Alicyclobacillus fastidiosus strain DSM 17978 plasmid unnamed3, complete sequence.
type: Entry
definition: Alicyclobacillus fastidiosus strain DSM 17978 plasmid unnamed3, complete sequence.
sequence version: NZ_CP104070.1
sequence date: 2022-12-09
sequence: sequence
division: CON
label: NZ_CP104070.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN30609215
keyword: RefSeq
source: Alicyclobacillus fastidiosus
organism: Alicyclobacillus fastidiosus
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP104070.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v1.5; GATK v. v1.6-13\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 420.17x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 12:01:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,847\nCDSs (total) :: 5,663\nGenes (coding) :: 5,447\nCDSs (with protein) :: 5,447\nGenes (RNA) :: 184\nrRNAs :: 14, 15, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 15, 15 (5S, 16S, 23S)\ntRNAs :: 135\nncRNAs :: 5\nPseudo Genes (total) :: 216\nCDSs (without protein) :: 216\nPseudo Genes (ambiguous residues) :: 0 of 216\nPseudo Genes (frameshifted) :: 98 of 216\nPseudo Genes (incomplete) :: 136 of 216\nPseudo Genes (internal stop) :: 30 of 216\nPseudo Genes (multiple problems) :: 43 of 216\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 39760
topology: circular
so has quality: SO_0000988
location: 1..39760
location: region:1-39760:1
RO_0002162: 392011

NZ_CP104070
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN30609215
type: BioSample
SIO_000068: biosample

1
title: Alicyclobacillus fastidiosus DSM 17978, complete genome
author: Wang, Q.
author: Cai, R.
author: Wang, Z.
journal: Unpublished

2
title: Direct Submission
author: Wang, Q.
author: Cai, R.
author: Wang, Z.
journal: Submitted (31-AUG-2022) College of Food Science and Engineering, Northwest A&F University, Yangling, Xianyang, Shaanxi 712100, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39760:1
position: 39760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39760:1:source
so part of: sequence
organism: Alicyclobacillus fastidiosus
mol type: genomic DNA
strain: DSM 17978
culture collection: DSM:17978
type material: type strain of Alicyclobacillus fastidiosus
plasmid: unnamed3
country: China:Shaanxi
collection date: 2022-06-10

392011
type: Taxonomy
SIO_000068: taxonomy

NZD89_RS29165
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29165
old locus tag: NZD89_29175
so part of: sequence
location: complement(2120..2452)
location: region:2120-2452:-1
so has part: feature:2120-2452:-1:exon
subclass of: SO_0000010

position:2120:-1
position: 2120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2452:-1
position: 2452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2120-2452:-1:exon

NZD89_RS29165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29165
old locus tag: NZD89_29175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAATTSTGCSSFFNLRGSQVEPRVRSPPGHGSPACQKLDGVATWFIHGVSSAFFASLERCSCIRIATHEDDGDDAKDLPLIFNDGNHRYDVGGSGSRRRAGKGKKGAGEE
SIO_010081: NZD89_RS29165
subclass of: SO_0000673
so part of: NZD89_RS29165
location: complement(2120..2452)
location: region:2120-2452:-1
so has part: feature:2120-2452:-1:exon

WP_268008904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2120-2452:-1:exon

NZD89_RS29170
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29170
old locus tag: NZD89_29180
so part of: sequence
location: complement(6043..6165)
location: region:6043-6165:-1
so has part: feature:6043-6165:-1:exon
subclass of: SO_0000010

position:6043:-1
position: 6043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6165:-1
position: 6165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6043-6165:-1:exon

NZD89_RS29170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29170
old locus tag: NZD89_29180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRAQEETEEEEEGKGKRKEKEKKGKKMEENVRKSKKILEK
SIO_010081: NZD89_RS29170
subclass of: SO_0000673
so part of: NZD89_RS29170
location: complement(6043..6165)
location: region:6043-6165:-1
so has part: feature:6043-6165:-1:exon

WP_268008906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6043-6165:-1:exon

NZD89_RS29175
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29175
old locus tag: NZD89_29185
so part of: sequence
location: 8406..8615
location: region:8406-8615:1
so has part: feature:8406-8615:1:exon
subclass of: SO_0000010

position:8406:1
position: 8406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8615:1
position: 8615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8406-8615:1:exon

NZD89_RS29175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29175
old locus tag: NZD89_29185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMSKELLMMLGVIFRLNSLHIMISITKIEEWKIGTTETKEVVLLPGAMSIREIKIVMIGKVGLNLEIGA
SIO_010081: NZD89_RS29175
subclass of: SO_0000673
so part of: NZD89_RS29175
location: 8406..8615
location: region:8406-8615:1
so has part: feature:8406-8615:1:exon

WP_268008907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8406-8615:1:exon

NZD89_RS29180
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29180
old locus tag: NZD89_29190
so part of: sequence
location: complement(11039..12010)
location: region:11039-12010:-1
so has part: feature:11039-12010:-1:exon
subclass of: SO_0000010

position:11039:-1
position: 11039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12010:-1
position: 12010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11039-12010:-1:exon

NZD89_RS29180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29180
old locus tag: NZD89_29190
inference: COORDINATES: similar to AA sequence:RefSeq:NP_052641.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family plasmid partition protein
translation: MKRAPVIPKHTLNTQPVEDTSLSTPAAPMVDSLIARVGVMARGNAITLPVCGRDVKFTLEVLRGDSVEKTSRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSGVIEIADGSRRRKAAALTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEAEEVITLLTSVLKTSSASRTSLSSRHQFAPGATVLYKGDKMVLNLDRSRVPTECIEKIEAILKELEKPAP
SIO_010081: NZD89_RS29180
subclass of: SO_0000673
so part of: NZD89_RS29180
location: complement(11039..12010)
location: region:11039-12010:-1
so has part: feature:11039-12010:-1:exon

WP_000817031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11039-12010:-1:exon

NZD89_RS29185
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
gene: sopA
locus tag: NZD89_RS29185
old locus tag: NZD89_29195
so part of: sequence
location: complement(12010..13176)
location: region:12010-13176:-1
so has part: feature:12010-13176:-1:exon
subclass of: SO_0000010

position:13176:-1
position: 13176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12010-13176:-1:exon

NZD89_RS29185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
gene: sopA
locus tag: NZD89_RS29185
old locus tag: NZD89_29195
inference: COORDINATES: similar to AA sequence:RefSeq:NP_052640.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid-partitioning protein SopA
translation: MKLMETLNQCINAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEIRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDVTYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
SIO_010081: NZD89_RS29185
subclass of: SO_0000673
so part of: NZD89_RS29185
location: complement(12010..13176)
location: region:12010-13176:-1
so has part: feature:12010-13176:-1:exon

WP_000772446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12010-13176:-1:exon

NZD89_RS29190
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
gene: repE
locus tag: NZD89_RS29190
old locus tag: NZD89_29200
so part of: sequence
location: complement(13764..14519)
location: region:13764-14519:-1
so has part: feature:13764-14519:-1:exon
subclass of: SO_0000010

position:13764:-1
position: 13764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14519:-1
position: 14519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13764-14519:-1:exon

NZD89_RS29190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
gene: repE
locus tag: NZD89_RS29190
old locus tag: NZD89_29200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000852146.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepE
translation: MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG
SIO_010081: NZD89_RS29190
subclass of: SO_0000673
so part of: NZD89_RS29190
location: complement(13764..14519)
location: region:13764-14519:-1
so has part: feature:13764-14519:-1:exon

WP_000852146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13764-14519:-1:exon

NZD89_RS29195
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29195
old locus tag: NZD89_29205
so part of: sequence
location: complement(15372..15584)
location: region:15372-15584:-1
so has part: feature:15372-15584:-1:exon
subclass of: SO_0000010

position:15372:-1
position: 15372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15584:-1
position: 15584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15372-15584:-1:exon

NZD89_RS29195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29195
old locus tag: NZD89_29205
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMWSVLLQPVVLAAVERQGEALGWLPSPLGWRPSMALQTRQKRRRSRVRDTAAGRRRCGYLAENLALTDR
SIO_010081: NZD89_RS29195
subclass of: SO_0000673
so part of: NZD89_RS29195
location: complement(15372..15584)
location: region:15372-15584:-1
so has part: feature:15372-15584:-1:exon

WP_162274079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15372-15584:-1:exon

NZD89_RS29200
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29200
old locus tag: NZD89_29210
pseudo: true
so part of: sequence
location: complement(15911..>16258)
location: region:15911-16258:-1
so has part: feature:15911-16258:-1:exon
subclass of: SO_0000010

position:15911:-1
position: 15911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16258:-1
position: 16258
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15911-16258:-1:exon

NZD89_RS29200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29200
old locus tag: NZD89_29210
inference: COORDINATES: similar to AA sequence:RefSeq:NP_052636.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
SIO_010081: NZD89_RS29200
subclass of: SO_0000673
so part of: NZD89_RS29200
location: complement(15911..>16258)
location: region:15911-16258:-1
so has part: feature:15911-16258:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15911-16258:-1:exon

NZD89_RS29205
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
gene: catA
locus tag: NZD89_RS29205
old locus tag: NZD89_29215
so part of: sequence
location: 16488..17135
location: region:16488-17135:1
so has part: feature:16488-17135:1:exon
subclass of: SO_0000010

position:16488:1
position: 16488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17135:1
position: 17135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16488-17135:1:exon

NZD89_RS29205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
gene: catA
locus tag: NZD89_RS29205
old locus tag: NZD89_29215
EC number: 2.3.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011152976.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type A chloramphenicol O-acetyltransferase
translation: MTGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA
SIO_010081: NZD89_RS29205
subclass of: SO_0000673
so part of: NZD89_RS29205
location: 16488..17135
location: region:16488-17135:1
so has part: feature:16488-17135:1:exon

WP_029676039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16488-17135:1:exon

NZD89_RS29210
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29210
old locus tag: NZD89_29220
so part of: sequence
location: 19356..19778
location: region:19356-19778:1
so has part: feature:19356-19778:1:exon
subclass of: SO_0000010

position:19356:1
position: 19356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19778:1
position: 19778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19356-19778:1:exon

NZD89_RS29210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29210
old locus tag: NZD89_29220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNREARARARARQQARGEGKPRVRARERGRTVSESQTARARARARARQQVRARARPQVKRDNEGEGEATSETRGREARGEGERREARAREPGRAESQRGGLRDLGADWAIGDRGFWGRGFWRKRRGIPASSIYLFFFNI
SIO_010081: NZD89_RS29210
subclass of: SO_0000673
so part of: NZD89_RS29210
location: 19356..19778
location: region:19356-19778:1
so has part: feature:19356-19778:1:exon

WP_268008911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19356-19778:1:exon

NZD89_RS29215
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29215
old locus tag: NZD89_29225
so part of: sequence
location: 20223..20543
location: region:20223-20543:1
so has part: feature:20223-20543:1:exon
subclass of: SO_0000010

position:20223:1
position: 20223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20543:1
position: 20543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20223-20543:1:exon

NZD89_RS29215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29215
old locus tag: NZD89_29225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKCIKDENQNVLVNEGAIKERWKEYFTKLFNDNGDTRVRLGHLSNSEGNVSYTFYRRISPNEIRQALKKMKNHKAVGPDNIPIEAWKCMGEEGISWLTKFFNAILK
SIO_010081: NZD89_RS29215
subclass of: SO_0000673
so part of: NZD89_RS29215
location: 20223..20543
location: region:20223-20543:1
so has part: feature:20223-20543:1:exon

WP_268008899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20223-20543:1:exon

NZD89_RS29220
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29220
old locus tag: NZD89_29230
pseudo: true
so part of: sequence
location: <20709..21284
location: region:20709-21284:1
so has part: feature:20709-21284:1:exon
subclass of: SO_0000010

position:20709:1
position: 20709
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:21284:1
position: 21284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20709-21284:1:exon

NZD89_RS29220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29220
old locus tag: NZD89_29230
inference: COORDINATES: protein motif:HMM:NF012307.2
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: reverse transcriptase family protein
SIO_010081: NZD89_RS29220
subclass of: SO_0000673
so part of: NZD89_RS29220
location: <20709..21284
location: region:20709-21284:1
so has part: feature:20709-21284:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20709-21284:1:exon

NZD89_RS29225
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29225
old locus tag: NZD89_29235
so part of: sequence
location: 21315..21746
location: region:21315-21746:1
so has part: feature:21315-21746:1:exon
subclass of: SO_0000010

position:21315:1
position: 21315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21746:1
position: 21746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21315-21746:1:exon

NZD89_RS29225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29225
old locus tag: NZD89_29235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIQKDGEIHEDVTHRIKTGWLKWRNASRVLCDSKIPLKLKGKFYRTAIRPALLYDSKCWAVKYQHEQKTSVAEMRMLRWMCGHIRKDKIRNKVIRNKIGVVPIEEKVRDTRLRWFGHVRRRPKDAPVRRVDEIEQLIKKRSRG
SIO_010081: NZD89_RS29225
subclass of: SO_0000673
so part of: NZD89_RS29225
location: 21315..21746
location: region:21315-21746:1
so has part: feature:21315-21746:1:exon

WP_268008900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21315-21746:1:exon

NZD89_RS29230
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29230
old locus tag: NZD89_29240
so part of: sequence
location: complement(28120..28452)
location: region:28120-28452:-1
so has part: feature:28120-28452:-1:exon
subclass of: SO_0000010

position:28120:-1
position: 28120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28452:-1
position: 28452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28120-28452:-1:exon

NZD89_RS29230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29230
old locus tag: NZD89_29240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: reverse transcriptase domain-containing protein
translation: MDDIIIIENDIAERRCLQETLAKKFEIMNLGRLKYFLEIEVAYSKEGIFLSLQKYLLDLFKEIGILGGNTTKKWIFCDDFFATVLKQPQNMFFTAVYPTFCNDFEKSPQN
SIO_010081: NZD89_RS29230
subclass of: SO_0000673
so part of: NZD89_RS29230
location: complement(28120..28452)
location: region:28120-28452:-1
so has part: feature:28120-28452:-1:exon

WP_268008901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28120-28452:-1:exon

NZD89_RS29235
type: Gene
subclass of: SO_0000704
RO_0002162: 392011
locus tag: NZD89_RS29235
old locus tag: NZD89_29245
so part of: sequence
location: complement(28493..28663)
location: region:28493-28663:-1
so has part: feature:28493-28663:-1:exon
subclass of: SO_0000010

position:28493:-1
position: 28493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28663:-1
position: 28663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28493-28663:-1:exon

NZD89_RS29235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 392011
locus tag: NZD89_RS29235
old locus tag: NZD89_29245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELSPGFAYNIGDNKVCCLKKALYSLKQPSSAWFERFTQAMTKIEYSKAKETTPYL
SIO_010081: NZD89_RS29235
subclass of: SO_0000673
so part of: NZD89_RS29235
location: complement(28493..28663)
location: region:28493-28663:-1
so has part: feature:28493-28663:-1:exon

WP_268008903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28493-28663:-1:exon