Anaerobutyricum hallii strain EHAL plasmid pEHAL01, complete sequence.
type: Entry
definition: Anaerobutyricum hallii strain EHAL plasmid pEHAL01, complete sequence.
sequence version: NZ_CP073281.1
sequence date: 2023-05-25
sequence: sequence
division: CON
label: NZ_CP073281.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18751769
keyword: RefSeq
source: Anaerobutyricum hallii
organism: Anaerobutyricum hallii
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae; Anaerobutyricum.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP073281.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 164x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/25/2023 06:11:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,085\nCDSs (total) :: 2,981\nGenes (coding) :: 2,894\nCDSs (with protein) :: 2,894\nGenes (RNA) :: 104\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 4\nPseudo Genes (total) :: 87\nCDSs (without protein) :: 87\nPseudo Genes (ambiguous residues) :: 0 of 87\nPseudo Genes (frameshifted) :: 33 of 87\nPseudo Genes (incomplete) :: 54 of 87\nPseudo Genes (internal stop) :: 14 of 87\nPseudo Genes (multiple problems) :: 13 of 87\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14013
topology: circular
so has quality: SO_0000988
location: 1..14013
location: region:1-14013:1
RO_0002162: 39488

NZ_CP073281
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18751769
type: BioSample
SIO_000068: biosample

1
title: Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation
author: McMurdie, P.
author: Stoeva, M.K.
author: Justice, N.
author: Nemchek, M.
author: Sieber, C.M.K.
author: Tyagi, S.
author: Gines, J.
author: Eid, J.
author: Kolterman, O.
journal: Unpublished

2
title: Direct Submission
author: McMurdie, P.
author: Stoeva, M.K.
author: Justice, N.
author: Nemchek, M.
author: Sieber, C.M.K.
author: Tyagi, S.
author: Gines, J.
author: Eid, J.
author: Kolterman, O.
journal: Submitted (15-APR-2021) Research, Pendulum Therapeutics, 933 20th Street, San Francisco, CA 94107, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14013:1
position: 14013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14013:1:source
so part of: sequence
organism: Anaerobutyricum hallii
mol type: genomic DNA
strain: EHAL
host: Homo sapiens
plasmid: pEHAL01
country: USA
collection date: 2016-09-22

39488
type: Taxonomy
SIO_000068: taxonomy

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 39488
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00059
inference: COORDINATES: profile:INFERNAL:1.1.4
note: TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: thiamine pyrophosphate
so part of: sequence
location: complement(387..495)
location: region:387-495:-1
so has part: feature:387-495:-1:region

position:387:-1
position: 387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495:-1
position: 495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387-495:-1:region

KDJ91_RS15205
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15205
old locus tag: KDJ91_15205
so part of: sequence
location: complement(547..774)
location: region:547-774:-1
so has part: feature:547-774:-1:exon
subclass of: SO_0000010

75049910
type: Gene
SIO_000068: ncbigene

position:547:-1
position: 547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:774:-1
position: 774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:547-774:-1:exon

KDJ91_RS15205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15205
old locus tag: KDJ91_15205
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNISCKIYVIVCERIYPSFLGTPLGAMIYVVVEELIPEMSVGKHSNIGTIFFSLGFTVMLTLDVVLGTSALPSE
SIO_010081: KDJ91_RS15205
subclass of: SO_0000673
so part of: KDJ91_RS15205
location: complement(547..774)
location: region:547-774:-1
so has part: feature:547-774:-1:exon

WP_135960877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:547-774:-1:exon

KDJ91_RS15210
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15210
old locus tag: KDJ91_15210
so part of: sequence
location: complement(832..1545)
location: region:832-1545:-1
so has part: feature:832-1545:-1:exon
subclass of: SO_0000010

75049911
type: Gene
SIO_000068: ncbigene

position:832:-1
position: 832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1545:-1
position: 1545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:832-1545:-1:exon

KDJ91_RS15210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15210
old locus tag: KDJ91_15210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015541851.1
GO function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO process: GO:0030001 - metal ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ZIP family metal transporter
translation: MGTTLGAFCVFFLKNELSKGMQKALMGFAAGVMVAASIWSLLLPALEQVDSIGVWKFLPAASGFWIGILFLMAIDHFAPSECIDGKCKNKLLLAVTIHNIPEGMAVGVIYAGLLSGAEHITVMGAFSLALGIVIQNFPEGAIISLPLRAEGISQKRAFIYGVLSGAVEPVAAILTVWAASLIVPLLPYFLSFAAGAMFYVVVEELVPKMSVGKSVNVGFFMFSVGFTLMMILDVALA
SIO_010081: KDJ91_RS15210
subclass of: SO_0000673
so part of: KDJ91_RS15210
location: complement(832..1545)
location: region:832-1545:-1
so has part: feature:832-1545:-1:exon

WP_249539009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:832-1545:-1:exon

KDJ91_RS15215
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15215
old locus tag: KDJ91_15215
so part of: sequence
location: complement(1610..2029)
location: region:1610-2029:-1
so has part: feature:1610-2029:-1:exon
subclass of: SO_0000010

75049912
type: Gene
SIO_000068: ncbigene

position:1610:-1
position: 1610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2029:-1
position: 2029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1610-2029:-1:exon

KDJ91_RS15215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15215
old locus tag: KDJ91_15215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWKKSKRILLCILALMLLLSMAKSEQLFVQADMESTEKVQTKDVKNRSQRQEENSDEKGQEESTDKKEEASTKATQKTEETIKEDKKNLEATTQKEKDASKNDEAKEETEEKTEEYKREEENTERKTDENKAAEEVSAE
SIO_010081: KDJ91_RS15215
subclass of: SO_0000673
so part of: KDJ91_RS15215
location: complement(1610..2029)
location: region:1610-2029:-1
so has part: feature:1610-2029:-1:exon

WP_044921395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1610-2029:-1:exon

KDJ91_RS15220
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15220
old locus tag: KDJ91_15220
so part of: sequence
location: complement(2248..3984)
location: region:2248-3984:-1
so has part: feature:2248-3984:-1:exon
subclass of: SO_0000010

75049913
type: Gene
SIO_000068: ncbigene

position:2248:-1
position: 2248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3984:-1
position: 3984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2248-3984:-1:exon

KDJ91_RS15220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15220
old locus tag: KDJ91_15220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009204471.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I adenylate-forming enzyme family protein
translation: MEKNHKVELIGRPSIDRPWMKYYPESISRLQVPELSLNEYLKANCPGMDMVAMHYYGRDVSWERFFVKVDMVAKSMSAMGIKEGDQIPVFYRSVPEFIVLLLAAEKIGASLVCRDNTLQENVDAVKEAGAKIIFVHDFLPKAEVEEYKKQAGVETIISLSPYHAAEKDKMPEHIIHEIDSFYTDGILSGDGVMTWEEFLEKGKNYTGKVEVEKDVNRPLFRAYTSGSTGTSKQVIHSAYTMIGIIAQMSFYGSAGDFRPTWLLTNLPPCLIAVVVSMILVPLCSNKLLILDPFCNVNDLDLEMMRYRPNCWPLIPMFIELLMRSDRIPEDYDMSHLFAAGVGCEAFNNGQIRRAQEFLKAHNCKAVLSIGYGQSEAGSNCTLPCLEHPIGNGNSGIPMPLTVMSIFEPGTHKEVGYNKLGEICKTGLGNMLGYDREEATEKALQKHEDGNIWLHTGDIGYMTEDGIVFALTRGDVRRVGGGRLIDLNMENKIIDAEIDGIIDAFFVVDEDFENKGYFLPYLYVVLEDGYTIDDIREDVADALEDFEYPAQIIQLPERPFFHYKTNRVGLKAQLRATTN
SIO_010081: KDJ91_RS15220
subclass of: SO_0000673
so part of: KDJ91_RS15220
location: complement(2248..3984)
location: region:2248-3984:-1
so has part: feature:2248-3984:-1:exon

WP_005343921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2248-3984:-1:exon

KDJ91_RS15225
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15225
old locus tag: KDJ91_15225
so part of: sequence
location: complement(4125..5606)
location: region:4125-5606:-1
so has part: feature:4125-5606:-1:exon
subclass of: SO_0000010

75049914
type: Gene
SIO_000068: ncbigene

position:4125:-1
position: 4125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5606:-1
position: 5606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4125-5606:-1:exon

KDJ91_RS15225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15225
old locus tag: KDJ91_15225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MEKKNRFSILLERLMGTVNLKNATLAAELQYDVSYISKWINGKTLPSEKSVAQILHVISDYIVESATSAALKTLYIEYQVDVPEDLKQAIYDNLEAEYFYVKGLTKTIGADIAPETQNYAKLTLYQFLKKMSHPALRQVKSLNVIAAIDLLNMEHDVRLQIAQIDTASQILQRDFPEVHFSLLINFDIGEKDYIYDCIFIINMLTNYTHINFKIYNCIHSYDKIVFCAKDAYCITSMLLGGNLCYQVTISEDKKMCKTVYQRLATLCTREELMFRKCTMRNLLQGSDYISQMLSENLCWLLGHMTEHFLPEELHKELLEYLDISDAEREKMQNIHLLVEEVLKKSHVRILLYETALSQFAISGELDFYNNKILLDTRQREQCLSYIQNIIHEENAMELRIIHGHFVMDFQFNANPSLFLSNNLCYLRLDSKNIQNNVTLLNINIAKKMFRCFFEEIWSHSEEDVVISDWRKIESILKHMKQSVALLKKVDKEI
SIO_010081: KDJ91_RS15225
subclass of: SO_0000673
so part of: KDJ91_RS15225
location: complement(4125..5606)
location: region:4125-5606:-1
so has part: feature:4125-5606:-1:exon

WP_005343922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4125-5606:-1:exon

KDJ91_RS15230
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15230
old locus tag: KDJ91_15230
so part of: sequence
location: complement(5745..10499)
location: region:5745-10499:-1
so has part: feature:5745-10499:-1:exon
subclass of: SO_0000010

75049915
type: Gene
SIO_000068: ncbigene

position:5745:-1
position: 5745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10499:-1
position: 10499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5745-10499:-1:exon

KDJ91_RS15230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15230
old locus tag: KDJ91_15230
inference: COORDINATES: protein motif:HMM:NF014427.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ig-like domain-containing protein
translation: MKKQVKNLFALFLTASMAVSLVPADAFAAVHDAVKDATTTTAYEKVEAEKKAAQPKAGSAEAAIQEALYTNTDEVDLSKYNLTERKAEKLTDKSLGDDKDTDLVDVTYETDANGKVTTMSVEKDDTYAYALEEIEELAADDADEDDGSGKTKTEVGQAYKDLMAFYESPDNQEYLGIATPYFTSKDSKGGPVSSLLSLMQQKIYKEGDPEEENPANAKVTYKDMYDVIQGYQTTLQYGIQLFGQQLLAARDEALAQIDDSMTREQKLLVLNDWLGKYCTFDMGAIQEEQDKKNDTETTEEAIQAMGETAAVALADDGQQQPTEEQIAYLRNMLLNGDLKTAFESTAFGALVRRNTICAGYTSAYTYLVQCAFPEIYKEADGKTWKKASEVNGTDSSQDKKDDNSSSENKGDTSETDKEESSSAAETETQAADGEDSSGDASSEKKDETTTETKPTYIVDFVKIFWRSDVQMLGQSQTFRNSHYFNAVKTDNSVDNWYYVDSCYNDIYVECMGRNRVETDGNMTHSYFLISHTSLAKQFDGNFDEIDTLYTDKATDTKYEDAWFTDAQGPISFDKDNWYYVQNTTSYSSGMGTSDQKPDQLVSLPRKAAATATSDSATVLVDYEKGTGAVKEGGDLLKESATKDEDVNDKIYPGLTHTSAYYGGALYLNADNQILKYDLSTNAITKVKEYNEVTAKSVADNMGTGINNNFTGMTFKVTTKDDKDAIHTVENHPIAGLSIDSQGNLNVDIATNYCYVDKYQTEQTNYNSGYMNYKFQGTTIKRGGSNDNQEFMWSADFVETLDMKHVAGDSHEYETVTVDPTCDNAGFTEERCKTCGVVKADSKKESEAEDAKATGHHYIQYKDETYTKESDAEDAKKIVVDAIVCTKCLKAIPRKSSGNSGSIMGGSNDNSDELDIPDGLKTGHEYTGKITSLSDDKKTGNVTVSCDSCVGKELDFLDEKDVTLETKKDVEVTSKKEAEDCEKGGKIIYTAKVTVGDNEYEATTTEEAAAEKHVYKPEFTWADDNTCTVTYTCENCKIPATEAEKCEVTSEVTEPTCTEAGKTVYTATATDKNNINHTDTKEVPIEATGHTYSADPTYEWSEDYKTCKAIFTCDKKDDTQTVECTVTPATTDATCTEAGKVVYTATCTFKGKEYTCPEKKETTIAATGHKYGEPTFNWSEDGKECTATFTCENDKTHTKDVKCTVTKDAEKSTDATCTEAGKAVYVATVKEDPNGSDEYTDTKEVKTTNALGHDYGEPTFGEWTEKDGKMTCEATFTCKNDASHVETVSCEVTSEGKDATYTEAGSVTYTATATVPEGTKTYINPVKKEVKVAQKDSKAKFAKTSYNLYSTQSGKVSLVSDYKQDGIVSIKSSNPSKVSVNTAGVIKAGVVKGKAVKVTITAVVKSGKTIKTVVTVAPTKITLNATSVPLQLKKSTSVIKVAKATLPGDQIASWSTSNKKVVIVSKSGKITAKKVGTAVVRITMKSGATAKCKVKVQKAAVKLTKIAVNSKKVNLNLKKGPKTYKLTATKAPITVVNKVTFTTSNKKVAVVSKSGKITAKKAGKAVITVKCAKKVQKVTVVVKAK
SIO_010081: KDJ91_RS15230
subclass of: SO_0000673
so part of: KDJ91_RS15230
location: complement(5745..10499)
location: region:5745-10499:-1
so has part: feature:5745-10499:-1:exon

WP_005343925.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5745-10499:-1:exon

KDJ91_RS15235
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
gene: smpB
locus tag: KDJ91_RS15235
old locus tag: KDJ91_15235
so part of: sequence
location: complement(10771..11244)
location: region:10771-11244:-1
so has part: feature:10771-11244:-1:exon
subclass of: SO_0000010

75049916
type: Gene
SIO_000068: ncbigene

position:10771:-1
position: 10771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11244:-1
position: 11244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10771-11244:-1:exon

KDJ91_RS15235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
gene: smpB
locus tag: KDJ91_RS15235
old locus tag: KDJ91_15235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005336994.1
GO function: GO:0003723 - RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SsrA-binding protein SmpB
translation: MAKSEGIKLIANNKKAYHDYFIDEKYEAGIALHGTEVKSLRMGRCSIKESFVTISNKGEILINHMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLAGQIKMKGYTLMPLKVYFKGSLVKVEIGLARGKKLYDKRQDIAKKDAKREVERDFKIRNLG
SIO_010081: KDJ91_RS15235
subclass of: SO_0000673
so part of: KDJ91_RS15235
location: complement(10771..11244)
location: region:10771-11244:-1
so has part: feature:10771-11244:-1:exon

WP_044921399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10771-11244:-1:exon

KDJ91_RS15240
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15240
old locus tag: KDJ91_15240
so part of: sequence
location: complement(11427..11870)
location: region:11427-11870:-1
so has part: feature:11427-11870:-1:exon
subclass of: SO_0000010

75049917
type: Gene
SIO_000068: ncbigene

position:11427:-1
position: 11427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11870:-1
position: 11870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11427-11870:-1:exon

KDJ91_RS15240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15240
old locus tag: KDJ91_15240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIMISVISLLDDFYVFDEESYKLTGEHTGRIFTLGQKAEIVVHSANKMERTIDFILKEFSQYSDYPDPDDYYGDGMPSRKNEDAEAGKFENFESADGEYPVEQEEFEFDETGESLPDKDGILLNDWIDDEEADRLLHLYNKKKIDEI
SIO_010081: KDJ91_RS15240
subclass of: SO_0000673
so part of: KDJ91_RS15240
location: complement(11427..11870)
location: region:11427-11870:-1
so has part: feature:11427-11870:-1:exon

WP_044921401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11427-11870:-1:exon

KDJ91_RS15245
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15245
old locus tag: KDJ91_15245
so part of: sequence
location: complement(11836..12027)
location: region:11836-12027:-1
so has part: feature:11836-12027:-1:exon
subclass of: SO_0000010

75049918
type: Gene
SIO_000068: ncbigene

position:11836:-1
position: 11836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12027:-1
position: 12027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11836-12027:-1:exon

KDJ91_RS15245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15245
old locus tag: KDJ91_15245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAREKDLKELLEYYEQNLCHKIFKYELNNKINIEVIFYIEGLCHLLGIQHVYDNDKRYQPLR
SIO_010081: KDJ91_RS15245
subclass of: SO_0000673
so part of: KDJ91_RS15245
location: complement(11836..12027)
location: region:11836-12027:-1
so has part: feature:11836-12027:-1:exon

WP_005343937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11836-12027:-1:exon

KDJ91_RS15250
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15250
old locus tag: KDJ91_15250
so part of: sequence
location: complement(12336..13034)
location: region:12336-13034:-1
so has part: feature:12336-13034:-1:exon
subclass of: SO_0000010

75049919
type: Gene
SIO_000068: ncbigene

position:12336:-1
position: 12336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13034:-1
position: 13034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12336-13034:-1:exon

KDJ91_RS15250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15250
old locus tag: KDJ91_15250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKEIETKICSCCGKELKLNKFIKNRRLCKVGFRKEYKTSYQSVCKDCRNEKRQNTLKEKGMSLYDNGKLVQIRREYKKINLNRFLKQTEAKLEYLDRHERFVKLLYYDNTWISNYGRPVIKKEDGTYEFVKGKRNKITQEIEYSLRKNIYIKTKKAWGYKQERVSASSLFMMIIGEEHDLGVFDTKEECYEAFEKRKKEFIIKLAEKTKKKDKIPECQYQAMINWEVKAKE
SIO_010081: KDJ91_RS15250
subclass of: SO_0000673
so part of: KDJ91_RS15250
location: complement(12336..13034)
location: region:12336-13034:-1
so has part: feature:12336-13034:-1:exon

WP_044921403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12336-13034:-1:exon

KDJ91_RS15255
type: Gene
subclass of: SO_0000704
RO_0002162: 39488
locus tag: KDJ91_RS15255
old locus tag: KDJ91_15255
so part of: sequence
location: complement(13244..13600)
location: region:13244-13600:-1
so has part: feature:13244-13600:-1:exon
subclass of: SO_0000010

75049920
type: Gene
SIO_000068: ncbigene

position:13244:-1
position: 13244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13600:-1
position: 13600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13244-13600:-1:exon

KDJ91_RS15255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 39488
locus tag: KDJ91_RS15255
old locus tag: KDJ91_15255
inference: COORDINATES: protein motif:HMM:NF012442.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: METISRQEFIDMVAAKSNNRYPKIDLYYIIRDAFWCLEDILRDGNRFEVKGILGIYPEYIEERQYNNFNKGKATVPPHYKPVIKPYSRLKRACEELTEERLGEGLNEAEEDFDYSEEE
SIO_010081: KDJ91_RS15255
subclass of: SO_0000673
so part of: KDJ91_RS15255
location: complement(13244..13600)
location: region:13244-13600:-1
so has part: feature:13244-13600:-1:exon

WP_005343943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13244-13600:-1:exon