Clostridium taeniosporum strain 1/k plasmid pCt1, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Genomics of Clostridium taeniosporum, an organism which forms endospores with ribbon-like appendages
Submitted (06-SEP-2016) Molecular Biosciences, University of Texas, 2506 Speedway Stop A5000, Austin, TX 78712, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP017254.1.\nSource bacteria are available from James R. Walker, Department of\nMolecular Biosciences, University of Texas, 2506 Speedway Stop\nA5000, Austin, TX 78712.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.7; Consed v. 22.0\nGenome Coverage :: 56x;900x\nSequencing Technology :: 454; Illumina; Sanger dideoxy sequencing\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 10:05:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,232\nCDSs (total) :: 3,127\nGenes (coding) :: 3,067\nCDSs (with protein) :: 3,067\nGenes (RNA) :: 105\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 5\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 43 of 60\nPseudo Genes (incomplete) :: 17 of 60\nPseudo Genes (internal stop) :: 12 of 60\nPseudo Genes (multiple problems) :: 11 of 60\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017352643.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015392433.1
COORDINATES: protein motif:HMM:NF019844.2
COORDINATES: similar to AA sequence:RefSeq:WP_006002000.1
plasmid mobilization relaxosome protein MobC