP_012187394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39318-39818:1:exon

DSHI_RS20640
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20640
old locus tag: Dshi_4110
so part of: sequence
location: 39815..41992
location: region:39815-41992:1
so has part: feature:39815-41992:1:exon
subclass of: SO_0000010

position:39815:1
position: 39815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41992:1
position: 41992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39815-41992:1:exon

DSHI_RS20640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20640
old locus tag: Dshi_4110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDPLEKLLPPCPVARKQFAAEGRRLLNLLPDYAAKSKVEACFTRLFAGHEVENVSLENARQAIHRKLKTYPLGDLLGHRPSEAQSKAPSIDMLRAWVFAGALHAIDDEDQCHTAWAFAVRAVRKLAMDQAWGGERARLPSVLDLSLWQVRQTLNAWEGRERTVGNAHAGQIEDIRRHLDHLAGSPRRHVGDVTRKAAKRSQRLAAELTAPCALSADVPVQPVLDLVQHDHDDAPLVTLEEAADVAEVTWLKSTHENLDDVIEDLLETEAPVSAMTASRHLTHEEARALARDLRKAIAHGAEPGVVMLAMSLCLGSSFEMLVRLSKSVPKVAGTPWWHVSGEKMGLAFAPAVTGAPKPASGGFVIMLPTWLATAAHKILEGDLDLDAFEGQAKQWLKRRPGRAQRLSRVAQCLPAALKSVGIDAALAGLLTRQDIRTCPQIYYTLVTAPQLDRVYAEFQTNWLGDTERETAVCALTRSNNRIGSRRVPSREAVATFFSELDHQLADAEECLTTRRPYAVHQLHSALVNKVAGIVAFTTAMRPHGEACSSFRQMILEGPCPTMRLEDKGNRQVDDARWLPIPRLLAETFCALRDHLENLHPWASITSPDLAAHIDASLKGQCAPLWYIPECTDKPEALKSSDFWKVHKQRRQERNMFRHYWRTRLVASHTPGWMIDYWMGHGGWQAAQYLPLGAYQARDLKSLADTIDEHAADLGLHAPEVRRLPQ
SIO_010081: DSHI_RS20640
subclass of: SO_0000673
so part of: DSHI_RS20640
location: 39815..41992
location: region:39815-41992:1
so has part: feature:39815-41992:1:exon

WP_012187395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39815-41992:1:exon

DSHI_RS20645
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20645
old locus tag: Dshi_4111
so part of: sequence
location: 42019..44979
location: region:42019-44979:1
so has part: feature:42019-44979:1:exon
subclass of: SO_0000010

position:42019:1
position: 42019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44979:1
position: 44979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42019-44979:1:exon

DSHI_RS20645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20645
old locus tag: Dshi_4111
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MAVEIVDELLRGDAVPEDWTVAIETAVADRRPDLGPKDRNRIVARVIERVNDRRGLSLKKSHLHRPPAAIPPLRDAEWPPQAMEIIHLRHRLDEMLTAAGRSTLGADLPRLILACAALRGGLCRLEGLHALARAVGSGELTLTGADAFPNLVWIDLDLQIAKGTQQHTNTNPGSEYLRWFPDVTTLALIDRWRRLGPLTYHVPSSPAALYTDMLDLLGAPELKKQVPATRFPLVALAALEHVSGVALPVSVEAVASGHSVGLSVLPETWDALCTRGQPLKEPPDTRGAARTAQPQPSRTPKSAAPRPAPADHAKAQLLEALKECLDTHAATSSVKGRKAMSDALQTLQQEAVGIWHSLEALVSWYRTLLRNGDKPRTVKDYHSIVGRHVLAVMTEDDPRNLTPEALRDMFEQVLARSSYANPAHPLGRLAHFARHAERVLDWPDADFSGFGDQGKASATFVRTAALPMAIYPEVFDAILQTTDLSPDMAECYAVAFALVAWGGLRIDEAHGRVVDDIGTDLTVFVHATSSHGLKSEAARRLIPLALFAPPEVVAQVKSFVARRATVPDKTRDKLLDLGTLFPGDRFDTGTFRTLLQRTLGQMLGIAVRPHDFRHTLISALQLLFHLGADAVDTIEAVSGWNAKRQKRIRHALLGVCPDPRRAPRQISALAGHRDLSAISGTTYCHLTDLALGCLIQSAEERLPASVAARWLGLNRRSLRPFIDDNDTVRLEDLRGPLVNKMDIAWRTTRTGQLPSPEPRVAKPVRVTPTVVHAVLKMAEHDTDTLTIADQLNIMRDQVTHMLATAEDLMAATTQKKGARHVGAHDQDRPNWPVARFADQPGEVRFLARLLADAETLPPENMLKWSMVVLTHADRHRPCLRFLGAPAAQNWLELFPKAFPKSSLDILIRFPSDVTPEAAEKAWCTAIGAKGNYQTESSGHGTSVCPTAPGLIMLRKVSKKAKESRSFSTLRRAAFCIAVTCRVTDEA
SIO_010081: DSHI_RS20645
subclass of: SO_0000673
so part of: DSHI_RS20645
location: 42019..44979
location: region:42019-44979:1
so has part: feature:42019-44979:1:exon

WP_157865458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42019-44979:1:exon

DSHI_RS20650
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20650
old locus tag: Dshi_4112
so part of: sequence
location: 45616..45843
location: region:45616-45843:1
so has part: feature:45616-45843:1:exon
subclass of: SO_0000010

position:45616:1
position: 45616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45843:1
position: 45843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45616-45843:1:exon

DSHI_RS20650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20650
old locus tag: Dshi_4112
inference: COORDINATES: protein motif:HMM:NF014643.2
GO component: GO:0110001 - toxin-antitoxin complex [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system Phd/YefM family antitoxin
translation: MPRITATEFQQNVGAYSDAAQREPVIITHHNRDRLVLMSAEAYARLQAFEAAEETALIEARMAAQRVTVEKLARR
SIO_010081: DSHI_RS20650
subclass of: SO_0000673
so part of: DSHI_RS20650
location: 45616..45843
location: region:45616-45843:1
so has part: feature:45616-45843:1:exon

WP_012187397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45616-45843:1:exon

DSHI_RS20655
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20655
old locus tag: Dshi_4113
so part of: sequence
location: 45840..46232
location: region:45840-46232:1
so has part: feature:45840-46232:1:exon
subclass of: SO_0000010

position:45840:1
position: 45840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46232:1
position: 46232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45840-46232:1:exon

DSHI_RS20655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20655
old locus tag: Dshi_4113
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005848694.1
GO function: GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system death-on-curing family toxin
translation: MTEPFWVSQAGVLRIHDLGLEIGGGAAGLRDAGLLASALARPVNLWAYGETDLFVLAAAYAEGIAGNHPFVDGNKRTGFMTADVFLARHGWLLSPVTDETHADMMVALARGQIDRGQAAAHFRDHAAPVP
SIO_010081: DSHI_RS20655
subclass of: SO_0000673
so part of: DSHI_RS20655
location: 45840..46232
location: region:45840-46232:1
so has part: feature:45840-46232:1:exon

WP_012187398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45840-46232:1:exon

DSHI_RS20660
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: rfbC
locus tag: DSHI_RS20660
old locus tag: Dshi_4114
so part of: sequence
location: 46419..46973
location: region:46419-46973:1
so has part: feature:46419-46973:1:exon
subclass of: SO_0000010

position:46419:1
position: 46419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46973:1
position: 46973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46419-46973:1:exon

DSHI_RS20660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: rfbC
locus tag: DSHI_RS20660
old locus tag: Dshi_4114
EC number: 5.1.3.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020041597.1
GO function: GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase
translation: MQIEDTPLPGVKLLTPARFGDARGFFSESYSRRVLAGHGITLDFVQDNHSLSAQVGTVRGLHFQAPPHAQDKLVRCGRGRLFDVAVDVRRGSPTYGQWFGAELSFENGKQLLVPAGFLHGFVTREPDTEIVYKCSDYYAPECDGAVHWDSCGIDWGFEGDPVISAKDAAAVRLADFDSPFVYEG
SIO_010081: DSHI_RS20660
subclass of: SO_0000673
so part of: DSHI_RS20660
location: 46419..46973
location: region:46419-46973:1
so has part: feature:46419-46973:1:exon

WP_012187399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46419-46973:1:exon

DSHI_RS20665
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: rfbB
locus tag: DSHI_RS20665
old locus tag: Dshi_4115
so part of: sequence
location: 46978..48018
location: region:46978-48018:1
so has part: feature:46978-48018:1:exon
subclass of: SO_0000010

position:46978:1
position: 46978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48018:1
position: 48018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46978-48018:1:exon

DSHI_RS20665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: rfbB
locus tag: DSHI_RS20665
old locus tag: Dshi_4115
EC number: 4.2.1.46
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014876615.1
GO function: GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-glucose 4,6-dehydratase
translation: MKLLVTGGAGFIGSAVVRQAIRDGHQVVNLDALTYAACLDNVASVADSPAYAFEHVDIRDRAALDRVFATHAPDAVMHLAAESHVDRSIDGPGDFIETNITGTYNMLEAARSHWVGQGRPEDFRFHHISTDEVFGSLGPTGQFTEETPYDPRSPYSASKAASDHLVRAWHETYGLPVVMTNCSNNYGPFHFPEKLVPVIILKALAGEPLPIYGDGSNVRDWLYVEDHADALLLVVQKGVVGRSYNIGGENERTNLQLVQTLCGILDELRPGPRPYAEQISFVTDRPGHDARYAIDPTRIATELGWRPSVTVEEGLRRTVQWYLDNEAWWRALQDRDGVGRRLGKAG
SIO_010081: DSHI_RS20665
subclass of: SO_0000673
so part of: DSHI_RS20665
location: 46978..48018
location: region:46978-48018:1
so has part: feature:46978-48018:1:exon

WP_012187400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46978-48018:1:exon

DSHI_RS21565
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS21565
old locus tag: Dshi_4116
so part of: sequence
location: 48022..48855
location: region:48022-48855:1
so has part: feature:48022-48855:1:exon
subclass of: SO_0000010

position:48022:1
position: 48022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48855:1
position: 48855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48022-48855:1:exon

DSHI_RS21565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS21565
old locus tag: Dshi_4116
inference: COORDINATES: protein motif:HMM:NF015527.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0008146 - sulfotransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfotransferase family 2 domain-containing protein
translation: MPDAPHHPRLLRHTPGTREPLGKNAAHRFASQHALVHYGSGTVFTFIPKNACTSLRISLALANGAIATVEEWNWVHKNNATFAATLPELARAPETALVLRCPFRRLASTFLDKIVSRQPDFWALYDRSAREIDPDRLTFRGFVDWIGRPGMLRANIHWRPQEDFLVYARYDHVFGMTGLDAFAAFFAQRTGHDHVDSRKFSGHTSAGFVPLEGGCQADTPLVELMVAKARGALPRAVDLFDDALAGQVARLYGRDLALLRDLARDAPLLFPEYGEEP
SIO_010081: DSHI_RS21565
subclass of: SO_0000673
so part of: DSHI_RS21565
location: 48022..48855
location: region:48022-48855:1
so has part: feature:48022-48855:1:exon

WP_012187401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48022-48855:1:exon

DSHI_RS20675
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: rfbD
locus tag: DSHI_RS20675
old locus tag: Dshi_4117
so part of: sequence
location: 48852..49709
location: region:48852-49709:1
so has part: feature:48852-49709:1:exon
subclass of: SO_0000010

position:48852:1
position: 48852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49709:1
position: 49709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48852-49709:1:exon

DSHI_RS20675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: rfbD
locus tag: DSHI_RS20675
old locus tag: Dshi_4117
EC number: 1.1.1.133
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014889398.1
GO function: GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose reductase
translation: MILVFGQTGQVARELAARVPEALFLGRDAADLSDPDACAAALRAAAPSAVINAAAYTAVDRAEAEEDLATRINGAAPGAMAVAAAELGVPFVHISTDYVFDGAGTAPFAPDAPVGPLGAYGRSKLAGEEAVRAVGGVHAILRTSWVVSAHGGNFVKTMLRLGAERDSLSIVADQVGGPTAAGDIAAACLKIAARLAADPGKSGTYHFAGAPDVSWADFAREIFGQAGLDCAVTDIPSAAYPTPARRPHNSRLDCSSLQAAFGIARPDWAESLSGILRDLGHTPRP
SIO_010081: DSHI_RS20675
subclass of: SO_0000673
so part of: DSHI_RS20675
location: 48852..49709
location: region:48852-49709:1
so has part: feature:48852-49709:1:exon

WP_012187402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48852-49709:1:exon

DSHI_RS20680
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: rfbA
locus tag: DSHI_RS20680
old locus tag: Dshi_4118
so part of: sequence
location: 49744..50616
location: region:49744-50616:1
so has part: feature:49744-50616:1:exon
subclass of: SO_0000010

position:49744:1
position: 49744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50616:1
position: 50616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49744-50616:1:exon

DSHI_RS20680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: rfbA
locus tag: DSHI_RS20680
old locus tag: Dshi_4118
EC number: 2.7.7.24
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007812014.1
GO function: GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-1-phosphate thymidylyltransferase RfbA
translation: MTQRKGIILAGGSGTRLYPITIGVSKQLLPIYDKPMIYYPISVLMLAGIREIAIITTPEDQAQFQRAIGDGSQWGVSFTFIVQPSPDGLAQAYILAEDFLNGAPSAMVLGDNIFFGHGLPDIMAEADAQTAGGTVFGYHVADPERYGVVAFDSAGSVKQIIEKPEVPPSNYAVTGLYFLDGSAPERARKVQPSARGELEITTLLEMYLADGLLSVKRMGRGYAWLDTGTHGSLLDAGNFVRTLERRQGLQTGSPDEIAYDKGWISAEALQARAEKFRKNNYGEYLGQLLK
SIO_010081: DSHI_RS20680
subclass of: SO_0000673
so part of: DSHI_RS20680
location: 49744..50616
location: region:49744-50616:1
so has part: feature:49744-50616:1:exon

WP_012187403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49744-50616:1:exon

DSHI_RS20685
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20685
old locus tag: Dshi_4119
so part of: sequence
location: 50748..51629
location: region:50748-51629:1
so has part: feature:50748-51629:1:exon
subclass of: SO_0000010

position:50748:1
position: 50748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51629:1
position: 51629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50748-51629:1:exon

DSHI_RS20685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20685
old locus tag: Dshi_4119
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011909577.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar nucleotide-binding protein
translation: MTVRVLVLGATGRLGGMLRRHWGAWPDLEPLWQARQGAVRGAGDWVVFDPRTDPLALAQACGRVDVVLDLAGPVPAPGRAIDSFAAIAPLARAVAHGARVAGGRPLLWASSAAVYGARALCAEDDPPSPLSEYGRAKAAGEAALAGLPGACVLRIGNVAGADALLSAATPGVPVSLHRFADGTTPRRSYLGPASLAAVLAGLVRQAAGPPLPGVLNLTGPGPGVEMAALLAAAGLRWRPVPAPEAALAEVVLDTARLAGLVALPPEAGTARGIVAEWRADTALKQALCKEISP
SIO_010081: DSHI_RS20685
subclass of: SO_0000673
so part of: DSHI_RS20685
location: 50748..51629
location: region:50748-51629:1
so has part: feature:50748-51629:1:exon

WP_012187404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50748-51629:1:exon

DSHI_RS20690
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20690
old locus tag: Dshi_4120
so part of: sequence
location: 51626..52234
location: region:51626-52234:1
so has part: feature:51626-52234:1:exon
subclass of: SO_0000010

position:51626:1
position: 51626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52234:1
position: 52234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51626-52234:1:exon

DSHI_RS20690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20690
old locus tag: Dshi_4120
EC number: 2.7.8.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007256743.1
GO function: GO:0016740 - transferase activity [Evidence IEA]
GO process: GO:0006486 - protein glycosylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar transferase
translation: MTPGKRALDLILALVLGIVLGPVIAGLALWLRLSQGAPVFHAAERMTTPERGFTLWKFRTMTVAAADSGVSGGDKAARITPAGRWLRRTRLDELPQLWNILRGDLSFVGPRPPLREYVERFPELYGRVLRSRPGVTGLATLTYHAHEERLLAACADPAETDAVYARACVPRKARLDLIYAAHRSVCFDLVLIARTAGRVLGR
SIO_010081: DSHI_RS20690
subclass of: SO_0000673
so part of: DSHI_RS20690
location: 51626..52234
location: region:51626-52234:1
so has part: feature:51626-52234:1:exon

WP_012187405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51626-52234:1:exon

DSHI_RS20695
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20695
old locus tag: Dshi_4121
so part of: sequence
location: 52379..54934
location: region:52379-54934:1
so has part: feature:52379-54934:1:exon
subclass of: SO_0000010

position:52379:1
position: 52379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54934:1
position: 54934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52379-54934:1:exon

DSHI_RS20695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20695
old locus tag: Dshi_4121
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF012745.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MLQRLKGVFHRYADRHLTLDLPGFSLGEPVEEGQPLGHVDLVAARGNRLRVVGWSTADRITLSWNGGQASCRPHIPREDVANALGLGRYVGFELDAPLEAFPYLLTLDHGGGRAELPLAGMSLEALRRARGRLRWRFLGKLMVMSPLLGRYVLRRDPVTRDRIKRALSLEAVPRAGPMETALFTFAEGEELAFPTDLPITVVMPVYNALDLTRAALARVAEHTDLPWHAIVIEDCSTDPEVRPWLRGWATAQNAAQPGRVSLLENETNLGFIDSVNRGFAAALERGHHVVLLNSDALVPPGWASRLLRPMVVHDNVASVTPMSNDAEIFSSPVICARSMLAPGEAEAVDAVARGFHPEATLSVAPTGVGFCMAMHIDWLRRFPTLDPVFGRGYGEEVDWCQKVRARGGRHLGLPGLYVEHRGGESFGSEEKQRLIHTNNQIVAKRYPSYDREVQGFIAADPLITPRVALAVGLVAARARAAEAALPIYLAHSLGGGAEDDLARRVAEDVDRIGGAVILRVGGPQRWQVEVVTPAGQVAGGTDEFGFVQALLAPVGARRLIYSCGVGDADPAELPALLLSLRKFAMRDPVEVLVHDYFPLSPSYCLLDSDHVFRGLPPLDTADPAHGIARPDQGLLDLAGWRAAWGPLMTAAREITVFSESSRDLVAEAYPAARAAIRVRPHRLLNEVPRIPVPGPDAAPVVGVLGNIGVQKGAQLVQDMARTLHGSGARPTDPGLVLIGNIDPAFGLPEGMAVHGTYRIADLAQIVGKYGITCWLIPSVWPETFSFTTHEALASGLPVYAFDLGAQGAAVAAAGNGRVIPFDPDADPARTVLERLRADLGIAAGHVAPVSA
SIO_010081: DSHI_RS20695
subclass of: SO_0000673
so part of: DSHI_RS20695
location: 52379..54934
location: region:52379-54934:1
so has part: feature:52379-54934:1:exon

WP_050757932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52379-54934:1:exon

DSHI_RS20700
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20700
old locus tag: Dshi_4122
so part of: sequence
location: 54931..55707
location: region:54931-55707:1
so has part: feature:54931-55707:1:exon
subclass of: SO_0000010

position:54931:1
position: 54931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55707:1
position: 55707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54931-55707:1:exon

DSHI_RS20700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20700
old locus tag: Dshi_4122
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012187429.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0008146 - sulfotransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfotransferase family 2 domain-containing protein
translation: MSVSATAPLVFLHIPKTAGQTIHEELARALGPETVSPVRRYNQVAAGAPQMPPGYSLYSGPLDWGETDTLPSGAFVFTVLRDPFERLASYYLYVLKMARARADEVLEQPQEPHLRGLRRILTMSAEEYFFGGDAAWQGFIRAHYDNFYTSYFATRRMLGWREVQALDEETALQAALSNVPRMSRIYSIRELGALEADMAARGLEISVTETFRRATDDAHQERRWPMLAARFESDAGIRRLEAFAVRDELLLSELGLRV
SIO_010081: DSHI_RS20700
subclass of: SO_0000673
so part of: DSHI_RS20700
location: 54931..55707
location: region:54931-55707:1
so has part: feature:54931-55707:1:exon

WP_012187407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54931-55707:1:exon

DSHI_RS22095
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22095
pseudo: true
so part of: sequence
location: complement(55855..56694)
location: region:55855-56694:-1
so has part: feature:55855-56694:-1:exon
subclass of: SO_0000010

position:55855:-1
position: 55855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56694:-1
position: 56694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55855-56694:-1:exon

DSHI_RS22095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: DSHI_RS22095
subclass of: SO_0000673
so part of: DSHI_RS22095
location: complement(55855..56694)
location: region:55855-56694:-1
so has part: feature:55855-56694:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55855-56694:-1:exon

DSHI_RS20715
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20715
old locus tag: Dshi_4125
so part of: sequence
location: 57015..59051
location: region:57015-59051:1
so has part: feature:57015-59051:1:exon
subclass of: SO_0000010

position:57015:1
position: 57015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59051:1
position: 59051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57015-59051:1:exon

DSHI_RS20715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20715
old locus tag: Dshi_4125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMYRDLLFPRLQGLRVVLCGLWLLAPGTGAAEILAAPTRAAGPEAPVGPAPVVFGLRNAPDSAAVPTELGDGQYFVEGAVFSVRDGRLSLAAPPTTPWEGLLSDGTLSVPVAIRADHLCVATDAELDAALRLPAAEKSGLTLCLGPGRFGNFKWHAHRGAFVGLDPARPMVVTSRDPANPAILSRWIMGSTDDRPNGDLILRDLVFELDAPQVTRLSDLGFRGVTNALELGWKGIPTRNMVIERVAFRGPLGEAFAGALPVERILNGINGYALELTIRDVTFSGLMNSMQLQGEDILVEHTRTRHGWGDMLRISAVRLPEGRCRQSRNIVFRNNIMENIWSNNQYHPDAIHMFPVAKIACGVSDVTIEGNIVYMGAEGTRQPGFITGFRATDPMPVPDDLPFEPSLLHRFEAPGTTRLPAARCPERRVQLGIQKLPSEGVLRVLPPEGQVMTAYGRPAEVVEITGPWEVLRIACNGKGVDQWDLRGAKPGPQGFFSNNVVGPEGYSNLKIRHNVLWITSPNGIRFSDPDNRGLYVHHNSLLQPFPGDANGDGRPHTSADGFNPDWQGARLLLTGADVRVHHNISATLGRQRNQPGWNDNDDGLRSTDLGRSMRIRFGGPGLIQTSDGPQPGVYLPTTPREAIEMARPLPGEFLDNRRIGAVAGAAERDWYDWSWVPDR
SIO_010081: DSHI_RS20715
subclass of: SO_0000673
so part of: DSHI_RS20715
location: 57015..59051
location: region:57015-59051:1
so has part: feature:57015-59051:1:exon

WP_012187408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57015-59051:1:exon

DSHI_RS23030
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS23030
so part of: sequence
location: 59127..59258
location: region:59127-59258:1
so has part: feature:59127-59258:1:exon
subclass of: SO_0000010

position:59127:1
position: 59127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59258:1
position: 59258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59127-59258:1:exon

DSHI_RS23030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS23030
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKESVFHAENEKPIPDGIQGAKLARAGATLFADDTPVKMQVGG
SIO_010081: DSHI_RS23030
subclass of: SO_0000673
so part of: DSHI_RS23030
location: 59127..59258
location: region:59127-59258:1
so has part: feature:59127-59258:1:exon

WP_280985203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59127-59258:1:exon

DSHI_RS22930
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22930
pseudo: true
so part of: sequence
location: <59277..>59858
location: region:59277-59858:1
so has part: feature:59277-59858:1:exon
subclass of: SO_0000010

position:59277:1
position: 59277
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:59858:1
position: 59858
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59277-59858:1:exon

DSHI_RS22930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22930
inference: COORDINATES: protein motif:HMM:NF015038.2
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS66 family transposase
SIO_010081: DSHI_RS22930
subclass of: SO_0000673
so part of: DSHI_RS22930
location: <59277..>59858
location: region:59277-59858:1
so has part: feature:59277-59858:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59277-59858:1:exon

DSHI_RS23035
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS23035
so part of: sequence
location: 59847..60020
location: region:59847-60020:1
so has part: feature:59847-60020:1:exon
subclass of: SO_0000010

position:59847:1
position: 59847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60020:1
position: 60020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59847-60020:1:exon

DSHI_RS23035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS23035
inference: COORDINATES: protein motif:HMM:NF025189.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase domain-containing protein
translation: MGSEGGGKAAAVAYTLIETARMNRVDPEAWLTWVLSHIADHKVNRINELAPWNWQPS
SIO_010081: DSHI_RS23035
subclass of: SO_0000673
so part of: DSHI_RS23035
location: 59847..60020
location: region:59847-60020:1
so has part: feature:59847-60020:1:exon

WP_280985204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59847-60020:1:exon

DSHI_RS22100
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22100
old locus tag: Dshi_4128
pseudo: true
so part of: sequence
location: <60183..>60311
location: region:60183-60311:1
so has part: feature:60183-60311:1:exon
subclass of: SO_0000010

position:60183:1
position: 60183
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:60311:1
position: 60311
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60183-60311:1:exon

DSHI_RS22100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22100
old locus tag: Dshi_4128
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012778787.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATP-binding protein
SIO_010081: DSHI_RS22100
subclass of: SO_0000673
so part of: DSHI_RS22100
location: <60183..>60311
location: region:60183-60311:1
so has part: feature:60183-60311:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60183-60311:1:exon

DSHI_RS20725
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20725
old locus tag: Dshi_4129
so part of: sequence
location: complement(60514..61947)
location: region:60514-61947:-1
so has part: feature:60514-61947:-1:exon
subclass of: SO_0000010

position:60514:-1
position: 60514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61947:-1
position: 61947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60514-61947:-1:exon

DSHI_RS20725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20725
old locus tag: Dshi_4129
inference: COORDINATES: protein motif:HMM:NF024832.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oligosaccharide flippase family protein
translation: MLKAAGVVFASQGLVTVILFARNILIARLISVEDFGIASSFAIAFAFIESATNVGLNRLVVQDRDGDDQLFVDVLHLFQVVRGLLGAGVTLILAAPYAGLLNIPEVTWAFMALAWVPFIRGFLNLDMFRIQRRMDFQAFARASVLSALSSIPVVVLIYLIIGDYQTMLWAIIGHQTVLVVLSHLMAKRPFGLAFEPTILRRALGFGTPLLLNGLVMFTVINGDRLIVGNQLGVETLAWFSAVFMITYTPTTVMANTMQSVLLPRLSGLQNTREEFLVAAEDAMALGFLIGIVVAVGIALFGPILLLLAFGNKFAPGLEILLLMGVVQAVRISKLGLSMIALARGTTTNMLYANLARLLVLPAGLGALMLGHGIEGLLLASLGGELLGLLVSKVLLHRQIEPSLKVPWILVGLSGLTFGLILVLDALHPPTVEILGNVYPAQLALLILVGLAALSTRPVRNLVRGKKHPAQAQKPEKP
SIO_010081: DSHI_RS20725
subclass of: SO_0000673
so part of: DSHI_RS20725
location: complement(60514..61947)
location: region:60514-61947:-1
so has part: feature:60514-61947:-1:exon

WP_012187410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60514-61947:-1:exon

DSHI_RS20730
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20730
old locus tag: Dshi_4130
so part of: sequence
location: 62343..64739
location: region:62343-64739:1
so has part: feature:62343-64739:1:exon
subclass of: SO_0000010

position:62343:1
position: 62343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64739:1
position: 64739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62343-64739:1:exon

DSHI_RS20730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20730
old locus tag: Dshi_4130
inference: COORDINATES: protein motif:HMM:NF024627.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: right-handed parallel beta-helix repeat-containing protein
translation: MSGSSYFKDYTAHQNATILVSSTEELNAAVAELAGTTGGTVLLSGEAGPYRLDARNLGDSAESAVLITSQDSNNPAQLKQVYIDNSVYLSLTDVTIDSGDYGFERSGHLHDIYVKSGAHLQFVDLTMTSTAEAPLGFDDDTVKAEDAVYLRNASDVLFADSTISNYYHGISLAGVRDTIVTGNDISALQGDGIRGGGVNNVLVSDNHIHDFLGATNEYNHPDMIQFWTGFPEGMTNTDLTITGNLLNAGEGSAAQGILVQNEAFDDAGDPLEGVYGQNLTITDNVIHSGMSNGIGIIGYQGVEVANNSVLWNEGAVLSQTADAVPASNPPWILVRNSLEVETAGNVAHLVRIETEDQAETNYFLDYDNPSAPNYAYAHVIGLAADGQTDVYDLQFRPDSPLNGVSGAEASTWTPSEAPVNAVISQQPSLEDRAAVELSARYSTVDGQLVDPETAQVFWTLADGTVLEGLEVTVTFDTPGLHEVTLDVLAPDGSSDSATRSVDIRGNGLFEADFARSETFGDGVEIVDPNGEAFSKKGVFTLDGDSVFEVTRGNPEFETLHTLSMDVSFKPDAFEKNGWLVKWLKAVDLRVTDEKGLWLKIETDADVYEIRTEGNLLEKGEWADIAVDFDSHAGQMRLSLDGEELGRTDVEGTISGSQYDLTLGEGRGRSAEGEIDYFSMTTPPAGSVLEIGDRFPEEPEEPEELEPPVSEEEPEEPVAPSVAEEEEPEGVLIQRFLESFFAFFGGRQATEDPAPALQDDTGTITLENVSTFFREDLAEQRIPPDEEDPAEDENDFLAA
SIO_010081: DSHI_RS20730
subclass of: SO_0000673
so part of: DSHI_RS20730
location: 62343..64739
location: region:62343-64739:1
so has part: feature:62343-64739:1:exon

WP_012187411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62343-64739:1:exon

DSHI_RS22105
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22105
pseudo: true
so part of: sequence
location: complement(64749..65588)
location: region:64749-65588:-1
so has part: feature:64749-65588:-1:exon
subclass of: SO_0000010

position:64749:-1
position: 64749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65588:-1
position: 65588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64749-65588:-1:exon

DSHI_RS22105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: DSHI_RS22105
subclass of: SO_0000673
so part of: DSHI_RS22105
location: complement(64749..65588)
location: region:64749-65588:-1
so has part: feature:64749-65588:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64749-65588:-1:exon

DSHI_RS20745
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20745
old locus tag: Dshi_4133
so part of: sequence
location: 65809..66255
location: region:65809-66255:1
so has part: feature:65809-66255:1:exon
subclass of: SO_0000010

position:65809:1
position: 65809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66255:1
position: 66255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65809-66255:1:exon

DSHI_RS20745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20745
old locus tag: Dshi_4133
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017366008.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucuronosyltransferase
translation: MKKILALASAGGHWQQLMLMRPAFSAHDVVFATTLETLPEQFGAAPATIISDCNRHEKRAVLVCAWQVLRLLRRERPDVVISTGALPGVIALALGRVLGARTIWVDSVANADEMSMSGRYARRVADLWLTQWDHIARDSGAEFAGSVL
SIO_010081: DSHI_RS20745
subclass of: SO_0000673
so part of: DSHI_RS20745
location: 65809..66255
location: region:65809-66255:1
so has part: feature:65809-66255:1:exon

WP_012187412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65809-66255:1:exon

DSHI_RS20750
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20750
old locus tag: Dshi_4134
so part of: sequence
location: 66252..66728
location: region:66252-66728:1
so has part: feature:66252-66728:1:exon
subclass of: SO_0000010

position:66252:1
position: 66252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66728:1
position: 66728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66252-66728:1:exon

DSHI_RS20750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20750
old locus tag: Dshi_4134
inference: COORDINATES: protein motif:HMM:NF016027.2
GO function: GO:0016758 - hexosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MIFVTVGTQLPFPRLIAAMAEEAARLQLEVTAQVGPDPGTWPGLTVHAHLPPPRFEALFAAAEVVVAHAGIGTILSARRMGKPLIICPRDAARGEHRNNHQHATAQQVTDLPGLHVAWETSDLGPLLERRASLAPMHEAESAAHRALIVRLSGFIDAC
SIO_010081: DSHI_RS20750
subclass of: SO_0000673
so part of: DSHI_RS20750
location: 66252..66728
location: region:66252-66728:1
so has part: feature:66252-66728:1:exon

WP_012187413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66252-66728:1:exon

DSHI_RS20755
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20755
old locus tag: Dshi_4135
so part of: sequence
location: 66739..68040
location: region:66739-68040:1
so has part: feature:66739-68040:1:exon
subclass of: SO_0000010

position:66739:1
position: 66739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68040:1
position: 68040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66739-68040:1:exon

DSHI_RS20755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20755
old locus tag: Dshi_4135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009506832.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
translation: MPADTLGPASRVPPDSPALRRVQAGDLCAGCGGCASIAPDKLRMALVEPGFLRPVQSAPLSPVEEDTIAAICPGLGQRVEDAGRTPSVLWGPYLEMQTGWATDPDLRFAGSSGGALSMLLCHLLETGAVDGVIQTAAAPQLSIGNGTVLSTRSEGVLAAAGSRYAPSAPLEGLHARLTASPAQRFAFVGKPCDVAALRALQEQDPGLAARVPVLLSFFCAGVPSLRGGLEVLAALEAPYQDTVAFRYRGNGWPGYATATLADGTTRQMSYHDSWGRILSRHVQHRCKICADGTGTAADLVCADAWEADEKGYPLFDEQEGVSLIVARTVKGQQILAAAQAAGRLETAPFDPTILAAIQPGQRERRRALLARLAGLRVCGRPVPDYRGLTLKAAAAQNPLGRNLRNFFGMIRRSLRRKPGRPRLFTLPSGSSHD
SIO_010081: DSHI_RS20755
subclass of: SO_0000673
so part of: DSHI_RS20755
location: 66739..68040
location: region:66739-68040:1
so has part: feature:66739-68040:1:exon

WP_157865459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66739-68040:1:exon

DSHI_RS20760
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20760
old locus tag: Dshi_4136
so part of: sequence
location: 68033..69217
location: region:68033-69217:1
so has part: feature:68033-69217:1:exon
subclass of: SO_0000010

position:68033:1
position: 68033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69217:1
position: 69217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68033-69217:1:exon

DSHI_RS20760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20760
old locus tag: Dshi_4136
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009506831.1
GO function: GO:0016757 - glycosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide pyruvyl transferase family protein
translation: MTDDRPVQIALLFHSAVSDNLGVGALTVAEIAILRAAAEQADCRIAITIIDWKDPRPPYVDGPDVTIRQVRSREIADPRRVFALLRKMDMVVDIGAGDSFADIYGSGRLTRLFVWKYLTHLARTPLVVAPQTLGPFTRKRSQVLARDTLARSAIVATRDGMSTQAARALGVTRDILEVSDVALRLPYTPPVPRVPGGPVRVGLNVSGLLMNGGYTGKNMFGLSLDYPALMKGLIAAFQAEGCELHLVPHVITHEQGAVEDDYQVSLDLAAAFDGVQVAPRFTTPSEAKSYIAGMDFFVGARMHACIAAFSAGVPVVPMAYSRKFEGLFGSLGYMRTVDCTVLDEASLAGRILEGFAARVELKTEVSAALVRGRQKLTVYENALADLMRQCRGAT
SIO_010081: DSHI_RS20760
subclass of: SO_0000673
so part of: DSHI_RS20760
location: 68033..69217
location: region:68033-69217:1
so has part: feature:68033-69217:1:exon

WP_012187415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68033-69217:1:exon

DSHI_RS20765
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20765
old locus tag: Dshi_4137
so part of: sequence
location: complement(69126..70604)
location: region:69126-70604:-1
so has part: feature:69126-70604:-1:exon
subclass of: SO_0000010

position:69126:-1
position: 69126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70604:-1
position: 70604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69126-70604:-1:exon

DSHI_RS20765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20765
old locus tag: Dshi_4137
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: O-antigen ligase family protein
translation: MSTVELPSRPTAFQAARDARAPVLVTLALVAICIPVQFAAGPLVLSPIRFLLLICTVPLFIRLVTGSYGRILFVDVLIVAHVVWQLVAMLHNNPESAVQFVGSNGLEFLGAYLVARCGIRNRDDFVAFIKLFMLLILLLMPFAMIETQTARPVIPDLFRSLGLQGLTDVRADKRLGLERAQVVFPHPIHYGLFCSTALALVYLGLQDRMPRPKRIMLAFAIIISTVMSVSSGALLPLMIQISLIAWAGITHRTKYRWWLLIAILAPCYLLLEIISDRPAHIALLSHLTFNAHNVYWRTIIFDYGMLNVWANPIFGLGLKDWVRPSFMHSGSMDNFWLLNAVRFGVPGFLTVAGAFAIALFRIMHLRFPTDHPLRQIRLAYVVGMISLLLTLCTVHVWGPVYSLVMLFMGSGIWLITADTAAETFDETSATEPARPQSRYTRFATQTVPKTSRANAGTRKAAAVRSRHGTGASGPPERSHRQSISAGRGPGRR
SIO_010081: DSHI_RS20765
subclass of: SO_0000673
so part of: DSHI_RS20765
location: complement(69126..70604)
location: region:69126-70604:-1
so has part: feature:69126-70604:-1:exon

WP_012187416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69126-70604:-1:exon

DSHI_RS20770
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20770
old locus tag: Dshi_4138
so part of: sequence
location: complement(70715..71707)
location: region:70715-71707:-1
so has part: feature:70715-71707:-1:exon
subclass of: SO_0000010

position:70715:-1
position: 70715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71707:-1
position: 71707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70715-71707:-1:exon

DSHI_RS20770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20770
old locus tag: Dshi_4138
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008229977.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNPDAPTAGADSSGKVLLIKAKGGLGNRMLSAVTGLIYADLAGRRPVIDWRDGVYAPRGENAYPLLFQSPDMPDPALFDDRTDGVTPAIWAGRLDEFPVTMVDGDHSGPLVYRKSCVDLSRLDHDAALAVFWSYVSKLPRLRGHMARDPRFRGRSARDIMADYLTRYFSPNPRVEAAVAAALGPLARPVIGAHLRYTDMAGPLEAVKQSLAALRTQMPEAPIFLATDSARAQDDIRATFGDVHITEKYLPKDGRHLHGAQADGIDPVLEAENAMIDMWALARCDHLVYSKNSTFSGTSAIIGGLSGDRLVNVDRFNPKIVIKRFLQDYL
SIO_010081: DSHI_RS20770
subclass of: SO_0000673
so part of: DSHI_RS20770
location: complement(70715..71707)
location: region:70715-71707:-1
so has part: feature:70715-71707:-1:exon

WP_012187417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:70715-71707:-1:exon

DSHI_RS20775
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
gene: gmd
locus tag: DSHI_RS20775
old locus tag: Dshi_4139
so part of: sequence
location: complement(71700..72767)
location: region:71700-72767:-1
so has part: feature:71700-72767:-1:exon
subclass of: SO_0000010

position:71700:-1
position: 71700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72767:-1
position: 72767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71700-72767:-1:exon

DSHI_RS20775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
gene: gmd
locus tag: DSHI_RS20775
old locus tag: Dshi_4139
EC number: 4.2.1.47
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012556676.1
GO function: GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GDP-mannose 4,6-dehydratase
translation: MLKRALITGVTGQDGAYLSELLLAKGYDVHGIKRRSSSFNSARIDHLYQDPHEADRRFTMHYGDMTDSTNLIRVVQEVQPDEIYNLAAQSHVQVSFDTPEYTANADAVGTLRLLEALRILGMEKTTRFYQASTSELYGLVQEVPQSETTPFYPRSPYAAAKLYAYWITVNYREAYGIHASNGILFNHESPLRGETFVTRKITRAVAAIHLGRQDRFYLGNLDAKRDWGHARDYVEGMWRIVQQDKAEDYVLATGETHTVRSFVDAAFAEIGVTLEWRGAGVDEKGYDTADGTLRVEVDPRYFRPTEVDLLIGDPSKAHRELGWRHTTTLAEMVSEMVASDIKVIAEEGERRERHD
SIO_010081: DSHI_RS20775
subclass of: SO_0000673
so part of: DSHI_RS20775
location: complement(71700..72767)
location: region:71700-72767:-1
so has part: feature:71700-72767:-1:exon

WP_044029572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71700-72767:-1:exon

DSHI_RS20780
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20780
old locus tag: Dshi_4140
so part of: sequence
location: complement(72811..73629)
location: region:72811-73629:-1
so has part: feature:72811-73629:-1:exon
subclass of: SO_0000010

position:72811:-1
position: 72811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73629:-1
position: 73629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72811-73629:-1:exon

DSHI_RS20780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20780
old locus tag: Dshi_4140
inference: COORDINATES: protein motif:HMM:NF012888.2
GO function: GO:0008146 - sulfotransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfotransferase domain-containing protein
translation: MKLGRHHLNQRTLRKMRRDLRHRIVGLPWMNVSKEHCILASWPRSGNTWLRHILFFYFYQSDQVDMTKLDQYMPLIDSVDLKTHLAAPNPAPYRFIKSHELGVPYFLNGRIILIVRDGRDATYSWHHYMQSVHGLKSDFPTFLGACLRDRYRYKSWHTNLASWLDLEAGDAMLILRYEDTLTEPDKALRRILAFLKLPVDEERLQYALEKSSRDAVSKSFQTMKNTNNVVGFSGTAGGPTKERWRSTFTKAQNDTFVAQAGALLSQFGYPLE
SIO_010081: DSHI_RS20780
subclass of: SO_0000673
so part of: DSHI_RS20780
location: complement(72811..73629)
location: region:72811-73629:-1
so has part: feature:72811-73629:-1:exon

WP_157865460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72811-73629:-1:exon

DSHI_RS20785
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20785
old locus tag: Dshi_4141
so part of: sequence
location: complement(73755..74459)
location: region:73755-74459:-1
so has part: feature:73755-74459:-1:exon
subclass of: SO_0000010

position:73755:-1
position: 73755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74459:-1
position: 74459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73755-74459:-1:exon

DSHI_RS20785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20785
old locus tag: Dshi_4141
inference: COORDINATES: protein motif:HMM:NF024775.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FkbM family methyltransferase
translation: MTELASGPGLFLRRAWRNLNRRVSRVWLDMRGPRIEHDMIRLGSEGNGWYAPSDLPEGALCYCIGVGLDASFDFELAARGAEVHAFDPTPLAIDYMARKNEDRVTFHPWGVLDSDSSMRLYFPMNTAHGSHFAEDLHGTGQYHEVPCYRMSTILDRLGHRDRQIHLVKMDIEGSWFAALQDMMASGIYPTFLEVEYDSPAPVWRVSKVARLLESHGYALILRDADNAIYKRVPS
SIO_010081: DSHI_RS20785
subclass of: SO_0000673
so part of: DSHI_RS20785
location: complement(73755..74459)
location: region:73755-74459:-1
so has part: feature:73755-74459:-1:exon

WP_012187420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73755-74459:-1:exon

DSHI_RS20790
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20790
old locus tag: Dshi_4142
so part of: sequence
location: 74668..75609
location: region:74668-75609:1
so has part: feature:74668-75609:1:exon
subclass of: SO_0000010

position:74668:1
position: 74668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75609:1
position: 75609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74668-75609:1:exon

DSHI_RS20790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20790
old locus tag: Dshi_4142
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012977883.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GDP-L-fucose synthase
translation: MDISDRIYVAGHRGMVGSAICRALTAQGYTNQLTRTRAELDLLDGATVRAFFEAERPDHVFLAAAKVGGILANDTEGGDFIRENLLIQTHVIDAAYRAGVQKFAFLGSSCIYPKFAPQPISEDSLLTGALEPTNSAYAVAKIAGKEMCDAYRRQFGFDAFTIMPCNVYGVGDNFDPLGSHVAAGLMRRFHEAKTVGASEVTCWGTGSPLREFIYADDLGDACVFLMNTYTEGGMINAGSGQEVTIRALAETIRDVVGFEGALVWDETKPDGTPRKLMDNSRLAALGWKPKIELRDGLTEMYRWFVDTHATERA
SIO_010081: DSHI_RS20790
subclass of: SO_0000673
so part of: DSHI_RS20790
location: 74668..75609
location: region:74668-75609:1
so has part: feature:74668-75609:1:exon

WP_012187421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74668-75609:1:exon

DSHI_RS20795
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20795
old locus tag: Dshi_4143
so part of: sequence
location: 75619..76494
location: region:75619-76494:1
so has part: feature:75619-76494:1:exon
subclass of: SO_0000010

position:75619:1
position: 75619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76494:1
position: 76494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75619-76494:1:exon

DSHI_RS20795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20795
old locus tag: Dshi_4143
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013959954.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MARIALIIPHYNDTARLATCLGALAPQMTEAVELIVVDNGSTEDLGPIEALLQGRFPGARLIHEPGKGAAFARNRGVAETTAPDLLFLDADCVPGPDWLTTALSLAGRDRVVGGRVDVFDETPPPRSGPEAFETVFAFHQKTYVEGKGFSVTANLLTSRTVFDRTGPFINALSEDLDWCRRAVATGAPLVYEDALAVAHPTRQDWPALRKKWLRLTEEGFATHGTNLPARASWALRAGAVLVSGPAHLPKVLHHDALSAVEKRRGAVTLLRLRGSRAVWMLRQALRGASKM
SIO_010081: DSHI_RS20795
subclass of: SO_0000673
so part of: DSHI_RS20795
location: 75619..76494
location: region:75619-76494:1
so has part: feature:75619-76494:1:exon

WP_012187422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75619-76494:1:exon

DSHI_RS20800
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20800
old locus tag: Dshi_4144
so part of: sequence
location: complement(76612..77184)
location: region:76612-77184:-1
so has part: feature:76612-77184:-1:exon
subclass of: SO_0000010

position:76612:-1
position: 76612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77184:-1
position: 77184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76612-77184:-1:exon

DSHI_RS20800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20800
old locus tag: Dshi_4144
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009506838.1
GO function: GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyltransferase
translation: MSETDPHPRKKSLSYPARVLRGIGAMLDPRAWAHAVRLVNYYNYSHVIPRRSLRLGRDVRLSPNAAFSNPERIEIGDRVSIGAHCTLWAGPGTGRIEIGADALFGPEVFVTAAGYRFNEGSPVTAQAMDEADVVIGRDVWLGARAMVMPGARIGDGAIIGAGALVRGEIPAGAIAVGVPARVVGQRAADP
SIO_010081: DSHI_RS20800
subclass of: SO_0000673
so part of: DSHI_RS20800
location: complement(76612..77184)
location: region:76612-77184:-1
so has part: feature:76612-77184:-1:exon

WP_012187423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76612-77184:-1:exon

DSHI_RS20805
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20805
old locus tag: Dshi_4145
so part of: sequence
location: complement(77191..78195)
location: region:77191-78195:-1
so has part: feature:77191-78195:-1:exon
subclass of: SO_0000010

position:77191:-1
position: 77191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78195:-1
position: 78195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77191-78195:-1:exon

DSHI_RS20805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20805
old locus tag: Dshi_4145
EC number: 2.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008209683.1
GO function: GO:0016757 - glycosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MTLPPSEVVPKASHAPDRAPKTDGSDGPELTVIVVSYNTRDLTLAALRTLYAETCQTAFRTVVFDNASEDGSVAAIAAEFPQVELIASQDNVGFAKANNLVAAEARTEWILLLNPDTEVQNGAVDRLMAFAKAHPENGIYGGRTVFPDGSLNIASCWQRITPWSLVCSTFGLTALFPKTELFHPEAMGGWQRDSVREVDIVVGCFMLMKRSLWEDLGGFDLRYFMYGEEADLCLRAAAKGWQPIVTPDAQIMHIVGAASKSQGGKKVLLARARATLIRDHWPAALVPLGLGLMWLWAGLRAGVLSVLGPLTGRRVAQEAWQMVWRARKIWMKGY
SIO_010081: DSHI_RS20805
subclass of: SO_0000673
so part of: DSHI_RS20805
location: complement(77191..78195)
location: region:77191-78195:-1
so has part: feature:77191-78195:-1:exon

WP_012187424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77191-78195:-1:exon

DSHI_RS20810
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20810
old locus tag: Dshi_4146
so part of: sequence
location: complement(78217..79641)
location: region:78217-79641:-1
so has part: feature:78217-79641:-1:exon
subclass of: SO_0000010

position:78217:-1
position: 78217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79641:-1
position: 79641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78217-79641:-1:exon

DSHI_RS20810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20810
old locus tag: Dshi_4146
EC number: 2.7.7.13
EC number: 5.3.1.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013959937.1
GO function: GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
translation: MITPVILCGGSGTRLWPLSRKSYPKQFVPLAGVQETLFQASATRLKGPGIGLPLVVTGPDFRFIATDQLAEMGVEQATVLIEPAARNTAPAILAAALWVEARDPDALMLVMPSDHVIPDAAAFAATVARAEPEARAGRLVTFGIVPERAETGYGWLELSETPTEAPQPLKRFVEKPDAATAEAMLEAGTYLWNAGIFLFSVAALRAAFEAHQPDMLAAVSASVAGARQDLSFHRLDPAPWAEAADISIDYAIMERADNLSVVPYHGHWSDLGGWDAVWREAGPDEDGVVTTGPASALDCENTLLHATAEGQEVVGLGLRDTLVVAMPDAVLVADASRAQEVRAAVETLKIKGAAQAETFPRDHRPWGWFETLALGDRFQVKRIVVKPGAALSLQSHVHRSEHWIVVAGTAKVTVDDTTRLISENQSVYIPLGAVHRMDNPGKVPMVLIEVQTGAYLGEDDIIRYEDVYARDSDD
SIO_010081: DSHI_RS20810
subclass of: SO_0000673
so part of: DSHI_RS20810
location: complement(78217..79641)
location: region:78217-79641:-1
so has part: feature:78217-79641:-1:exon

WP_012187425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78217-79641:-1:exon

DSHI_RS20815
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20815
old locus tag: Dshi_4147
so part of: sequence
location: complement(79830..80822)
location: region:79830-80822:-1
so has part: feature:79830-80822:-1:exon
subclass of: SO_0000010

position:79830:-1
position: 79830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80822:-1
position: 80822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79830-80822:-1:exon

DSHI_RS20815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20815
old locus tag: Dshi_4147
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF025025.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MRDARASAPGAVPVLPLSTGAALPHVRILMGTWEGGAHLRAQLDSFADQTHGDWSLWVSDDGSRDDTRAVLAGFAADHSTREIRLFDGPRAGAAANYLSLLSRPELPRDGAVIALSDQDDVWMPDRLAQALAHLARHPDDRPVLYAANTVLTDRALRPIRQIAPRGEAPGFENALVQNIVAGNTVALNPAAAAVARGAIPPGPVPYHDWWLYLLITGAGGIVAYDRGQRLWYRQHEGNVLGAHRGARAGLRRVRLMLDGTYGGWLRDNLAALEAVAAHLTPEHAAQVARLRADAGRGGWTRWRSLKAAGIHRKSWLGTLALAGLAIAGRI
SIO_010081: DSHI_RS20815
subclass of: SO_0000673
so part of: DSHI_RS20815
location: complement(79830..80822)
location: region:79830-80822:-1
so has part: feature:79830-80822:-1:exon

WP_012187426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79830-80822:-1:exon

DSHI_RS20820
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20820
old locus tag: Dshi_4148
so part of: sequence
location: complement(80815..81597)
location: region:80815-81597:-1
so has part: feature:80815-81597:-1:exon
subclass of: SO_0000010

position:80815:-1
position: 80815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81597:-1
position: 81597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80815-81597:-1:exon

DSHI_RS20820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20820
old locus tag: Dshi_4148
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009506806.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MRPVTRRSFATFRTIGALVLREMSTTYGRSAGGYLWAILEPAAGIALMTLIFSLGFRSPPLGTNFPIFYATGLVPFLMYLDVSGKVSVSVLFSKQLLAYPAVTYVDAILARFILNTLTQLMVGYVIFTGILLAFDTRTTLELDKIALGFAMTAALALGVGTLNCFLTSMFPIWQRIWSIANRPLFILSCIFFTFESVPQPFRDYLWYVPTVHLTGTFRAAFYPGYEAAYVSAIYVFGLSGVMMAVGLVFLRRYHRDILDA
SIO_010081: DSHI_RS20820
subclass of: SO_0000673
so part of: DSHI_RS20820
location: complement(80815..81597)
location: region:80815-81597:-1
so has part: feature:80815-81597:-1:exon

WP_044029548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80815-81597:-1:exon

DSHI_RS20825
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20825
old locus tag: Dshi_4149
so part of: sequence
location: 81926..82657
location: region:81926-82657:1
so has part: feature:81926-82657:1:exon
subclass of: SO_0000010

position:81926:1
position: 81926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82657:1
position: 82657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81926-82657:1:exon

DSHI_RS20825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20825
old locus tag: Dshi_4149
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020039275.1
GO function: GO:0016746 - acyltransferase activity [Evidence IEA]
GO process: GO:0046677 - response to antibiotic [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CatB-related O-acetyltransferase
translation: MSTVTVGTRQLKNSGVEVLPRGNAQTITLPLNTRIEAPASLKWTQYEHSLHLGAFSYQVSGYCFAARIGRYCSFGEEVQIGRQNHPLTWASTSPAFYLGDRLFALEDGFEGAQGYHGYKFDFDGPPTRAQITRIGNDVWIGHGAYIAAGVTIGDGAIVAAHAVVAKDVPPYAVVAGNPAVIKRMRLPAELITPMLRCKWWRYAPWQLDHLDPSNAQAFVSGVFGMKDAPVFEPTVVDLKETTP
SIO_010081: DSHI_RS20825
subclass of: SO_0000673
so part of: DSHI_RS20825
location: 81926..82657
location: region:81926-82657:1
so has part: feature:81926-82657:1:exon

WP_012187428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81926-82657:1:exon

DSHI_RS20830
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS20830
old locus tag: Dshi_4150
so part of: sequence
location: 82654..83457
location: region:82654-83457:1
so has part: feature:82654-83457:1:exon
subclass of: SO_0000010

position:82654:1
position: 82654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83457:1
position: 83457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82654-83457:1:exon

DSHI_RS20830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS20830
old locus tag: Dshi_4150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012187407.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0008146 - sulfotransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfotransferase family 2 domain-containing protein
translation: MTTALRPSGARTLGPDAPIVFLHIPKTAGQTIHAELTRIAGAEAVSPVRVHTQVETEAAQLPPGYSVYSGHLDWTALDSLPAHRFTFSVLRSPRERIASFYFYLLKEARAQTPEELEKPHRAGMKRISTVSAEEYFCGGDRPWQVFVHDHYDNFYARYFAARRMRAWARTRETAPQALLETARTHIAADLDRVYSTEDLGALEQDIAARYGLAISVTDRFVNTGDQPRGEARWPRLMALLDTDAARAKLTAFVQTDEALLARLGLGA
SIO_010081: DSHI_RS20830
subclass of: SO_0000673
so part of: DSHI_RS20830
location: 82654..83457
location: region:82654-83457:1
so has part: feature:82654-83457:1:exon

WP_012187429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82654-83457:1:exon

DSHI_RS22475
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22475
so part of: sequence
location: 84078..84323
location: region:84078-84323:1
so has part: feature:84078-84323:1:exon
subclass of: SO_0000010

position:84078:1
position: 84078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84323:1
position: 84323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84078-84323:1:exon

DSHI_RS22475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22475
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIAELAKELADRIRVRAQAGRVMQGRCQFRHRDVTILHNDFRKEHPVWIEFSFALGAALRCGASSSGPADRNFPPRTCSR
SIO_010081: DSHI_RS22475
subclass of: SO_0000673
so part of: DSHI_RS22475
location: 84078..84323
location: region:84078-84323:1
so has part: feature:84078-84323:1:exon

WP_157865461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84078-84323:1:exon

DSHI_RS22115
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22115
old locus tag: Dshi_4152
so part of: sequence
location: complement(84463..85098)
location: region:84463-85098:-1
so has part: feature:84463-85098:-1:exon
subclass of: SO_0000010

position:84463:-1
position: 84463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85098:-1
position: 85098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84463-85098:-1:exon

DSHI_RS22115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22115
old locus tag: Dshi_4152
inference: COORDINATES: protein motif:HMM:NF012967.2
GO function: GO:0016740 - transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-homoserine-lactone synthase
translation: MITIARGHDLWRFPSSADKMFEDRRIQFKERNKWNVHIDSDGYEVDQYDRLNPVYIIIHSSENPHCGSMRILPLGKGTMLMDYFSETVKGYSFKDKKIWECTRFCVSKGQGRSVALKLFASGSAFLSYTGFSNFIAIFDKKMLRFYRAIGISPKIIGVYSYLGEEVYSGLFNCNQERYKKFLISGNIESSTITGAISRFHERETYIYPKAA
SIO_010081: DSHI_RS22115
subclass of: SO_0000673
so part of: DSHI_RS22115
location: complement(84463..85098)
location: region:84463-85098:-1
so has part: feature:84463-85098:-1:exon

WP_012187430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84463-85098:-1:exon

DSHI_RS22120
type: Gene
subclass of: SO_0000704
RO_0002162: 398580
locus tag: DSHI_RS22120
pseudo: true
so part of: sequence
location: complement(<85241..86179)
location: region:85241-86179:-1
so has part: feature:85241-86179:-1:exon
subclass of: SO_0000010

position:85241:-1
position: 85241
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:86179:-1
position: 86179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85241-86179:-1:exon

DSHI_RS22120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 398580
locus tag: DSHI_RS22120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011112884.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS481 family transposase
SIO_010081: DSHI_RS22120
subclass of: SO_0000673
so part of: DSHI_RS22120
location: complement(<85241..86179)
location: region:85241-86179:-1
so has part: feature:85241-86179:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85241-86179:-1:exon