Agelaius phoeniceus isolate BioBank_ID:100140 chromosome 33, Agelaius phoeniceus 1.1, whole genome shotgun sequence.
Agelaius phoeniceus (red-winged blackbird)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelaius.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036746.1.\nAssembly name: Agelaius phoeniceus 1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/12/05. The original whole-genome shotgun project\nhas the accession JAIWQD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Method :: HiFasm v. APR-2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 38.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_020745825.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
CUGBP Elav-like family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
sorting nexin 27; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Fc receptor-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC129132250; Derived by automated computational analysis using gene prediction method: Gnomon.
cilia- and flagella-associated protein 45-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cilia- and flagella-associated protein 45-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cilia- and flagella-associated protein 45-like
chaperonin containing TCP1 subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon.
translocon-associated protein subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon.
translocon-associated protein subunit beta, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
translocon-associated protein subunit beta, transcript variant X1
translocon-associated protein subunit beta
zinc finger and BTB domain containing 7B; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 7B
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 7B
collagen alpha-1(I) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
mothers against decapentaplegic homolog 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
flavin adenine dinucleotide synthetase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
flavin adenine dinucleotide synthetase 1
CDC28 protein kinase regulatory subunit 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC28 protein kinase regulatory subunit 1B, transcript variant X1
CDC28 protein kinase regulatory subunit 1B, transcript variant X2
cyclin-dependent kinases regulatory subunit 1 isoform X2
cyclin-dependent kinases regulatory subunit 1 isoform X1
SHC adaptor protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SHC adaptor protein 1, transcript variant X8
SHC adaptor protein 1, transcript variant X7
SHC adaptor protein 1, transcript variant X6
SHC adaptor protein 1, transcript variant X1
SHC adaptor protein 1, transcript variant X2
SHC adaptor protein 1, transcript variant X3
SHC adaptor protein 1, transcript variant X4
SHC adaptor protein 1, transcript variant X5
pygopus family PHD finger 2; Derived by automated computational analysis using gene prediction method: Gnomon.
pygopus family PHD finger 2, transcript variant X1
pygopus family PHD finger 2, transcript variant X2
pygopus family PHD finger 2, transcript variant X3
PBX homeobox interacting protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-B-cell leukemia transcription factor-interacting protein 1
phosphomevalonate kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium calcium-activated channel subfamily N member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium calcium-activated channel subfamily N member 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
small conductance calcium-activated potassium channel protein 3
adenosine deaminase RNA specific; Derived by automated computational analysis using gene prediction method: Gnomon.
adenosine deaminase RNA specific, transcript variant X2
adenosine deaminase RNA specific, transcript variant X1
double-stranded RNA-specific adenosine deaminase isoform X1
double-stranded RNA-specific adenosine deaminase isoform X2
cholinergic receptor nicotinic beta 2 subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
cholinergic receptor nicotinic beta 2 subunit
neuronal acetylcholine receptor subunit beta-2
ubiquitin conjugating enzyme E2 Q1; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin conjugating enzyme E2 Q1, transcript variant X3
ubiquitin conjugating enzyme E2 Q1, transcript variant X2
ubiquitin conjugating enzyme E2 Q1, transcript variant X1
ubiquitin-conjugating enzyme E2 Q1 isoform X2
ubiquitin-conjugating enzyme E2 Q1 isoform X1
Src homology 2 domain containing E; Derived by automated computational analysis using gene prediction method: Gnomon.
Src homology 2 domain containing E, transcript variant X2
Src homology 2 domain containing E, transcript variant X1
SH2 domain-containing adapter protein E isoform X2
SH2 domain-containing adapter protein E isoform X1
interleukin 6 receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin 6 receptor, transcript variant X2
interleukin 6 receptor, transcript variant X1
interleukin-6 receptor subunit alpha isoform X2
interleukin-6 receptor subunit alpha isoform X1
ATPase phospholipid transporting 8B2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
aquaporin 10; Derived by automated computational analysis using gene prediction method: Gnomon.
HCLS1 associated protein X-1; Derived by automated computational analysis using gene prediction method: Gnomon.
HCLS1 associated protein X-1, transcript variant X1
HCLS1 associated protein X-1, transcript variant X2
ubiquitin associated protein 2 like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin associated protein 2 like, transcript variant X2
ubiquitin associated protein 2 like, transcript variant X4
ubiquitin associated protein 2 like, transcript variant X3
ubiquitin associated protein 2 like, transcript variant X1
ubiquitin-associated protein 2-like isoform X3
ubiquitin-associated protein 2-like isoform X2
ubiquitin-associated protein 2-like isoform X1
chromosome 33 C1orf43 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
chromosome 33 C1orf43 homolog, transcript variant X2
chromosome 33 C1orf43 homolog, transcript variant X1
tropomyosin 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
transmembrane protein 79; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
SMG5 nonsense mediated mRNA decay factor; Derived by automated computational analysis using gene prediction method: Gnomon.
SMG5 nonsense mediated mRNA decay factor, transcript variant X1
SMG5 nonsense mediated mRNA decay factor, transcript variant X2
nonsense-mediated mRNA decay factor SMG5 isoform X1
nonsense-mediated mRNA decay factor SMG5 isoform X2
bone gamma-carboxyglutamate protein; Derived by automated computational analysis using gene prediction method: Gnomon.
bone gamma-carboxyglutamate protein, transcript variant X2
bone gamma-carboxyglutamate protein, transcript variant X1
solute carrier family 25 member 44; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 25 member 44, transcript variant X6
solute carrier family 25 member 44 isoform X3
solute carrier family 25 member 44, transcript variant X5
solute carrier family 25 member 44, transcript variant X4
solute carrier family 25 member 44 isoform X2
solute carrier family 25 member 44, transcript variant X2
solute carrier family 25 member 44, transcript variant X1
solute carrier family 25 member 44, transcript variant X3
solute carrier family 25 member 44 isoform X1
semaphorin 4A; Derived by automated computational analysis using gene prediction method: Gnomon.
lamin A/C; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
mex-3 RNA binding family member A; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: RNA-binding protein MEX3A
ras-related protein Rab-11A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 73 Proteins
RAB25, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon.
RAB25, member RAS oncogene family, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70 Proteins
RAB25, member RAS oncogene family, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins
late endosomal/lysosomal adaptor, MAPK and MTOR activator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
ubiquilin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
G patch domain-containing protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
G patch domain-containing protein 4, transcript variant X1
G patch domain-containing protein 4, transcript variant X2
G patch domain-containing protein 4 isoform X1
G patch domain-containing protein 4 isoform X2
NAD(P)HX epimerase; Derived by automated computational analysis using gene prediction method: Gnomon.
tetratricopeptide repeat domain 24; Derived by automated computational analysis using gene prediction method: Gnomon.
coatomer subunit alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 8 bases in 7 codons; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 8 bases in 7 codons; deleted 6 bases in 5 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: coatomer subunit alpha-like
feather keratin 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 107 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: feather keratin 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 150 Proteins
feather beta keratin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 134 Proteins
feather keratin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 149 Proteins
feather keratin 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
claw keratin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 Proteins
keratin-associated protein 6-5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
small proline-rich protein 2H-like; Derived by automated computational analysis using gene prediction method: Gnomon.
loricrin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
putative small proline-rich protein 5; Derived by automated computational analysis using gene prediction method: Gnomon.
small proline-rich protein 2K-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 9-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
LOW QUALITY PROTEIN: keratin-associated protein 9-1-like
keratin-associated protein 5-5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sericin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 5-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein MRP-126-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
protein S100-A9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
protein S100-A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
protein S100-A14-like; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A13; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A1; Derived by automated computational analysis using gene prediction method: Gnomon.
chromatin target of PRMT1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chromatin target of PRMT1 protein-like, transcript variant X1
chromatin target of PRMT1 protein-like, transcript variant X2
chromatin target of PRMT1 protein-like, transcript variant X3
chromatin target of PRMT1 protein-like isoform X1
chromatin target of PRMT1 protein-like isoform X2
chromatin target of PRMT1 protein-like isoform X3
mothers against decapentaplegic homolog 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 4-like
SNAP associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin enhancer binding factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
natriuretic peptide receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
integrator complex subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132091; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 27 member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
long-chain fatty acid transport protein 3
GATA zinc finger domain containing 2B; Derived by automated computational analysis using gene prediction method: Gnomon.
GATA zinc finger domain containing 2B, transcript variant X2
GATA zinc finger domain containing 2B, transcript variant X1
transcriptional repressor p66-beta isoform X1
transcriptional repressor p66-beta isoform X2
DENN domain containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: DENN domain-containing protein 4B
CREB regulated transcription coactivator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
CREB regulated transcription coactivator 2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
LOW QUALITY PROTEIN: CREB-regulated transcription coactivator 2
solute carrier family 39 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
cAMP responsive element binding protein 3 like 4; Derived by automated computational analysis using gene prediction method: Gnomon.
cAMP responsive element binding protein 3 like 4
cyclic AMP-responsive element-binding protein 3-like protein 4
jumping translocation breakpoint; Derived by automated computational analysis using gene prediction method: Gnomon.
RAB13, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon.
RAB13, member RAS oncogene family, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins
RAB13, member RAS oncogene family, transcript variant X2
ribosomal protein S27; Derived by automated computational analysis using gene prediction method: Gnomon.
cathepsin S-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
Rho/Rac guanine nucleotide exchange factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Rho/Rac guanine nucleotide exchange factor 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
rho guanine nucleotide exchange factor 2 isoform X3
Rho/Rac guanine nucleotide exchange factor 2, transcript variant X2
rho guanine nucleotide exchange factor 2 isoform X2
Rho/Rac guanine nucleotide exchange factor 2, transcript variant X1
rho guanine nucleotide exchange factor 2 isoform X1
ankyrin repeat domain 35; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat domain-containing protein 35
nudix hydrolase 17; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleoside diphosphate-linked moiety X motif 17
semaphorin 6C; Derived by automated computational analysis using gene prediction method: Gnomon.
MLLT11 transcription factor 7 cofactor; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC42 small effector 1; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC42 small effector 1, transcript variant X4
CDC42 small effector 1, transcript variant X3
CDC42 small effector 1, transcript variant X2
CDC42 small effector 1, transcript variant X1
prune exopolyphosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
prune exopolyphosphatase 1, transcript variant X1
prune exopolyphosphatase 1, transcript variant X2
MINDY lysine 48 deubiquitinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase MINDY-1
basic salivary proline-rich protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic salivary proline-rich protein 2-like
ceramide synthase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
ceramide synthase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
ceramide synthase 2, transcript variant X2
SET domain bifurcated histone lysine methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SET domain bifurcated histone lysine methyltransferase 1
histone-lysine N-methyltransferase SETDB1
aryl hydrocarbon receptor nuclear translocator; Derived by automated computational analysis using gene prediction method: Gnomon.
aryl hydrocarbon receptor nuclear translocator, transcript variant X1
aryl hydrocarbon receptor nuclear translocator, transcript variant X2
aryl hydrocarbon receptor nuclear translocator, transcript variant X4
aryl hydrocarbon receptor nuclear translocator, transcript variant X5
aryl hydrocarbon receptor nuclear translocator, transcript variant X6
aryl hydrocarbon receptor nuclear translocator, transcript variant X3
aryl hydrocarbon receptor nuclear translocator, transcript variant X8
aryl hydrocarbon receptor nuclear translocator, transcript variant X9
aryl hydrocarbon receptor nuclear translocator, transcript variant X7
aryl hydrocarbon receptor nuclear translocator, transcript variant X10
aryl hydrocarbon receptor nuclear translocator, transcript variant X11
aryl hydrocarbon receptor nuclear translocator isoform X1
aryl hydrocarbon receptor nuclear translocator isoform X2
aryl hydrocarbon receptor nuclear translocator isoform X4
aryl hydrocarbon receptor nuclear translocator isoform X5
aryl hydrocarbon receptor nuclear translocator isoform X6
aryl hydrocarbon receptor nuclear translocator isoform X3
aryl hydrocarbon receptor nuclear translocator isoform X8
aryl hydrocarbon receptor nuclear translocator isoform X9
aryl hydrocarbon receptor nuclear translocator isoform X7
aryl hydrocarbon receptor nuclear translocator isoform X10
aryl hydrocarbon receptor nuclear translocator isoform X11
cathepsin K; Derived by automated computational analysis using gene prediction method: Gnomon.
extracellular matrix protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
threonyl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
threonyl-tRNA synthetase 2, mitochondrial
regulation of nuclear pre-mRNA domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
regulation of nuclear pre-mRNA domain containing 2, transcript variant X2
regulation of nuclear pre-mRNA domain containing 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
regulation of nuclear pre-mRNA domain containing 2, transcript variant X3
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X2
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X1
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X3
pre-mRNA processing factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
U4/U6 small nuclear ribonucleoprotein Prp3
mitochondrial ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein S21, transcript variant X2
mitochondrial ribosomal protein S21, transcript variant X1
28S ribosomal protein S21, mitochondrial
circadian associated repressor of transcription; Derived by automated computational analysis using gene prediction method: Gnomon.
circadian associated repressor of transcription
circadian-associated transcriptional repressor
carbonic anhydrase 14; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: carbonic anhydrase 14
aph-1 homolog A, gamma-secretase subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
aph-1 homolog A, gamma-secretase subunit
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
LOW QUALITY PROTEIN: gamma-secretase subunit APH-1A
acidic nuclear phosphoprotein 32 family member E; Derived by automated computational analysis using gene prediction method: Gnomon.
acidic nuclear phosphoprotein 32 family member E, transcript variant X2
acidic nuclear phosphoprotein 32 family member E, transcript variant X1
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2
pleckstrin homology domain containing O1; Derived by automated computational analysis using gene prediction method: Gnomon.
pleckstrin homology domain containing O1
pleckstrin homology domain-containing family O member 1
vacuolar protein sorting 45 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
vacuolar protein sorting 45 homolog, transcript variant X1
vacuolar protein sorting 45 homolog, transcript variant X2
vacuolar protein sorting 45 homolog, transcript variant X3
vacuolar protein sorting-associated protein 45 isoform X2
vacuolar protein sorting-associated protein 45 isoform X1
vacuolar protein sorting 45 homolog, transcript variant X4
vacuolar protein sorting-associated protein 45 isoform X3
OTU deubiquitinase 7B; Derived by automated computational analysis using gene prediction method: Gnomon.
OTU deubiquitinase 7B, transcript variant X1
OTU deubiquitinase 7B, transcript variant X3
OTU domain-containing protein 7B isoform X1
OTU domain-containing protein 7B isoform X3
OTU deubiquitinase 7B, transcript variant X2
OTU domain-containing protein 7B isoform X2
myotubularin related protein 11; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
LOW QUALITY PROTEIN: myotubularin-related protein 11
splicing factor 3b subunit 4; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
LOW QUALITY PROTEIN: splicing factor 3B subunit 4
synaptic vesicle glycoprotein 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
bolA family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
bolA family member 1, transcript variant X1
bolA family member 1, transcript variant X2
hemojuvelin BMP co-receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
uncharacterized LOC129132202; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132202, transcript variant X1
uncharacterized LOC129132202, transcript variant X2
thioredoxin interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon.
thioredoxin interacting protein, transcript variant X1
thioredoxin interacting protein, transcript variant X2
thioredoxin-interacting protein isoform X1
thioredoxin-interacting protein isoform X2
RNA polymerase III subunit GL; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
DNA-directed RNA polymerase III subunit RPC7-like
ankyrin repeat domain 34A; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat domain-containing protein 34A
RNA binding motif protein 8A; Derived by automated computational analysis using gene prediction method: Gnomon.
limb and CNS expressed 1 like; Derived by automated computational analysis using gene prediction method: Gnomon.
peroxisomal biogenesis factor 11 beta; Derived by automated computational analysis using gene prediction method: Gnomon.
peroxisomal biogenesis factor 11 beta, transcript variant X1
peroxisomal biogenesis factor 11 beta, transcript variant X2
peroxisomal membrane protein 11B isoform X1
peroxisomal membrane protein 11B isoform X2
integrin subunit alpha 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
ring finger protein 115; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF115
RNA polymerase III subunit C; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA-directed RNA polymerase III subunit RPC3
SH2 domain containing 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
proline rich mitotic checkpoint control factor; Derived by automated computational analysis using gene prediction method: Gnomon.
proline rich mitotic checkpoint control factor, transcript variant X3
proline rich mitotic checkpoint control factor, transcript variant X2
proline rich mitotic checkpoint control factor, transcript variant X1
heparin binding growth factor; Derived by automated computational analysis using gene prediction method: Gnomon.
heparin binding growth factor, transcript variant X2
heparin binding growth factor, transcript variant X1
hepatoma-derived growth factor isoform X2
hepatoma-derived growth factor isoform X1
mitochondrial ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein L24, transcript variant X2
mitochondrial ribosomal protein L24, transcript variant X1
39S ribosomal protein L24, mitochondrial isoform X1
39S ribosomal protein L24, mitochondrial isoform X2
methyltransferase like 25B; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: methyltransferase-like protein 25B
interferon stimulated exonuclease gene 20 like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
interferon stimulated exonuclease gene 20 like 2
interferon-stimulated 20 kDa exonuclease-like 2
cellular retinoic acid binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
cellular retinoic acid binding protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
cellular retinoic acid-binding protein 2
dnaJ homolog subfamily A member 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
dnaJ homolog subfamily A member 1-like, transcript variant X2
dnaJ homolog subfamily A member 1-like, transcript variant X1
dnaJ homolog subfamily A member 1-like isoform X1
dnaJ homolog subfamily A member 1-like isoform X2
nestin; Derived by automated computational analysis using gene prediction method: Gnomon.
brevican; Derived by automated computational analysis using gene prediction method: Gnomon.
hyaluronan and proteoglycan link protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
hyaluronan and proteoglycan link protein 2
Rh family B glycoprotein; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132316; Derived by automated computational analysis using gene prediction method: Gnomon.
myocyte enhancer factor 2D; Derived by automated computational analysis using gene prediction method: Gnomon.
myocyte enhancer factor 2D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
myocyte enhancer factor 2D, transcript variant X1
myocyte-specific enhancer factor 2D isoform X2
myocyte-specific enhancer factor 2D isoform X1
IQ motif containing GTPase activating protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
IQ motif containing GTPase activating protein 3
ras GTPase-activating-like protein IQGAP3
cyclin-A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132102; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A11; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 10-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 10-7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase RNF12-B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase RNF12-B-like
uncharacterized LOC129132106; Derived by automated computational analysis using gene prediction method: Gnomon.
keratinocyte proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scale keratin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type I cytoskeletal 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 157 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 162 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 144 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins
uncharacterized LOC129132127; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A13-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chromatin target of PRMT1 protein; Derived by automated computational analysis using gene prediction method: Gnomon.
chromatin target of PRMT1 protein, transcript variant X1
chromatin target of PRMT1 protein, transcript variant X3
chromatin target of PRMT1 protein, transcript variant X2
chromatin target of PRMT1 protein, transcript variant X4
chromatin target of PRMT1 protein, transcript variant X5
chromatin target of PRMT1 protein, transcript variant X6
chromatin target of PRMT1 protein isoform X5
chromatin target of PRMT1 protein isoform X1
chromatin target of PRMT1 protein isoform X3
chromatin target of PRMT1 protein isoform X2
chromatin target of PRMT1 protein isoform X4
chromatin target of PRMT1 protein isoform X6
SNARE-associated protein Snapin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin enhancer-binding factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
atrial natriuretic peptide receptor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
atrial natriuretic peptide receptor 1-like
long-chain fatty acid transport protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 3-like
transcriptional repressor p66-beta; Derived by automated computational analysis using gene prediction method: Gnomon.
transcriptional repressor p66-beta, transcript variant X2
transcriptional repressor p66-beta, transcript variant X1
platelet endothelial aggregation receptor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
platelet endothelial aggregation receptor 1-like
DC-STAMP domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase DCST1
DC-STAMP domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
ADAM metallopeptidase domain 15; Derived by automated computational analysis using gene prediction method: Gnomon.
disintegrin and metalloproteinase domain-containing protein 15
ephrin A3; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin A4; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin A1; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 50 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
dolichyl-phosphate mannosyltransferase subunit 3, regulatory; Derived by automated computational analysis using gene prediction method: Gnomon.
dolichyl-phosphate mannosyltransferase subunit 3, regulatory
dolichol-phosphate mannosyltransferase subunit 3
keratinocyte associated protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 46; Derived by automated computational analysis using gene prediction method: Gnomon.
thrombospondin 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
metaxin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132266; Derived by automated computational analysis using gene prediction method: Gnomon.
lysosomal acid glucosylceramidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lysosomal acid glucosylceramidase-like, transcript variant X4
lysosomal acid glucosylceramidase-like, transcript variant X3
lysosomal acid glucosylceramidase-like, transcript variant X2
lysosomal acid glucosylceramidase-like, transcript variant X1
lysosomal acid glucosylceramidase-like isoform X3
lysosomal acid glucosylceramidase-like isoform X2
lysosomal acid glucosylceramidase-like isoform X1
lysosomal acid glucosylceramidase-like isoform X4
endosomal transmembrane epsin interactor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
endosomal transmembrane epsin interactor 3
secretory carrier membrane protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
secretory carrier-associated membrane protein 3
CDC like kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC like kinase 2, transcript variant X2
CDC like kinase 2, transcript variant X1
CDC like kinase 2, transcript variant X3
dual specificity protein kinase CLK2 isoform X2
dual specificity protein kinase CLK2 isoform X1
dual specificity protein kinase CLK2 isoform X3
hyperpolarization activated cyclic nucleotide gated potassium channel 3; Derived by automated computational analysis using gene prediction method: Gnomon.
hyperpolarization activated cyclic nucleotide gated potassium channel 3
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
farnesyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
RUN and SH3 domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ASH1 like histone lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
ASH1 like histone lysine methyltransferase
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ASH1L
death associated protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
28S ribosomal protein S29, mitochondrial
misato mitochondrial distribution and morphology regulator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
misato mitochondrial distribution and morphology regulator 1
GON-4-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.