Agelaius phoeniceus isolate BioBank_ID:100140 chromosome 34, Agelaius phoeniceus 1.1, whole genome shotgun sequence.
type: Entry
definition: Agelaius phoeniceus isolate BioBank_ID:100140 chromosome 34, Agelaius phoeniceus 1.1, whole genome shotgun sequence.
sequence version: NC_071707.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NC_071707.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA942290
dblink: SAMN19590559
keyword: WGS
keyword: RefSeq
source: Agelaius phoeniceus (red-winged blackbird)
organism: Agelaius phoeniceus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelaius.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM036747.1.\nAssembly name: Agelaius phoeniceus 1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/12/05. The original whole-genome shotgun project\nhas the accession JAIWQD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Method :: HiFasm v. APR-2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 38.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_020745825.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 2852975
topology: linear
so has quality: SO_0000987
location: 1..2852975
location: region:1-2852975:1
RO_0002162: 39638

NC_071707
type: RefSeq
SIO_000068: refseq

PRJNA942290
type: BioProject
SIO_000068: bioproject

SAMN19590559
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2852975:1
position: 2852975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2852975:1:source
so part of: sequence
organism: Agelaius phoeniceus
mol type: genomic DNA
isolate: BioBank_ID:100140
specimen voucher: MCZ:Orn:364415
chromosome: 34
sex: female
tissue type: brain
dev stage: adult
country: USA: Hidalgo County, Texas
collection date: 2018-03-30
collected by: Kathleen Lynch

39638
type: Taxonomy
SIO_000068: taxonomy

LOC129132346
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132346
note: atypical kinase COQ8B, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<82..17804)
location: region:82-17804:-1
so has part: feature:82-17804:-1:exon
subclass of: SO_0000010

129132346
type: Gene
SIO_000068: ncbigene

position:82:-1
position: 82
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17804:-1
position: 17804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82-17804:-1:exon

LOC129132346
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132346
product: atypical kinase COQ8B, mitochondrial-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_054651424.1
SIO_010081: LOC129132346
subclass of: SO_0000673
so part of: LOC129132346
location: complement(join(<82..147,1530..1636,2862..3003,5968..6062,8471..8552,9315..9455,12324..12409,14097..14201,14990..15067,16214..16280,16864..17804))
location: region:82-17804:-1
so has part: feature:16864-17804:-1:exon
so has part: feature:16214-16280:-1:exon
so has part: feature:14990-15067:-1:exon
so has part: feature:14097-14201:-1:exon
so has part: feature:12324-12409:-1:exon
so has part: feature:9315-9455:-1:exon
so has part: feature:8471-8552:-1:exon
so has part: feature:5968-6062:-1:exon
so has part: feature:2862-3003:-1:exon
so has part: feature:1530-1636:-1:exon
so has part: feature:82-147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16864-17804:-1:exon

position:16864:-1
position: 16864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16214-16280:-1:exon

position:16214:-1
position: 16214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16280:-1
position: 16280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14990-15067:-1:exon

position:14990:-1
position: 14990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15067:-1
position: 15067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14097-14201:-1:exon

position:14097:-1
position: 14097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14201:-1
position: 14201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12324-12409:-1:exon

position:12324:-1
position: 12324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12409:-1
position: 12409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9315-9455:-1:exon

position:9315:-1
position: 9315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9455:-1
position: 9455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8471-8552:-1:exon

position:8471:-1
position: 8471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8552:-1
position: 8552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5968-6062:-1:exon

position:5968:-1
position: 5968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6062:-1
position: 6062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2862-3003:-1:exon

position:2862:-1
position: 2862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3003:-1
position: 3003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1530-1636:-1:exon

position:1530:-1
position: 1530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1636:-1
position: 1636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:82-147:-1:exon

position:147:-1
position: 147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129132346
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132346
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: atypical kinase COQ8B, mitochondrial-like
translation: MLLLSRGSPRALHGSGGALGGLGRDPPKNGDPPKNGDPPKSSRDPPQNQVSGWGRGRPVPVGRARRAANMAGLALDLGLGALAEAARTRLRGQERRQVPAWALSEGSAQRLVAVLSRARGAALKVGQLLSMADSELLPPQLQRILARLRQSAEPMPGWQSRAVLDAELGRGWREQLQEFQEVPVAAASLGQVHRGRLRSGADVAIKVQYPGVALSIGSDVENLLTLLSLSPGLPKGLFAAPALRALQRELELECDYEREAESARKFRSLLGSDRFFRVPAVVPALSARRVLCTEWGRGEPLERCRSLPQERRDRICTELLRLCXQELFQFRFMQTDPNWANFLYDSDSHQVTLLDFGACRSFEKEFTDLYIE
SIO_010081: LOC129132346
subclass of: SO_0000673
so part of: LOC129132346
location: complement(join(<82..147,1530..1636,2862..3003,5968..6062,8471..8552,9315..9455,12324..12409,14097..14201,14990..15067,16214..16280,16864..17010))
location: region:82-17010:-1
so has part: feature:16864-17010:-1:exon
so has part: feature:16214-16280:-1:exon
so has part: feature:14990-15067:-1:exon
so has part: feature:14097-14201:-1:exon
so has part: feature:12324-12409:-1:exon
so has part: feature:9315-9455:-1:exon
so has part: feature:8471-8552:-1:exon
so has part: feature:5968-6062:-1:exon
so has part: feature:2862-3003:-1:exon
so has part: feature:1530-1636:-1:exon
so has part: feature:82-147:-1:exon

XP_054507399.1
type: Protein
SIO_000068: ncbiprotein

position:17010:-1
position: 17010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16864-17010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16214-16280:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14990-15067:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14097-14201:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12324-12409:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9315-9455:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8471-8552:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5968-6062:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2862-3003:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1530-1636:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:82-147:-1:exon

LOC129132347
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132347
note: zinc finger protein 586-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 26023..26804
location: region:26023-26804:1
so has part: feature:26023-26804:1:exon
subclass of: SO_0000010

129132347
type: Gene
SIO_000068: ncbigene

position:26023:1
position: 26023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26804:1
position: 26804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26023-26804:1:exon

LOC129132347
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132347
product: zinc finger protein 586-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
transcript id: XM_054651425.1
SIO_010081: LOC129132347
subclass of: SO_0000673
so part of: LOC129132347
location: join(26023..26033,26154..26804)
location: region:26023-26804:1
so has part: feature:26023-26033:1:exon
so has part: feature:26154-26804:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26023-26033:1:exon

position:26033:1
position: 26033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26154-26804:1:exon

position:26154:1
position: 26154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129132347
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132347
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 586-like
translation: MAGMWNSELIKHQRTHTGEKPCECGECGKTFSHCSSLIKHQRSHTGERPYECSECGKSFQTSSYLLLHYQSHTEERPFQCPDCGKGFKHNSHLLTHRHIHTGERPYECDKCRKRFLNSSNLLLHYRIHTEERPFRCPDCGKRFKHNSHLIIHQRIHTGERPYECPQCGKSFSISSHLTQHQRRHR
SIO_010081: LOC129132347
subclass of: SO_0000673
so part of: LOC129132347
location: join(26023..26033,26154..26700)
location: region:26023-26700:1
so has part: feature:26023-26033:1:exon
so has part: feature:26154-26700:1:exon

XP_054507400.1
type: Protein
SIO_000068: ncbiprotein

position:26700:1
position: 26700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26023-26033:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26154-26700:1:exon

LOC129132348
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132348
note: proline-rich protein HaeIII subfamily 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 38471..40544
location: region:38471-40544:1
so has part: feature:38471-40544:1:exon
subclass of: SO_0000010

129132348
type: Gene
SIO_000068: ncbigene

position:38471:1
position: 38471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40544:1
position: 40544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38471-40544:1:exon

LOC129132348
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132348
product: proline-rich protein HaeIII subfamily 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_054651426.1
SIO_010081: LOC129132348
subclass of: SO_0000673
so part of: LOC129132348
location: join(38471..38600,38819..39627,40536..40544)
location: region:38471-40544:1
so has part: feature:38471-38600:1:exon
so has part: feature:38819-39627:1:exon
so has part: feature:40536-40544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38471-38600:1:exon

position:38600:1
position: 38600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:38819-39627:1:exon

position:38819:1
position: 38819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39627:1
position: 39627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:40536-40544:1:exon

position:40536:1
position: 40536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129132348
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132348
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein HaeIII subfamily 1-like
translation: MLPGPQAQQGQKTKIAWEPGQHHSALGPPQHRQSQRSPPRDPAAPAGGAPADAGTVLARKSGAGQDETGMGSPAPDTGEGRDAERDAVRAAASLRDGTREPGKPPMRVRPKPQDCPAGTAPTEQRGMGCPPTGAGPDRTPTDAPPPGASTDCARSAGCAGPGAGDILPPGASTDCACPAGCAGPGTGEVAPPAEEPGLEVGDPAPAVARGNFVETPQFGHQVVTEPDSSRGRGWPSRTGKAQRKGNPSPTPPPTPGEAGRGRPAESTEPTETHGAPPPSTPSGGGEGDSTSDKNSNSPSSTSETEELPWELRGIS
SIO_010081: LOC129132348
subclass of: SO_0000673
so part of: LOC129132348
location: join(38471..38600,38819..39627,40536..40544)
location: region:38471-40544:1
so has part: feature:38471-38600:1:exon
so has part: feature:38819-39627:1:exon
so has part: feature:40536-40544:1:exon

XP_054507401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38471-38600:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:38819-39627:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:40536-40544:1:exon

LOC129132349
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132349
note: zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(79800..99651)
location: region:79800-99651:-1
so has part: feature:79800-99651:-1:exon

129132349
type: Gene
SIO_000068: ncbigene

position:79800:-1
position: 79800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99651:-1
position: 99651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79800-99651:-1:exon

LOC129132349
type: Exon
subclass of: SO_0000147
RO_0002162: 39638
gene: LOC129132349
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC129132349
subclass of: SO_0000673
so part of: LOC129132349
location: complement(79800..81113)
location: region:79800-81113:-1
so has part: feature:79800-81113:-1:exon

position:81113:-1
position: 81113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79800-81113:-1:exon

LOC129132356
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132356
note: uncharacterized LOC129132356; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(90167..92300)
location: region:90167-92300:-1
so has part: feature:90167-92300:-1:exon
subclass of: SO_0000011

129132356
type: Gene
SIO_000068: ncbigene

position:90167:-1
position: 90167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92300:-1
position: 92300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90167-92300:-1:exon

LOC129132356
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 39638
nc RNA class: lncRNA
gene: LOC129132356
product: uncharacterized LOC129132356
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008535786.1
SIO_010081: LOC129132356
subclass of: SO_0000673
so part of: LOC129132356
location: complement(join(90167..90506,92138..92300))
location: region:90167-92300:-1
so has part: feature:92138-92300:-1:exon
so has part: feature:90167-90506:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:92138-92300:-1:exon

position:92138:-1
position: 92138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:90167-90506:-1:exon

position:90506:-1
position: 90506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129132349
type: Exon
subclass of: SO_0000147
RO_0002162: 39638
gene: LOC129132349
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC129132349
subclass of: SO_0000673
so part of: LOC129132349
location: complement(92939..93678)
location: region:92939-93678:-1
so has part: feature:92939-93678:-1:exon

position:92939:-1
position: 92939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93678:-1
position: 93678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92939-93678:-1:exon

LOC129132349
type: Exon
subclass of: SO_0000147
RO_0002162: 39638
gene: LOC129132349
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC129132349
subclass of: SO_0000673
so part of: LOC129132349
location: complement(93838..93904)
location: region:93838-93904:-1
so has part: feature:93838-93904:-1:exon

position:93838:-1
position: 93838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93904:-1
position: 93904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93838-93904:-1:exon

LOC129132349
type: Exon
subclass of: SO_0000147
RO_0002162: 39638
gene: LOC129132349
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC129132349
subclass of: SO_0000673
so part of: LOC129132349
location: complement(94792..94823)
location: region:94792-94823:-1
so has part: feature:94792-94823:-1:exon

position:94792:-1
position: 94792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94823:-1
position: 94823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94792-94823:-1:exon

LOC129132349
type: Exon
subclass of: SO_0000147
RO_0002162: 39638
gene: LOC129132349
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC129132349
subclass of: SO_0000673
so part of: LOC129132349
location: complement(97266..99061)
location: region:97266-99061:-1
so has part: feature:97266-99061:-1:exon

position:97266:-1
position: 97266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99061:-1
position: 99061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97266-99061:-1:exon

LOC129132349
type: Exon
subclass of: SO_0000147
RO_0002162: 39638
gene: LOC129132349
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC129132349
subclass of: SO_0000673
so part of: LOC129132349
location: complement(99526..99651)
location: region:99526-99651:-1
so has part: feature:99526-99651:-1:exon

position:99526:-1
position: 99526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99526-99651:-1:exon

LOC129132354
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132354
note: zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(102233..105063)
location: region:102233-105063:-1
so has part: feature:102233-105063:-1:exon
subclass of: SO_0000010

129132354
type: Gene
SIO_000068: ncbigene

position:102233:-1
position: 102233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105063:-1
position: 105063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102233-105063:-1:exon

LOC129132354
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132354
product: zinc finger protein 436-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_054651430.1
SIO_010081: LOC129132354
subclass of: SO_0000673
so part of: LOC129132354
location: complement(join(102233..103530,104243..104307,104965..105063))
location: region:102233-105063:-1
so has part: feature:104965-105063:-1:exon
so has part: feature:104243-104307:-1:exon
so has part: feature:102233-103530:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104965-105063:-1:exon

position:104965:-1
position: 104965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:104243-104307:-1:exon

position:104243:-1
position: 104243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:104307:-1
position: 104307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:102233-103530:-1:exon

position:103530:-1
position: 103530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129132354
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132354
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 436-like
translation: MLQGTEAEQELSMESREDKCPQQNLVEEAVLSGSMAQEANGEEKPRRCHTRRGCKRRWRGCEGERGSLGREGGRRWSQSSELVLHEQLHDGEKPHKCGECGKSFRWNSHLILHQRTHTGERPYECGECGKSFSKSSSLISHQRIHTGERPYECSKCGKGFQTSSRLLQHYQSHTEERPFQCPDCGKGFRHNSTLIKHRRIHTGERPYECDKCRKSFQTSSHLLQHYWIHREERPFQCPDCGKGFKRNCTLITHRRIHTGERPYECPQCGKSFSSSSHLTKHQRRHR
SIO_010081: LOC129132354
subclass of: SO_0000673
so part of: LOC129132354
location: complement(join(102692..103530,104243..104264))
location: region:102692-104264:-1
so has part: feature:104243-104264:-1:exon
so has part: feature:102692-103530:-1:exon

XP_054507405.1
type: Protein
SIO_000068: ncbiprotein

position:102692:-1
position: 102692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:104264:-1
position: 104264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104243-104264:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:102692-103530:-1:exon

LOC129132355
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132355
note: zinc finger protein 544-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 129317..129927
location: region:129317-129927:1
so has part: feature:129317-129927:1:exon
subclass of: SO_0000010

129132355
type: Gene
SIO_000068: ncbigene

position:129317:1
position: 129317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129927:1
position: 129927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129317-129927:1:exon

LOC129132355
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132355
product: zinc finger protein 544-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_054651431.1
SIO_010081: LOC129132355
subclass of: SO_0000673
so part of: LOC129132355
location: 129317..129927
location: region:129317-129927:1
so has part: feature:129317-129927:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129317-129927:1:exon

LOC129132355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132355
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 544-like
translation: MAQEANGEEKPWRCHTRRGCKRRWRGCEGERTSLGREGDRRWSQSSELVLYEQLHDGEKPHTCVECGKSFRWNSHLIVHQRTHTGEWPYECGECGKSFRQHRCLIMHQKIHTGERPYECSKCAKRFQTSSNLLRHYQIHREERPFQCPDCGKGFRHNSHLVTHQRIHTGERPYECPQCGKSFSQSSNLTKHQRRHR
SIO_010081: LOC129132355
subclass of: SO_0000673
so part of: LOC129132355
location: 129337..129927
location: region:129337-129927:1
so has part: feature:129337-129927:1:exon

XP_054507406.1
type: Protein
SIO_000068: ncbiprotein

position:129337:1
position: 129337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129337-129927:1:exon

LOC129132350
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132350
note: zinc finger protein 852-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 169907..170393
location: region:169907-170393:1
so has part: feature:169907-170393:1:exon
subclass of: SO_0000010

129132350
type: Gene
SIO_000068: ncbigene

position:169907:1
position: 169907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170393:1
position: 170393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169907-170393:1:exon

LOC129132350
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132350
product: zinc finger protein 852-like
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_054651427.1
SIO_010081: LOC129132350
subclass of: SO_0000673
so part of: LOC129132350
location: 169907..170393
location: region:169907-170393:1
so has part: feature:169907-170393:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:169907-170393:1:exon

LOC129132350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132350
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 852-like
translation: MESREDKCPRQNLVAEAVLSGSTAQEANGEEKPRRCRTRRGCKRRWRGCEGERGSQGREGSRRWSQSSELVLHEQLHDGEKPHTCVECGKSFRWNSDLIKHQRTNTGEKPYESGQCGKSFSSCSHFTQHQGRHR
SIO_010081: LOC129132350
subclass of: SO_0000673
so part of: LOC129132350
location: 169989..170393
location: region:169989-170393:1
so has part: feature:169989-170393:1:exon

XP_054507402.1
type: Protein
SIO_000068: ncbiprotein

position:169989:1
position: 169989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169989-170393:1:exon

LOC129132351
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132351
note: zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(184418..260730)
location: region:184418-260730:-1
so has part: feature:184418-260730:-1:exon
subclass of: SO_0000010

129132351
type: Gene
SIO_000068: ncbigene

position:184418:-1
position: 184418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260730:-1
position: 260730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184418-260730:-1:exon

LOC129132351
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132351
product: zinc finger protein 345-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
transcript id: XM_054651428.1
SIO_010081: LOC129132351
subclass of: SO_0000673
so part of: LOC129132351
location: complement(join(184418..185198,258775..259327,259400..259731,260611..260730))
location: region:184418-260730:-1
so has part: feature:260611-260730:-1:exon
so has part: feature:259400-259731:-1:exon
so has part: feature:258775-259327:-1:exon
so has part: feature:184418-185198:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260611-260730:-1:exon

position:260611:-1
position: 260611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:259400-259731:-1:exon

position:259400:-1
position: 259400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259731:-1
position: 259731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:258775-259327:-1:exon

position:258775:-1
position: 258775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259327:-1
position: 259327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:184418-185198:-1:exon

position:185198:-1
position: 185198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129132351
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132351
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger protein 345-like
translation: MKKSKAERKRPLGGTSGGGGGGCRQRQSGGAEPCVPQEPKSQSSELVLHEQLHDGERPHTCLECGKSVSRSPSLIRHQVIHAGEKPYECGECGKSFSQSSALNSHQRTHSGERPYACAECGKGFRWSSNLIKHQRIHDGEWPYECDQCRKRQGFRQNSHLVMHRQIHNGERPHECEECGKSFSRSSTLIRLQRTHTGERPYECGECGKSFRQTANLIQRRRIHTGKRPHKYGKCGKSFSQHSYLIRHQKIHTGERPYECDKCRKRFKTCSCLLKHYQIHREESPFCCPDCGKGFKQNCILITHQRIHTRERPYECEEYGKSFSQRSHLYKHQRSHDGEKPYKCLECEKSFRWRSHLLCHQMIHTGEWPYECGDCGKGFGYSSNLIIHQHIHTREWPYECEECGKRLXSQSCSLICHQMIHTGERPYKCGECGMSFRWCCDLIPHQMIHTGQRPYECGECGKSFSQRTQLISHQCIHTRERPYECPACQKRFHTSSDLLKHQRIHSEERPFRCPNCSKAFKHNPHLVRHQLIHTGERPYKCPQLLQELSLDQTPTEAPLREPCECPDCEKSFMHCSNFIPHWRTHIVQNPGDPHSL
SIO_010081: LOC129132351
subclass of: SO_0000673
so part of: LOC129132351
location: complement(join(184418..185198,258775..259327,259400..259731,260611..260730))
location: region:184418-260730:-1
so has part: feature:260611-260730:-1:exon
so has part: feature:259400-259731:-1:exon
so has part: feature:258775-259327:-1:exon
so has part: feature:184418-185198:-1:exon

XP_054507403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:260611-260730:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:259400-259731:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:258775-259327:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184418-185198:-1:exon

LOC129132353
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132353
note: zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 197027..199373
location: region:197027-199373:1
so has part: feature:197027-199373:1:exon
subclass of: SO_0000010

129132353
type: Gene
SIO_000068: ncbigene

position:197027:1
position: 197027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199373:1
position: 199373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197027-199373:1:exon

LOC129132353
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132353
product: zinc finger protein 239-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_054651429.1
SIO_010081: LOC129132353
subclass of: SO_0000673
so part of: LOC129132353
location: join(197027..197093,197793..199373)
location: region:197027-199373:1
so has part: feature:197027-197093:1:exon
so has part: feature:197793-199373:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:197027-197093:1:exon

position:197093:1
position: 197093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:197793-199373:1:exon

position:197793:1
position: 197793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129132353
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132353
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MPQDTEAEQELSMESREDKCPRQNLVAEAVLSGSMAQEANAEEKPWKCRTRRGCKRRWRGCEGERASLGREGGRRWSQSSELVLHEQLHDGVKPHTCMECGKSFKWSSDLIKHQRTHTGERPYECDQCRKRFQTSSNLLLHQHTHTEERPFRCPDCGQGFRRNTHLVRHQRIHTGERPHECEECGKSFSRCSSLIRHQRTHTGERPYECGECGKSFRQSSNLIQHRNIHTGERPYQCGECGKSFSQHSYLLCHQKIHTGERPYECDKCKKGFQSSSSLLRHYRIHTEERPFQCPDCGKGFQRNSHLIRHRRIHTGERPYECPQCGKSFSQSSHLTRHQRRHQ
SIO_010081: LOC129132353
subclass of: SO_0000673
so part of: LOC129132353
location: join(197072..197093,197793..198799)
location: region:197072-198799:1
so has part: feature:197072-197093:1:exon
so has part: feature:197793-198799:1:exon

XP_054507404.1
type: Protein
SIO_000068: ncbiprotein

position:197072:1
position: 197072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198799:1
position: 198799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197072-197093:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:197793-198799:1:exon

LOC129132357
type: Gene
subclass of: SO_0000704
RO_0002162: 39638
gene: LOC129132357
note: C-type lectin domain family 2 member D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(319438..322030)
location: region:319438-322030:-1
so has part: feature:319438-322030:-1:exon
subclass of: SO_0000010

129132357
type: Gene
SIO_000068: ncbigene

position:319438:-1
position: 319438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:322030:-1
position: 322030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319438-322030:-1:exon

LOC129132357
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 39638
gene: LOC129132357
product: C-type lectin domain family 2 member D-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_054651433.1
SIO_010081: LOC129132357
subclass of: SO_0000673
so part of: LOC129132357
location: complement(join(319438..319591,319979..320082,320807..320982,321077..321175,321549..321605,322006..322030))
location: region:319438-322030:-1
so has part: feature:322006-322030:-1:exon
so has part: feature:321549-321605:-1:exon
so has part: feature:321077-321175:-1:exon
so has part: feature:320807-320982:-1:exon
so has part: feature:319979-320082:-1:exon
so has part: feature:319438-319591:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:322006-322030:-1:exon

position:322006:-1
position: 322006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:321549-321605:-1:exon

position:321549:-1
position: 321549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321605:-1
position: 321605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:321077-321175:-1:exon

position:321077:-1
position: 321077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321175:-1
position: 321175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:320807-320982:-1:exon

position:320807:-1
position: 320807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320982:-1
position: 320982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:319979-320082:-1:exon

position:319979:-1
position: 319979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320082:-1
position: 320082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:319438-319591:-1:exon

position:319591:-1
position: 319591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129132357
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39638
gene: LOC129132357
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: C-type lectin domain family 2 member D-like
translation: MAEVPCEEGGDSAAVMELLEQRAEGRSNFSHRCTNNRKAIIAVTVLTVVLPLTVTIIMLAAKKDPPCPATALPSCLESGIGFGNKCFYFLEEEVDWEGSQHSCLSRQAHLATIDTREELHFLLRYGNFMEYWVGLWREGSGPWKWLNGSLFNALFDIQGNGHCAYTNSHRISSDRCSETKFSICSHLQRHPSEAQKDTEILNST
SIO_010081: LOC129132357
subclass of: SO_0000673
so part of: LOC129132357
location: complement(join(319438..319591,319979..320082,320807..320982,321077..321175,321549..321605,322006..322030))
location: region:319438-322030:-1
so has part: feature:322006-322030:-1:exon
so has part: feature:321549-321605:-1:exon
so has part: feature:321077-321175:-1:exon
so has part: feature:320807-320982:-1:exon
so has part: feature:319979-320082:-1:exon
so has part: feature:319438-319591:-1:exon

XP_054507408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:322006-322030:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:321549-321605:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:321077-321175:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:320807-320982:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:319979-320082:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:319438-319591:-1:exon