Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter.
Whole genome sequence of the plant growth-promoting bacterium Phytobacter diazotrophicus (Strain UAEU22) isolated from the date palm rhizosphere soil
Submitted (13-APR-2020) Biology, Khalifa Center for Genetic Engineering and Biotechnology, UAE University, Al-Ain United Arab Emirates, Al-Ain 15551, United Arab Emirates
REFSEQ INFORMATION: The reference sequence is identical to\nCP051549.1.\nBacteria and source DNA available from Biology departmant, UAE\nUniversity.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-DEC-2019\nAssembly Method :: SPAdes v. 3.11.1\nAssembly Name :: Hybrid assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/15/2022 05:37:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,242\nCDSs (total) :: 5,132\nGenes (coding) :: 5,034\nCDSs (with protein) :: 5,034\nGenes (RNA) :: 110\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 9\nPseudo Genes (total) :: 98\nCDSs (without protein) :: 98\nPseudo Genes (ambiguous residues) :: 0 of 98\nPseudo Genes (frameshifted) :: 43 of 98\nPseudo Genes (incomplete) :: 67 of 98\nPseudo Genes (internal stop) :: 15 of 98\nPseudo Genes (multiple problems) :: 25 of 98\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_012540237.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family plasmid partition protein
COORDINATES: similar to AA sequence:RefSeq:NP_052640.1
COORDINATES: similar to AA sequence:RefSeq:WP_017900946.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558153.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000647571.1
COORDINATES: similar to AA sequence:RefSeq:WP_000790485.1
COORDINATES: similar to AA sequence:RefSeq:WP_004385431.1
copper/silver sensor histidine kinase SilS
COORDINATES: similar to AA sequence:RefSeq:WP_001572351.1
copper/silver response regulator transcription factor SilR
COORDINATES: similar to AA sequence:RefSeq:WP_001572989.1
Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC
COORDINATES: similar to AA sequence:RefSeq:WP_009654303.1
COORDINATES: similar to AA sequence:RefSeq:WP_017146627.1
Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB
COORDINATES: similar to AA sequence:RefSeq:WP_011711636.1
Cu(+)/Ag(+) efflux RND transporter permease subunit SilA
COORDINATES: similar to AA sequence:RefSeq:WP_002436620.1
COORDINATES: similar to AA sequence:RefSeq:WP_032489447.1
COORDINATES: similar to AA sequence:RefSeq:WP_000843499.1
COORDINATES: similar to AA sequence:RefSeq:WP_002436617.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004388333.1
COORDINATES: similar to AA sequence:RefSeq:WP_001480786.1
COORDINATES: similar to AA sequence:RefSeq:WP_001378118.1
copper resistance outer membrane transporter PcoB
COORDINATES: similar to AA sequence:RefSeq:WP_004098941.1
copper resistance system metallochaperone PcoC
COORDINATES: similar to AA sequence:RefSeq:WP_004098940.1
copper resistance inner membrane protein PcoD
transcriptional regulator responding to pcoS and pcoS*
COORDINATES: similar to AA sequence:RefSeq:WP_020239536.1
copper response regulator transcription factor PcoR
COORDINATES: similar to AA sequence:RefSeq:WP_001211179.1
copper resistance membrane spanning protein PcoS
COORDINATES: similar to AA sequence:RefSeq:WP_000723069.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152086.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011906492.1
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:YP_005229629.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007755460.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013097093.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_000065799.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:NP_312401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013749489.1
COORDINATES: similar to AA sequence:RefSeq:WP_013572668.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020192026.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206572.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004878189.1
COORDINATES: protein motif:HMM:NF025079.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001963874.1
COORDINATES: similar to AA sequence:RefSeq:WP_001963873.1
COORDINATES: similar to AA sequence:RefSeq:WP_003783761.1
COORDINATES: similar to AA sequence:RefSeq:WP_008739675.1
COORDINATES: similar to AA sequence:RefSeq:WP_008739676.1
COORDINATES: similar to AA sequence:RefSeq:WP_008739677.1
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_008739678.1
COORDINATES: similar to AA sequence:RefSeq:WP_001963865.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001963860.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220915.1
type I restriction endonuclease subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_076611384.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611553.1
COORDINATES: similar to AA sequence:RefSeq:WP_000591081.1
COORDINATES: similar to AA sequence:RefSeq:WP_004193079.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014883684.1
COORDINATES: similar to AA sequence:RefSeq:WP_002435737.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF026941.2
COORDINATES: similar to AA sequence:RefSeq:WP_006120918.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
Tn3-like element ISPa38 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
IS6-like element IS6100 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
sulfonamide-resistant dihydropteroate synthase Sul1
COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
quaternary ammonium compound efflux SMR transporter QacE delta 1
COORDINATES: similar to AA sequence:RefSeq:WP_001749984.1
AadA family aminoglycoside 3''-O-nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1
COORDINATES: similar to AA sequence:RefSeq:WP_001293886.1
COORDINATES: similar to AA sequence:RefSeq:WP_003465043.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809177.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100856.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100853.1
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: protein motif:HMM:NF018726.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_008324958.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017337.2
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_016495607.1
COORDINATES: protein motif:HMM:NF017105.2
COORDINATES: similar to AA sequence:RefSeq:WP_013200001.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001234456.1
COORDINATES: similar to AA sequence:RefSeq:WP_009651962.1
COORDINATES: protein motif:HMM:NF036604.2
COORDINATES: protein motif:HMM:NF007279.0
COORDINATES: similar to AA sequence:RefSeq:WP_010308590.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572075.1
COORDINATES: similar to AA sequence:RefSeq:WP_001562885.1
COORDINATES: protein motif:HMM:NF018636.2
COORDINATES: similar to AA sequence:RefSeq:WP_007853292.1
COORDINATES: protein motif:HMM:NF022241.2
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004152715.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.