Alicyclobacillus fastidiosus strain DSM 17978 plasmid unnamed3, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.
Alicyclobacillus fastidiosus DSM 17978, complete genome
Submitted (31-AUG-2022) College of Food Science and Engineering, Northwest A&F University, Yangling, Xianyang, Shaanxi 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP104070.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v1.5; GATK v. v1.6-13\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 420.17x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 12:01:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,847\nCDSs (total) :: 5,663\nGenes (coding) :: 5,447\nCDSs (with protein) :: 5,447\nGenes (RNA) :: 184\nrRNAs :: 14, 15, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 15, 15 (5S, 16S, 23S)\ntRNAs :: 135\nncRNAs :: 5\nPseudo Genes (total) :: 216\nCDSs (without protein) :: 216\nPseudo Genes (ambiguous residues) :: 0 of 216\nPseudo Genes (frameshifted) :: 98 of 216\nPseudo Genes (incomplete) :: 136 of 216\nPseudo Genes (internal stop) :: 30 of 216\nPseudo Genes (multiple problems) :: 43 of 216\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Alicyclobacillus fastidiosus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:NP_052641.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family plasmid partition protein
COORDINATES: similar to AA sequence:RefSeq:NP_052640.1
COORDINATES: similar to AA sequence:RefSeq:WP_000852146.1
COORDINATES: similar to AA sequence:RefSeq:NP_052636.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011152976.1
type A chloramphenicol O-acetyltransferase
COORDINATES: protein motif:HMM:NF012307.2
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein