Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Genomics of Clostridium taeniosporum, an organism which forms endospores with ribbon-like appendages
Submitted (11-JUL-2017) Molecular Biosciences, University of Texas, 2506 Speedway Stop A5000, Austin, TX 78712, USA
Submitted (06-SEP-2016) Molecular Biosciences, University of Texas, 2506 Speedway Stop A5000, Austin, TX 78712, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP017255.2.\n\nOn Mar 7, 2018 this sequence version replaced NZ_CP017255.1.\nSource bacteria are available from James R. Walker, Department of\nMolecular Biosciences, University of Texas, 2506 Speedway Stop\nA5000, Austin, TX 78712.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.7; Consed v. 22.0\nGenome Coverage :: 56x;900x\nSequencing Technology :: 454; Illumina; Sanger dideoxy sequencing\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 10:05:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,232\nCDSs (total) :: 3,127\nGenes (coding) :: 3,067\nCDSs (with protein) :: 3,067\nGenes (RNA) :: 105\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 5\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 43 of 60\nPseudo Genes (incomplete) :: 17 of 60\nPseudo Genes (internal stop) :: 12 of 60\nPseudo Genes (multiple problems) :: 11 of 60\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010073145.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010073144.1
COORDINATES: similar to AA sequence:RefSeq:WP_010073143.1
COORDINATES: similar to AA sequence:RefSeq:WP_003453878.1
type I restriction endonuclease subunit R
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017825635.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890861.1
COORDINATES: protein motif:HMM:TIGR04085.1
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_003373774.1
COORDINATES: similar to AA sequence:RefSeq:WP_003372269.1
COORDINATES: similar to AA sequence:RefSeq:WP_013272964.1
COORDINATES: protein motif:HMM:NF021518.2
COORDINATES: similar to AA sequence:RefSeq:WP_003182156.1
COORDINATES: similar to AA sequence:RefSeq:WP_003373646.1
COORDINATES: similar to AA sequence:RefSeq:WP_017826082.1
COORDINATES: similar to AA sequence:RefSeq:WP_017826229.1
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_015614954.1
COORDINATES: similar to AA sequence:RefSeq:WP_009171013.1
COORDINATES: similar to AA sequence:RefSeq:WP_009171014.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_017352411.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_003427292.1
COORDINATES: protein motif:HMM:TIGR01847.1
COORDINATES: similar to AA sequence:RefSeq:WP_003423279.1
COORDINATES: protein motif:HMM:NF016526.2
GO:0008233 - peptidase activity [Evidence IEA]
GO:0009372 - quorum sensing [Evidence IEA]
accessory gene regulator B family protein
COORDINATES: protein motif:HMM:TIGR04223.1
COORDINATES: protein motif:HMM:NF025854.2
COORDINATES: similar to AA sequence:RefSeq:WP_010963408.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020062195.1
COORDINATES: protein motif:HMM:TIGR01654.1
COORDINATES: similar to AA sequence:RefSeq:WP_000571715.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
putative bacteriocin export ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_003441391.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012372.2
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017352487.1
COORDINATES: similar to AA sequence:RefSeq:WP_017826424.1
COORDINATES: similar to AA sequence:RefSeq:WP_002582495.1
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF040203.1
COORDINATES: similar to AA sequence:RefSeq:WP_017352474.1
COORDINATES: similar to AA sequence:RefSeq:WP_012451343.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395551.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017826452.1
COORDINATES: similar to AA sequence:RefSeq:WP_017826423.1
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: similar to AA sequence:RefSeq:WP_000213490.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_004455331.1
COORDINATES: similar to AA sequence:RefSeq:WP_004455329.1