Corynebacterium glucuronolyticum strain FDAARGOS_1111 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (11-JAN-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP068163.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 8.0.0, HGAP v. 4\nGenome Coverage :: 1093.18x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 05:56:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,624\nCDSs (total) :: 2,558\nGenes (coding) :: 2,509\nCDSs (with protein) :: 2,509\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 20 of 49\nPseudo Genes (incomplete) :: 36 of 49\nPseudo Genes (internal stop) :: 11 of 49\nPseudo Genes (multiple problems) :: 17 of 49\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005326132.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010187791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012468097.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558200.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016934421.1
COORDINATES: similar to AA sequence:RefSeq:WP_018654321.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005326214.1
COORDINATES: similar to AA sequence:RefSeq:WP_005323698.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187836.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612047.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558196.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019311167.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011273121.1
COORDINATES: similar to AA sequence:RefSeq:WP_013887735.1
COORDINATES: similar to AA sequence:RefSeq:WP_013887736.1
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_011273117.1
MptD family putative ECF transporter S component
COORDINATES: similar to AA sequence:RefSeq:WP_011273116.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010187845.1
COORDINATES: similar to AA sequence:RefSeq:WP_018297243.1
ribbon-helix-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005326133.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase