Rhizobium phaseoli strain R650 plasmid pRphaR650c, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
The limits of bacterial species coexistence and the symbiotic plasmid transference in sympatric Rhizobium populations
Submitted (24-NOV-2015) Programa de Genomica Evolutiva, Centro de Ciencias Genomicas - UNAM, Av. Universidad s/n, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP013535.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0; Consed23\nGenome Coverage :: 180x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 00:05:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,453\nCDSs (total) :: 6,389\nGenes (coding) :: 6,200\nCDSs (with protein) :: 6,200\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 189\nCDSs (without protein) :: 189\nPseudo Genes (ambiguous residues) :: 0 of 189\nPseudo Genes (frameshifted) :: 115 of 189\nPseudo Genes (incomplete) :: 121 of 189\nPseudo Genes (internal stop) :: 32 of 189\nPseudo Genes (multiple problems) :: 62 of 189\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Olga Perez Carrascal and Victor Gonzalez Z.
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053284.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007539569.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200234.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486329.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF024758.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02274.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003546056.1
COORDINATES: similar to AA sequence:RefSeq:WP_003546057.1
COORDINATES: similar to AA sequence:RefSeq:WP_005484797.1
COORDINATES: similar to AA sequence:RefSeq:WP_007267782.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590950.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF014869.2
COORDINATES: similar to AA sequence:RefSeq:WP_003532611.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886200.1
COORDINATES: protein motif:HMM:NF021465.2
COORDINATES: similar to AA sequence:RefSeq:WP_018517447.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760201.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590941.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: protein motif:HMM:NF012350.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: similar to AA sequence:RefSeq:WP_011651494.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651495.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017244946.1
COORDINATES: similar to AA sequence:RefSeq:WP_008505193.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011053299.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397608.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674359.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF020920.2
COORDINATES: similar to AA sequence:RefSeq:WP_004674362.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534154.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010033181.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018328800.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004674371.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008534159.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF015415.2
COORDINATES: protein motif:HMM:NF013134.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674376.1
GO:0009374 - biotin binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_008534161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875348.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011971066.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129756.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534165.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012489432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328855.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: similar to AA sequence:RefSeq:WP_012489435.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006200010.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330531.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859771.1
COORDINATES: similar to AA sequence:RefSeq:WP_018445491.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012489446.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018327555.1
COORDINATES: similar to AA sequence:RefSeq:WP_027033250.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489448.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271521.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489450.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053319.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534228.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672583.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247139.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion inner membrane ring lipoprotein SctJ
COORDINATES: similar to AA sequence:RefSeq:WP_011053322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636029.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system stator protein SctL
COORDINATES: similar to AA sequence:RefSeq:WP_004672587.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489459.1
FliM/FliN family flagellar motor switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636018.1
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_015241680.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008534267.1
GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053325.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489463.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0030570 - pectate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008534277.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737415.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691372.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672597.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247142.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008534295.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566648.1
COORDINATES: similar to AA sequence:RefSeq:WP_010031884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675991.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675992.1
tellurite-like stress resistance cysteine protease StiP
COORDINATES: similar to AA sequence:RefSeq:WP_011053330.1
phosphoribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013419362.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668600.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053334.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668604.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053336.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855502.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007537192.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053340.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668619.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004668622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668623.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668626.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004668627.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008534336.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668632.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668634.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004668636.1
COORDINATES: similar to AA sequence:RefSeq:WP_010847473.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014528241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489469.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534360.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737426.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053352.1
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_008534366.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737428.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534368.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673287.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004673289.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737430.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534369.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671533.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671531.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328913.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016737432.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053357.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009987854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489472.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671523.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: similar to AA sequence:RefSeq:WP_012489473.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489474.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_018328889.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737438.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671512.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247153.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671505.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534397.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489479.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_018493252.1
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012760297.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004673403.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446357.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737445.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016735283.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636187.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636185.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489487.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053372.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673420.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489489.1
COORDINATES: similar to AA sequence:RefSeq:WP_009996879.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_016737452.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636165.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636161.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737456.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571619.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967479.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845385.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823649.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003535142.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676096.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_010066437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053387.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012489500.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_004676101.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636139.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053391.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_016737463.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737465.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636126.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737466.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489507.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247165.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636116.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536029.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737469.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007636110.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970797.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010068053.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536033.1
COORDINATES: protein motif:HMM:NF036442.2
COORDINATES: similar to AA sequence:RefSeq:WP_012489515.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017270940.1
COORDINATES: similar to AA sequence:RefSeq:WP_010024976.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680434.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680432.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737474.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680430.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_004680429.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_004680428.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_004680427.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_007636660.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_004680425.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016737476.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004680423.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012489520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_010069402.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_012489523.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489524.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_012489525.1
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_012489526.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536071.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875360.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
carbamoyltransferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018247171.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013897121.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014531025.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536079.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611470.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489536.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489534.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
ISNCY-like element ISRel10 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004674717.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489539.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011654537.1
IS66-like element ISRle3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008536567.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024406.2
COORDINATES: similar to AA sequence:RefSeq:WP_009991126.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672660.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_011053415.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003532774.1
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636855.1
COORDINATES: protein motif:HMM:NF018595.2
COORDINATES: similar to AA sequence:RefSeq:WP_008536557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009905.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017964666.1
COORDINATES: similar to AA sequence:RefSeq:WP_007629624.1
responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004678566.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678547.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004678546.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636873.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536550.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_004678528.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536549.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536548.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247198.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_008536545.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636888.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678511.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671991.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013730.2
COORDINATES: similar to AA sequence:RefSeq:WP_004125955.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671987.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247203.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636760.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803580.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053436.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_020819796.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611357.1
COORDINATES: protein motif:HMM:NF024172.2
COORDINATES: similar to AA sequence:RefSeq:WP_011084489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636915.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247206.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011084944.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737498.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053443.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673819.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489562.1
COORDINATES: similar to AA sequence:RefSeq:WP_014501321.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012489566.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009888.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247185.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247211.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_004679185.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053452.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053454.1
COORDINATES: protein motif:HMM:TIGR01444.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: protein motif:HMM:NF024975.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611958.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996660.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247213.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536489.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737487.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_004125972.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489576.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636999.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004679213.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010025697.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004674430.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674428.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_003568511.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003581460.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737107.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053474.1
COORDINATES: protein motif:HMM:NF017072.2
COORDINATES: similar to AA sequence:RefSeq:WP_004677870.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991124.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539040.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556676.1
COORDINATES: similar to AA sequence:RefSeq:WP_004679687.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098906.1
COORDINATES: similar to AA sequence:RefSeq:WP_010034735.1
IS3-like element ISRel21 family transposase
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
COORDINATES: similar to AA sequence:RefSeq:WP_046205714.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611442.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677776.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737344.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004677772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053481.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004677768.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677763.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677747.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677746.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489593.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558111.1
COORDINATES: similar to AA sequence:RefSeq:WP_008533948.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004676279.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009820057.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612405.1
COORDINATES: similar to AA sequence:RefSeq:WP_017990650.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635973.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636849.1
nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018247121.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006206776.1
GO:0015267 - channel activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672710.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672713.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672714.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672715.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053499.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019845.2
medium chain dehydrogenase/reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: protein motif:HMM:NF012967.2
COORDINATES: similar to AA sequence:RefSeq:WP_007538730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672729.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672730.1