Anaerobutyricum hallii strain EHAL plasmid pEHAL01, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae; Anaerobutyricum.
Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation
Submitted (15-APR-2021) Research, Pendulum Therapeutics, 933 20th Street, San Francisco, CA 94107, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP073281.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 164x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/25/2023 06:11:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,085\nCDSs (total) :: 2,981\nGenes (coding) :: 2,894\nCDSs (with protein) :: 2,894\nGenes (RNA) :: 104\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 4\nPseudo Genes (total) :: 87\nCDSs (without protein) :: 87\nPseudo Genes (ambiguous residues) :: 0 of 87\nPseudo Genes (frameshifted) :: 33 of 87\nPseudo Genes (incomplete) :: 54 of 87\nPseudo Genes (internal stop) :: 14 of 87\nPseudo Genes (multiple problems) :: 13 of 87\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015541851.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009204471.1
class I adenylate-forming enzyme family protein
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: similar to AA sequence:RefSeq:WP_005336994.1
COORDINATES: protein motif:HMM:NF012442.2