Agelaius phoeniceus isolate BioBank_ID:100140 chromosome 32, Agelaius phoeniceus 1.1, whole genome shotgun sequence.
Agelaius phoeniceus (red-winged blackbird)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelaius.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036745.1.\nAssembly name: Agelaius phoeniceus 1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2022/12/05. The original whole-genome shotgun project\nhas the accession JAIWQD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Method :: HiFasm v. APR-2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 38.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_020745825.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/22/2023\n##Genome-Annotation-Data-END##
synaptic Ras GTPase activating protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptic Ras GTPase activating protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
ras/Rap GTPase-activating protein SynGAP
uncharacterized LOC129132068; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC129131990; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X4
COORDINATES: polyA evidence [ECO:0006239]
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 109 Proteins
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X2
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X3
class I histocompatibility antigen, F10 alpha chain-like isoform X4
class I histocompatibility antigen, F10 alpha chain-like isoform X1
class I histocompatibility antigen, F10 alpha chain-like isoform X2
class I histocompatibility antigen, F10 alpha chain-like isoform X3
flotillin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132059; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132054; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein ZFP2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 243 Proteins
zinc finger protein 208-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 348 Proteins
uncharacterized LOC129132061; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132062; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 135-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132056; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 298 Proteins
uncharacterized LOC129132063; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 198 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 356 Proteins
uncharacterized LOC129132064; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132065; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 170 Proteins
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 295 Proteins
uncharacterized LOC129132066; Derived by automated computational analysis using gene prediction method: Gnomon.
endogenous retrovirus group K member 5 Gag polyprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
endogenous retrovirus group K member 5 Gag polyprotein-like, transcript variant X3
endogenous retrovirus group K member 5 Gag polyprotein-like, transcript variant X1
endogenous retrovirus group K member 5 Gag polyprotein-like, transcript variant X2
endogenous retrovirus group K member 5 Gag polyprotein-like
uncharacterized LOC129132067; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132060; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132058; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 314 Proteins
serine/threonine-protein kinase PAK 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 1-like
zinc finger protein 551-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 186 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 504 Proteins
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X5
class I histocompatibility antigen, F10 alpha chain-like isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 174 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 206 Proteins
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X6
class I histocompatibility antigen, F10 alpha chain-like isoform X6
flotillin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin beta chain; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132031; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
serine/threonine-protein kinase PAK 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 124 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized LOC129131994; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
zinc finger protein 502-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98 Proteins
zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 136 Proteins
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 111 Proteins
zinc finger protein 11-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 148 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 62 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
class I histocompatibility antigen, F10 alpha chain-like
uncharacterized LOC129132057; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein OZF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein OZF-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70 Proteins
zinc finger protein 239-like, transcript variant X2
uncharacterized protein LOC129132030 isoform X2
zinc finger protein 239-like, transcript variant X1
uncharacterized LOC129132052; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129132052, transcript variant X3
uncharacterized LOC129132052, transcript variant X5
uncharacterized LOC129132052, transcript variant X1
uncharacterized LOC129132052, transcript variant X2
uncharacterized LOC129132052, transcript variant X4
zinc finger protein 135-like, transcript variant X1
zinc finger protein 135-like, transcript variant X2
zinc finger protein 135-like, transcript variant X3
zinc finger protein 585B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94 Proteins
zinc finger protein 586-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 586-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 Proteins
gastrula zinc finger protein XlCGF49.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gastrula zinc finger protein XlCGF49.1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 233 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: class II histocompatibility antigen, B-L beta chain-like
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins
LOW QUALITY PROTEIN: zinc finger protein 271-like
uncharacterized LOC129132055; Derived by automated computational analysis using gene prediction method: Gnomon.
N-acetylmuramoyl-L-alanine amidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: N-acetylmuramoyl-L-alanine amidase-like
zinc finger protein 239-like, transcript variant X3