Corynebacterium glucuronolyticum strain FDAARGOS_1111 plasmid unnamed, complete sequence.
type: Entry
definition: Corynebacterium glucuronolyticum strain FDAARGOS_1111 plasmid unnamed, complete sequence.
sequence version: NZ_CP068163.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP068163.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16357280
keyword: RefSeq
source: Corynebacterium glucuronolyticum
organism: Corynebacterium glucuronolyticum
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP068163.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 8.0.0, HGAP v. 4\nGenome Coverage :: 1093.18x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 05:56:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,624\nCDSs (total) :: 2,558\nGenes (coding) :: 2,509\nCDSs (with protein) :: 2,509\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 20 of 49\nPseudo Genes (incomplete) :: 36 of 49\nPseudo Genes (internal stop) :: 11 of 49\nPseudo Genes (multiple problems) :: 17 of 49\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20681
topology: circular
so has quality: SO_0000988
location: 1..20681
location: region:1-20681:1
RO_0002162: 39791

NZ_CP068163
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16357280
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
author: Sichtig, H.
journal: Submitted (11-JAN-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20681:1
position: 20681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20681:1:source
so part of: sequence
organism: Corynebacterium glucuronolyticum
mol type: genomic DNA
strain: FDAARGOS_1111
culture collection: DSM:100936
plasmid: unnamed
country: Germany: Braunschweig
collected by: DSMZ

39791
type: Taxonomy
SIO_000068: taxonomy

I6I68_RS12935
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
gene: mobF
locus tag: I6I68_RS12935
old locus tag: I6I68_12935
so part of: sequence
location: 166..4641
location: region:166-4641:1
so has part: feature:166-4641:1:exon
subclass of: SO_0000010

75011793
type: Gene
SIO_000068: ncbigene

position:166:1
position: 166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4641:1
position: 4641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166-4641:1:exon

I6I68_RS12935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
gene: mobF
locus tag: I6I68_RS12935
old locus tag: I6I68_12935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326132.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MMTLRVVNSGTGYEYLLRSVATNDGPTDAPSLSKYYDAKGTPPGRWLGSGLAGLNTENVVQGGEVTESQMAALYGEGLHPDADMKMSEGQKIKDVQLGRPFANFTNDVPVLVALRDAERRHRQTTGTLMGKQERAELVQDIGREFFIEEHGVEPQSGREIVNWVNGLKDNVRQSVSGFDLTFSPAKSVSVVWALSDEETARRIEKLHHQAVKEAMAWAEDNALFTRVGKQGREQVKTKGFVASEFKHYDTRAGDPDLHSHVLVSNKVQTEDGRWLSIDGYTLMKYHQSISHRYDSILNTLLSNEMGYTFTARDHGANKEPTWEIEGVSESLMESFSKRRRGAQPVYKRLVEEFVAARGTTPNSVEVGRLWQQAILETRDAKREPESLTELRAGWKAEVAARDTGAEELASINQLAADSARDERPLFDAEDHLSGLIDGVLDTVVRRRSYFRASHVATAAGGKLQGYRFASLAERDLIHATVVEAIVRDKAISLNDFDVLELPEALKNSAGKARDARADSELYTTQDILDTEDKALGALNEPVAAFAPSAAIDKALDEHEAESGFRLNAGQESMARYLLTCGTLAATGVGPAGTGKTASMRLVANVWANQGRNVIGLAPSAQAAEVLSGDLGFDAFTIDKLTYTWRGNHPTKPGHSLKDLPVSINAGDMIIVDEAGMASTPNIGSLLEIAEEAGAVVRFIGDHKQLGAVENGGLFGAMVNAAGRTDNQLSEVVRFGGDSAQSATSLRLREGDSSTFDFYLERGWVNGGARSDMLDKAAADYLADISSGKTSLLIAATNRDVAELNETIRAHYIAVGVVDTTVEAQLSRGEKAGVGDTILARKNQTFYDDETATSTRINNGTLLTVTAIAENGSITARNTATGEELCLPADYVHDNVQLGYAATVHRAQGSTVDCTRAVIDYHVDRAGLYVALTRGKIANHIYAVIEHQLDELAEEGHYHYQGIDHAPSIRDVFDKAISRDTTPKAAREVIADVVDEQTSPDRIMGLWLMGKDEATNDFIDAYLPDWIDTLPGDLAQKIEASDDGVAPIRYGWAQLIDAGIDPRTVMDAATRDIDNAHDPARLIRYRLDEQLRQLDTGKRNQLPPISRHADMELDTWLRTHNPYDRAETTRLTGQENNLNRLNQEVLAEHARFARSKVESLTWQEASITTRLHEDKDAAANEVKADYQQVRLDAARIRAYEQAMADHSAALRDEETARADIEHQRLLAEDYTRPVTERAYDHDADGYGTYQQRIDQAHKRLEQAQQRRSLAQQAIEDTGCSLPEAGLWEEICYRADDHEEWDKRLREAEHHDSEHTHKLQQRLDTIRREKMDFADRADIAIRLRAEEIPHDVADHAGYIADEVNLLAAQRTYELRRLGVDEPAQEAIRDMVAETIAAAYEQDNDDTHHDEQNTAVQNKAEEEQPAPETTTADESADNTQGEDTGGLNEGARASLDFLASLGLGGEQQSVTSDSDTTDEQASADEIEEEQGPEL
SIO_010081: I6I68_RS12935
subclass of: SO_0000673
so part of: I6I68_RS12935
location: 166..4641
location: region:166-4641:1
so has part: feature:166-4641:1:exon

WP_201829664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166-4641:1:exon

I6I68_RS12940
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12940
old locus tag: I6I68_12940
so part of: sequence
location: complement(4726..4962)
location: region:4726-4962:-1
so has part: feature:4726-4962:-1:exon
subclass of: SO_0000010

75011794
type: Gene
SIO_000068: ncbigene

position:4726:-1
position: 4726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4962:-1
position: 4962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4726-4962:-1:exon

I6I68_RS12940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12940
old locus tag: I6I68_12940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187791.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide transporter
translation: MAIPKAKNKARKESSGNRSESSPSTKMFAQANDKATRLQLYVRDRQLIKELKLAAVEEEKSISQLFEEWATRWLEERS
SIO_010081: I6I68_RS12940
subclass of: SO_0000673
so part of: I6I68_RS12940
location: complement(4726..4962)
location: region:4726-4962:-1
so has part: feature:4726-4962:-1:exon

WP_201829662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4726-4962:-1:exon

I6I68_RS12945
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12945
old locus tag: I6I68_12945
so part of: sequence
location: complement(4973..5569)
location: region:4973-5569:-1
so has part: feature:4973-5569:-1:exon
subclass of: SO_0000010

75011795
type: Gene
SIO_000068: ncbigene

position:4973:-1
position: 4973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5569:-1
position: 5569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4973-5569:-1:exon

I6I68_RS12945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12945
old locus tag: I6I68_12945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012468097.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTRVISVIQSKGGTGKTTLSVMLAEAIRKMGYTVAVADGDPQQSATRWAAKVQDFPFPIESVRSSSDFSGVVRRGNNPDFLIVDTPPGGLAFITESAKAADLVLLPTGVSPMDIDRTQVTLSWLIEMGIPTAVVLSNVDRREKLLDEVHAELEGDETAALAETVIPTRAATRRVFGTKPKTTKVWDSLAKEVVAAFED
SIO_010081: I6I68_RS12945
subclass of: SO_0000673
so part of: I6I68_RS12945
location: complement(4973..5569)
location: region:4973-5569:-1
so has part: feature:4973-5569:-1:exon

WP_201829660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4973-5569:-1:exon

I6I68_RS12955
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12955
old locus tag: I6I68_12955
pseudo: true
so part of: sequence
location: 6241..>6557
location: region:6241-6557:1
so has part: feature:6241-6557:1:exon
subclass of: SO_0000010

75011796
type: Gene
SIO_000068: ncbigene

position:6241:1
position: 6241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6557:1
position: 6557
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6241-6557:1:exon

I6I68_RS12955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12955
old locus tag: I6I68_12955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558200.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: I6I68_RS12955
subclass of: SO_0000673
so part of: I6I68_RS12955
location: 6241..>6557
location: region:6241-6557:1
so has part: feature:6241-6557:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6241-6557:1:exon

I6I68_RS12960
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12960
old locus tag: I6I68_12960
so part of: sequence
location: complement(6678..7184)
location: region:6678-7184:-1
so has part: feature:6678-7184:-1:exon
subclass of: SO_0000010

75011797
type: Gene
SIO_000068: ncbigene

position:6678:-1
position: 6678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7184:-1
position: 7184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6678-7184:-1:exon

I6I68_RS12960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12960
old locus tag: I6I68_12960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016934421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIN domain-containing protein
translation: MLRDILIRLAGTGIYQARWTEDILDEVFRNLQANRPDLDPSKLRRTRELMCRAVDDCLVTGYEDLIESLSLPDPDDRHVLAAAIRCGAQVIVTENARDFPQDVMDKYGIEIQGADEFLCDQIDLFGTRVHQAITYAAAAFKNPPMTIDDVLDALARAGAPSAADLLRR
SIO_010081: I6I68_RS12960
subclass of: SO_0000673
so part of: I6I68_RS12960
location: complement(6678..7184)
location: region:6678-7184:-1
so has part: feature:6678-7184:-1:exon

WP_236589345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6678-7184:-1:exon

I6I68_RS12965
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12965
old locus tag: I6I68_12965
so part of: sequence
location: complement(7229..7678)
location: region:7229-7678:-1
so has part: feature:7229-7678:-1:exon
subclass of: SO_0000010

75011798
type: Gene
SIO_000068: ncbigene

position:7229:-1
position: 7229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7678:-1
position: 7678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7229-7678:-1:exon

I6I68_RS12965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12965
old locus tag: I6I68_12965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018654321.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MAYLQDNEIASTAATAREALQKINRVLSDTSTNKDVKVVVEQSDEVIRLPREVATVLREILVNSVAGRSVSVIPMRAELTTQQAANLLNVSRPHVIKLMDDGILPGHKVGTHRRIYAADVQAYKHQRDIEARTAADDLTALTEEMGLYE
SIO_010081: I6I68_RS12965
subclass of: SO_0000673
so part of: I6I68_RS12965
location: complement(7229..7678)
location: region:7229-7678:-1
so has part: feature:7229-7678:-1:exon

WP_086892529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7229-7678:-1:exon

I6I68_RS12970
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12970
old locus tag: I6I68_12970
so part of: sequence
location: 7860..8117
location: region:7860-8117:1
so has part: feature:7860-8117:1:exon
subclass of: SO_0000010

75011799
type: Gene
SIO_000068: ncbigene

position:7860:1
position: 7860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8117:1
position: 8117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7860-8117:1:exon

I6I68_RS12970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12970
old locus tag: I6I68_12970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLSPDGFHIESHIDAVPALARVKNLHDGLSSGQQALGRIVQSLLADADALDGIQLYALTDAIESYRDAVIEQENAAFNSPRGED
SIO_010081: I6I68_RS12970
subclass of: SO_0000673
so part of: I6I68_RS12970
location: 7860..8117
location: region:7860-8117:1
so has part: feature:7860-8117:1:exon

WP_201842011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7860-8117:1:exon

I6I68_RS12975
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12975
old locus tag: I6I68_12975
so part of: sequence
location: 8117..8710
location: region:8117-8710:1
so has part: feature:8117-8710:1:exon
subclass of: SO_0000010

75011800
type: Gene
SIO_000068: ncbigene

position:8710:1
position: 8710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8117-8710:1:exon

I6I68_RS12975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12975
old locus tag: I6I68_12975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005323698.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKSSGSRGQRVGYIRVSTVEQNNQRQKELLNTSGRIDRFFEDKISGRTKSARPGLVECMAYVRDGDELVVSSIDRLARSLTDLRGIVDELTGKGVTVTFLHENLAFAKGTSNPRADLMLGILGSFAEFERAIIRERQAEGIALAKKAGKYKGRKPALSPGQVSEIKRRVVAGESKAALAREFGVTRPTVYRALKNA
SIO_010081: I6I68_RS12975
subclass of: SO_0000673
so part of: I6I68_RS12975
location: 8117..8710
location: region:8117-8710:1
so has part: feature:8117-8710:1:exon

WP_201829654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8117-8710:1:exon

I6I68_RS12980
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12980
old locus tag: I6I68_12980
so part of: sequence
location: 9035..9184
location: region:9035-9184:1
so has part: feature:9035-9184:1:exon
subclass of: SO_0000010

75011801
type: Gene
SIO_000068: ncbigene

position:9035:1
position: 9035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9184:1
position: 9184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9035-9184:1:exon

I6I68_RS12980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12980
old locus tag: I6I68_12980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187836.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKHSLDTPGRKRKDPATKGTAILNLVSGVLNVATAIVKFVTAILHVGL
SIO_010081: I6I68_RS12980
subclass of: SO_0000673
so part of: I6I68_RS12980
location: 9035..9184
location: region:9035-9184:1
so has part: feature:9035-9184:1:exon

WP_201829652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9035-9184:1:exon

I6I68_RS12985
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12985
old locus tag: I6I68_12985
pseudo: true
so part of: sequence
location: <9908..10126
location: region:9908-10126:1
so has part: feature:9908-10126:1:exon
subclass of: SO_0000010

75011802
type: Gene
SIO_000068: ncbigene

position:9908:1
position: 9908
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:10126:1
position: 10126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9908-10126:1:exon

I6I68_RS12985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12985
old locus tag: I6I68_12985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612047.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: I6I68_RS12985
subclass of: SO_0000673
so part of: I6I68_RS12985
location: <9908..10126
location: region:9908-10126:1
so has part: feature:9908-10126:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9908-10126:1:exon

I6I68_RS12990
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS12990
old locus tag: I6I68_12990
pseudo: true
so part of: sequence
location: complement(<10163..10411)
location: region:10163-10411:-1
so has part: feature:10163-10411:-1:exon
subclass of: SO_0000010

75011803
type: Gene
SIO_000068: ncbigene

position:10163:-1
position: 10163
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10411:-1
position: 10411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10163-10411:-1:exon

I6I68_RS12990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS12990
old locus tag: I6I68_12990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558196.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: I6I68_RS12990
subclass of: SO_0000673
so part of: I6I68_RS12990
location: complement(<10163..10411)
location: region:10163-10411:-1
so has part: feature:10163-10411:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10163-10411:-1:exon

I6I68_RS13410
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13410
pseudo: true
so part of: sequence
location: <10455..>11254
location: region:10455-11254:1
so has part: feature:10455-11254:1:exon
subclass of: SO_0000010

75011884
type: Gene
SIO_000068: ncbigene

position:10455:1
position: 10455
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11254:1
position: 11254
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10455-11254:1:exon

I6I68_RS13410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019311167.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MFS transporter
SIO_010081: I6I68_RS13410
subclass of: SO_0000673
so part of: I6I68_RS13410
location: <10455..>11254
location: region:10455-11254:1
so has part: feature:10455-11254:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10455-11254:1:exon

I6I68_RS13000
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13000
old locus tag: I6I68_13000
so part of: sequence
location: complement(11423..13195)
location: region:11423-13195:-1
so has part: feature:11423-13195:-1:exon
subclass of: SO_0000010

75011804
type: Gene
SIO_000068: ncbigene

position:11423:-1
position: 11423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13195:-1
position: 13195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11423-13195:-1:exon

I6I68_RS13000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13000
old locus tag: I6I68_13000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011273121.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSNATTPVSSRLRDPLLTRSVKKLQSPVGHKLNKRYACLSLIVGVLDGLAVLTLVPLTKALDGDTTIAPWMWTLLAIALVAFALRFFATMASYHTALDFIRAAHTTVGDKLATLPLGWFVPANTGGLSRLVSDRFMVAAETIAHIQGTIYRDSAALVTLLVGACFWNPKLGLVLLIIAPLALVVMQLAAWIREKASNRALGPSKELSQRIVEFANRQPALRAAGQSQVFAPLEQALEIDHKARIRELWVSTLALLLNGIVVQIFIVALIMVSADLAVEGALSPLETIAIIGISLRFTRTLEQLGSSFVGLDAGRIALAETELITDAPSLPEPTTPRLGDGSGNVELLNVTFGYGDKPVLVDVTFHARPGTVTAIVGPSGSGKTTIARLISRFWDVDSGAVMVDGVDIRDLGTEQLMSRLSMVFQDVYLFDDSLIANIRVGRPDASDEEVFRAADLSGVTSIANRLGWHTPVGEGGRLLSGGERQRVSVARALLKQAPIVLFDEATSALDAENEANILAAMDELREQSTFIVIAHKLDTIKSADQIVVLDEHGQVSQLGTHSELSDVPGIYRHFWQQRKAASGWKISSGRD
SIO_010081: I6I68_RS13000
subclass of: SO_0000673
so part of: I6I68_RS13000
location: complement(11423..13195)
location: region:11423-13195:-1
so has part: feature:11423-13195:-1:exon

WP_201829648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11423-13195:-1:exon

I6I68_RS13005
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13005
old locus tag: I6I68_13005
so part of: sequence
location: complement(13188..14936)
location: region:13188-14936:-1
so has part: feature:13188-14936:-1:exon
subclass of: SO_0000010

75011805
type: Gene
SIO_000068: ncbigene

position:13188:-1
position: 13188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14936:-1
position: 14936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13188-14936:-1:exon

I6I68_RS13005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13005
old locus tag: I6I68_13005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013887735.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSELKQSSTESSGTHAPESHGASPEEEARAKLKAGQVALKKLLAPVQTTIYFAQFLALISSILAVAPYVALVALGNALIDGNTDDVASIVKWLLAAFLGQLFFYFLALAITHFADAKLVGINRRRIITAIAKAPLSWFSQTNSGKVRKAVEDDTLTLHTLTAHAPVEKVAAIFTPLALLVYAFILDWRLGLLSIATVPIFLAIQAYSMKDMGTKTAEMDNYLGEVSATAVEFSEGISVVKAFGTVGKAHARYREAAQKFAEFYYEWVRPLLRVSAISESVVAVPVLILINLGVGSLLIAGGYVTVAEVIATTLIALVLPGTIQTVGQMMWSYQLAGNAALRLDEVMTISHVKEGQKSLDASSQDMEVEFHKVSFSYAPDTPVLQDFSAQLNAGTVTALIGPSGSGKSTAATMLARFQDPDSGTITINNVDIRDLTFDSLYRTVAFVLQDPHLLRMSIRENIRLARPEARDEEIWQAAEAAHIAADIRALPAGLDTVVGEDTSLSGGQQQRISIARAIITNAPILILDEATAATDPDCEAEIQAALATLVRGKTVLVIAHKPESIQGADQIICLKPMKDNSHV
SIO_010081: I6I68_RS13005
subclass of: SO_0000673
so part of: I6I68_RS13005
location: complement(13188..14936)
location: region:13188-14936:-1
so has part: feature:13188-14936:-1:exon

WP_201829646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13188-14936:-1:exon

I6I68_RS13010
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13010
old locus tag: I6I68_13010
so part of: sequence
location: complement(14944..16413)
location: region:14944-16413:-1
so has part: feature:14944-16413:-1:exon
subclass of: SO_0000010

75011806
type: Gene
SIO_000068: ncbigene

position:14944:-1
position: 14944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16413:-1
position: 16413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14944-16413:-1:exon

I6I68_RS13010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13010
old locus tag: I6I68_13010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013887736.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MNERSIATSVDAHNVSFTYPLGARPGIQGVSDVSFSVSPGQCLLITGDSGSGKSTVLKLINGLIPHFNPGELLGTITIIKDDQAFTPAEEPLSRAIEFSASVFQNPRTQFFTESVNAELAFGLENLGVDPKEIESRIQSAVELLGINDLRGRRFKELSGGQLQTVACACALVSPGSLVLLDEPTSNLSMESIDILARVLHRLKELGTTIIIADHRLFFLKDIADQVIYLTQGKITRSFRAQEFYALDEPERKQLGLRSLHHVPLPASVPVPPTLANADPQRSGLELSNICFSYGAHEVLNIDHAFFPSGEVTALIGPNGAGKTTLARIICGLASPKRGGSLRLNSKRVGAAARRRAAYMVMQDVGRQLFAATTEEEVTLGLAKKKRDHIDVNEILHRLDLAGMAQRHPQSLSGGQRQRLAIASAQAEQAAIYIFDEPTSGVGWRQLQSISALLRSLAASGAVVIVITHDHEFIQESVTRIIDMTDINKN
SIO_010081: I6I68_RS13010
subclass of: SO_0000673
so part of: I6I68_RS13010
location: complement(14944..16413)
location: region:14944-16413:-1
so has part: feature:14944-16413:-1:exon

WP_201829672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14944-16413:-1:exon

I6I68_RS13015
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13015
old locus tag: I6I68_13015
so part of: sequence
location: complement(16410..17081)
location: region:16410-17081:-1
so has part: feature:16410-17081:-1:exon
subclass of: SO_0000010

75011807
type: Gene
SIO_000068: ncbigene

position:16410:-1
position: 16410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17081:-1
position: 17081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16410-17081:-1:exon

I6I68_RS13015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13015
old locus tag: I6I68_13015
inference: COORDINATES: protein motif:HMM:NF014420.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: energy-coupling factor transporter transmembrane component T
translation: MLLSVLVINAVALSHGHLPTLLISIAFSSIALATVKPHYGLICLFAFTLSYLGYWGLLQLPGSTFFAFSAAIFSWLSRFVISMSIGAFGLLTLTPSTLTSALRDLRLPGWATIPPAVFLRVLPIIVAEAKAIRDAMVLRGLQPGVKSWITQPTQSSAMLIIPLLGAVVRAGDELAASALVRGLGGPARPTTTADLSFKLVDATALAGLGLVVASVWLPTEVHL
SIO_010081: I6I68_RS13015
subclass of: SO_0000673
so part of: I6I68_RS13015
location: complement(16410..17081)
location: region:16410-17081:-1
so has part: feature:16410-17081:-1:exon

WP_236589346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16410-17081:-1:exon

I6I68_RS13020
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13020
old locus tag: I6I68_13020
so part of: sequence
location: complement(17132..17767)
location: region:17132-17767:-1
so has part: feature:17132-17767:-1:exon
subclass of: SO_0000010

75011808
type: Gene
SIO_000068: ncbigene

position:17132:-1
position: 17132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17767:-1
position: 17767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17132-17767:-1:exon

I6I68_RS13020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13020
old locus tag: I6I68_13020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011273117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MptD family putative ECF transporter S component
translation: MTQQSSTPARSTSSSSGATARLNTRDLINAGIFAALYFVITFVSGMIGFAGPQFMFIGWFIAAIANGIVLALYAARTPKMGAFTLVGGINGLAFMLTGHYFWTLLGSIILGFIADLIITKSHLSIAKSFPIAYSVFCVWISMPFIPLILDTDSYYVDIADQMGQEYADAMSDIFQPWTIGVLAICALIVGFIGGKVGVRVSRKHFESAGLL
SIO_010081: I6I68_RS13020
subclass of: SO_0000673
so part of: I6I68_RS13020
location: complement(17132..17767)
location: region:17132-17767:-1
so has part: feature:17132-17767:-1:exon

WP_070420720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17132-17767:-1:exon

I6I68_RS13025
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13025
old locus tag: I6I68_13025
pseudo: true
so part of: sequence
location: <17908..>18072
location: region:17908-18072:1
so has part: feature:17908-18072:1:exon
subclass of: SO_0000010

75011809
type: Gene
SIO_000068: ncbigene

position:17908:1
position: 17908
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:18072:1
position: 18072
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17908-18072:1:exon

I6I68_RS13025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13025
old locus tag: I6I68_13025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011273116.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS481 family transposase
SIO_010081: I6I68_RS13025
subclass of: SO_0000673
so part of: I6I68_RS13025
location: <17908..>18072
location: region:17908-18072:1
so has part: feature:17908-18072:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17908-18072:1:exon

I6I68_RS13030
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13030
old locus tag: I6I68_13030
so part of: sequence
location: complement(18125..19084)
location: region:18125-19084:-1
so has part: feature:18125-19084:-1:exon
subclass of: SO_0000010

75011810
type: Gene
SIO_000068: ncbigene

position:18125:-1
position: 18125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19084:-1
position: 19084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18125-19084:-1:exon

I6I68_RS13030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13030
old locus tag: I6I68_13030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187845.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MQPPHTPDERRAKLEAVKELARQQEHDAAQELLQAQDVGYTSKLFVQALFPYRNPDSNERKITTAEGTISVYSPNGLPYGKYPRLIMAYIITRAVANAGRLKEGKIDNEEARRIPLGHSMSHFLQAIGVTGRGTGGVHGNLSRIREQILRLASSSITAQSDNGVHARGHNTQILEDWNLWFDPRDPNQGSFMESELVLTPQFFRHIAEAPIPIDLNVLRELSKPRAMDLYIWLTVKQYWLHKNNREAYTFTWDMIAANFATKQLNTAVQRRDFRNEIKKAILELTTAWPEAGIEASTDGVTVTKTAPSVQQKAPRPGLD
SIO_010081: I6I68_RS13030
subclass of: SO_0000673
so part of: I6I68_RS13030
location: complement(18125..19084)
location: region:18125-19084:-1
so has part: feature:18125-19084:-1:exon

WP_201829669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18125-19084:-1:exon

I6I68_RS13035
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13035
old locus tag: I6I68_13035
so part of: sequence
location: complement(19463..19726)
location: region:19463-19726:-1
so has part: feature:19463-19726:-1:exon
subclass of: SO_0000010

75011811
type: Gene
SIO_000068: ncbigene

position:19463:-1
position: 19463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19726:-1
position: 19726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19463-19726:-1:exon

I6I68_RS13035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13035
old locus tag: I6I68_13035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018297243.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MKQAPHPSGRVVSVRMPDEIIERLDALCDRTGRSRGFYLKMAITAMLPKLEEFHWNQVAADFEEKTINNLFNQIMLNGLKDESEEQE
SIO_010081: I6I68_RS13035
subclass of: SO_0000673
so part of: I6I68_RS13035
location: complement(19463..19726)
location: region:19463-19726:-1
so has part: feature:19463-19726:-1:exon

WP_086892526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19463-19726:-1:exon

I6I68_RS13040
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13040
old locus tag: I6I68_13040
so part of: sequence
location: 19950..20213
location: region:19950-20213:1
so has part: feature:19950-20213:1:exon
subclass of: SO_0000010

75011812
type: Gene
SIO_000068: ncbigene

position:19950:1
position: 19950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20213:1
position: 20213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19950-20213:1:exon

I6I68_RS13040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13040
old locus tag: I6I68_13040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPAALIAMSVWMLIAQIRRAGLGTGIIRALGRVIAWYFLAFLGVMVGSMADHYERATDETNDSPYSNTYDAAPANPGEYYDPNEQQ
SIO_010081: I6I68_RS13040
subclass of: SO_0000673
so part of: I6I68_RS13040
location: 19950..20213
location: region:19950-20213:1
so has part: feature:19950-20213:1:exon

WP_201829667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19950-20213:1:exon

I6I68_RS13045
type: Gene
subclass of: SO_0000704
RO_0002162: 39791
locus tag: I6I68_RS13045
old locus tag: I6I68_13045
so part of: sequence
location: complement(20244..20618)
location: region:20244-20618:-1
so has part: feature:20244-20618:-1:exon
subclass of: SO_0000010

75011813
type: Gene
SIO_000068: ncbigene

position:20244:-1
position: 20244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20618:-1
position: 20618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20244-20618:-1:exon

I6I68_RS13045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39791
locus tag: I6I68_RS13045
old locus tag: I6I68_13045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005326133.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
translation: MKKRQELRQHLEEEQRKLRDRKKSINSLLSLIDLRDELNEKIGEVSQSIIDLGEAKEFVRELVGVSQRDFNAMLKTAKESSPSVNDSPIEDESHTGDSERQDDDEAASATKGAGGDGDYKKGAQ
SIO_010081: I6I68_RS13045
subclass of: SO_0000673
so part of: I6I68_RS13045
location: complement(20244..20618)
location: region:20244-20618:-1
so has part: feature:20244-20618:-1:exon

WP_236589344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20244-20618:-1:exon