Companilactobacillus crustorum strain MN047 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Companilactobacillus.
Complete genome suquence of Lactobacillus crustorum MN047, a probiotic strain originated from koumiss of China
Submitted (03-NOV-2016) College of Food Science and Engineering, Northwest A&F University, Xinong Road NO.22 of Yangling, Xi'an, Shannxi 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP017998.1.\nBacteria and source DNA available from College of Food Science and\nEngineering Bioresource Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2016\nAssembly Method :: RS_HGAP Assembly 3 v. v2.3.0\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio; hiseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:07:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,291\nCDSs (total) :: 2,221\nGenes (coding) :: 2,168\nCDSs (with protein) :: 2,168\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 25 of 53\nPseudo Genes (incomplete) :: 23 of 53\nPseudo Genes (internal stop) :: 12 of 53\nPseudo Genes (multiple problems) :: 7 of 53\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: Changji city, Xinjiang Uygur Autonomous Region
COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611862.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
COORDINATES: similar to AA sequence:RefSeq:WP_017369153.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007472881.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333939.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004906024.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1