Agelaius phoeniceus isolate BioBank_ID:100140 chromosome 34, Agelaius phoeniceus 1.1, whole genome shotgun sequence.
Agelaius phoeniceus (red-winged blackbird)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelaius.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036747.1.\nAssembly name: Agelaius phoeniceus 1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/12/05. The original whole-genome shotgun project\nhas the accession JAIWQD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Method :: HiFasm v. APR-2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 38.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_020745825.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
atypical kinase COQ8B, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
atypical kinase COQ8B, mitochondrial-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: atypical kinase COQ8B, mitochondrial-like
zinc finger protein 586-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein HaeIII subfamily 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein HaeIII subfamily 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC129132356; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 544-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
zinc finger protein 852-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 345-like
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
C-type lectin domain family 2 member D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
C-type lectin domain family 2 member D-like