Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
The limits of bacterial species coexistence and the symbiotic plasmid transference in sympatric Rhizobium populations
Submitted (24-NOV-2015) Programa de Genomica Evolutiva, Centro de Ciencias Genomicas - UNAM, Av. Universidad s/n, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP013533.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0; Consed23\nGenome Coverage :: 180x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 00:05:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,453\nCDSs (total) :: 6,389\nGenes (coding) :: 6,200\nCDSs (with protein) :: 6,200\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 189\nCDSs (without protein) :: 189\nPseudo Genes (ambiguous residues) :: 0 of 189\nPseudo Genes (frameshifted) :: 115 of 189\nPseudo Genes (incomplete) :: 121 of 189\nPseudo Genes (internal stop) :: 32 of 189\nPseudo Genes (multiple problems) :: 62 of 189\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Olga Perez Carrascal and Victor Gonzalez Z.
COORDINATES: similar to AA sequence:RefSeq:WP_008530136.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008530137.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008523062.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011427631.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047767.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427633.1
COORDINATES: similar to AA sequence:RefSeq:WP_007698102.1
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997715.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015342932.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654265.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736945.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004676151.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958302.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634964.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654268.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071749.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736938.1
GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IEA]
GO:0006751 - glutathione catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556326.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427645.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591588.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016736934.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634950.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483087.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992528.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446106.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676663.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071762.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572458.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556340.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992524.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004676674.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018494033.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047996.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591637.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676678.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016228.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018494028.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004676681.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591644.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071775.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446100.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_020047979.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556356.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634889.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736906.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676697.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018071799.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003555614.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577549.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016736902.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736901.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007634873.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591660.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_004676711.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736897.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517088.1
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004675859.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020665216.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016736886.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483041.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427683.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007634835.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555452.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018493990.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538619.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958363.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:YP_002517625.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004675898.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572394.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736874.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591698.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092549.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047940.1
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018071836.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007634806.1
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427700.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018444536.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569295.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677566.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569266.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480345.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677559.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003578197.1
COORDINATES: similar to AA sequence:RefSeq:WP_018447343.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967659.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967658.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967657.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_011428163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018241344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008522644.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677542.1
type II and III secretion system protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003578181.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967651.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569290.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004677535.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736847.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004677533.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677531.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004677529.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444734.1
COORDINATES: similar to AA sequence:RefSeq:WP_007627774.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677524.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677521.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677520.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572568.1
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: similar to AA sequence:RefSeq:WP_007635059.1
sn-glycerol-3-phosphate ABC transporter permease UgpA
COORDINATES: similar to AA sequence:RefSeq:WP_018480638.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter permease UgpE
COORDINATES: similar to AA sequence:RefSeq:WP_011649640.1
sn-glycerol-3-phosphate import ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_003562579.1
glycerophosphoryl diester phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_011427710.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016736833.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047907.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736831.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736830.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427715.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427717.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003577851.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011427719.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018480414.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677515.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480416.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755191.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428210.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594692.1
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_008357111.1
COORDINATES: similar to AA sequence:RefSeq:WP_008225024.1
COORDINATES: similar to AA sequence:RefSeq:WP_003563656.1
GH32 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007800779.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800781.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677493.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559885.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677489.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736809.1
COORDINATES: similar to AA sequence:RefSeq:WP_014532069.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674649.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562388.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674651.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020046913.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444720.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480358.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736802.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674430.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736800.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012759222.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011428795.1
COORDINATES: similar to AA sequence:RefSeq:WP_007626673.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592788.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011428801.1
GO:0051082 - unfolded protein binding [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_011654245.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017965701.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_003568511.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
GO:0003674 - molecular_function [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003581460.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018494560.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737107.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011428814.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737105.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737104.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737103.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590863.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428817.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737100.1
cytochrome C oxidase subunit IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002966338.1
COORDINATES: similar to AA sequence:RefSeq:WP_007608449.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_016737097.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737096.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053474.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_014990078.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737093.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428825.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428826.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428827.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967660.1
GO:0050421 - nitrite reductase (NO-forming) activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737088.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011970955.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737086.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737085.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568473.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674654.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635604.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012560013.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524000.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595542.1
COORDINATES: similar to AA sequence:RefSeq:WP_008505193.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427733.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737076.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737075.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737074.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016737073.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737072.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003579306.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246456.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674662.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737070.1
COORDINATES: similar to AA sequence:RefSeq:WP_010001356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674664.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011427743.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427744.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007812009.1
GO:0018467 - formaldehyde dehydrogenase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
formaldehyde dehydrogenase, glutathione-independent
COORDINATES: similar to AA sequence:RefSeq:WP_018246401.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555563.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427749.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427750.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674672.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496290.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674674.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538494.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654404.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800110.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047867.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529974.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047865.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342956.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012555572.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538486.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737051.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591805.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538478.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529987.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572268.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047854.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997606.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577779.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427775.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958202.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555592.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538447.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654429.1
sodium:solute symporter family monocarboxylate transporter
COORDINATES: similar to AA sequence:RefSeq:WP_018517713.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555594.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654431.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591847.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017968692.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670794.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654435.1
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018070680.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427789.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246862.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577742.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755578.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245712.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018246864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427794.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530030.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968703.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538433.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997593.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737020.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737019.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538424.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449072.1
COORDINATES: similar to AA sequence:RefSeq:WP_002965659.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760647.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007634408.1
COORDINATES: similar to AA sequence:RefSeq:WP_003519616.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737012.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958229.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237067.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237066.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329384.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329385.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958234.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958235.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555604.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_003555460.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577717.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018449058.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427810.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577711.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
nitrogen assimilation transcriptional regulator NAC
COORDINATES: similar to AA sequence:RefSeq:WP_003572205.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003591879.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047819.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007752136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555610.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670892.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012555612.1
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016736990.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047812.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486055.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736987.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555441.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538368.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572169.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538358.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760628.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654469.1
aldo/keto reductase family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018449039.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670925.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_003572153.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572152.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427835.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555203.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736974.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968902.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736972.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427836.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016736970.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670954.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015242730.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016736967.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670960.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538341.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634325.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047783.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736962.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496354.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047778.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004676166.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736958.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071683.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427859.1