Aquincola tertiaricarbonis strain RN12 plasmid B, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Aquincola.
An RpoN-dependent PEP-CTERM gene is involved in floc formation of an Aquincola tertiaricarbonis strain
Submitted (19-MAY-2022) Institute of Hydrobiology, Chinese Academy of Sciences, Donghu South Road, Wuhan 430000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP097638.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. v.2.21\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/04/2022 14:37:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,604\nCDSs (total) :: 6,540\nGenes (coding) :: 6,400\nCDSs (with protein) :: 6,400\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 140\nCDSs (without protein) :: 140\nPseudo Genes (ambiguous residues) :: 0 of 140\nPseudo Genes (frameshifted) :: 25 of 140\nPseudo Genes (incomplete) :: 120 of 140\nPseudo Genes (internal stop) :: 18 of 140\nPseudo Genes (multiple problems) :: 19 of 140\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_011831472.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930716.1
COORDINATES: protein motif:HMM:NF023898.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558120.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019404142.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_009759922.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013030391.1
COORDINATES: similar to AA sequence:RefSeq:WP_015279392.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_010218276.1
bifunctional alpha/beta hydrolase/OsmC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019947321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008647310.1
COORDINATES: similar to AA sequence:RefSeq:WP_008647302.1
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: similar to AA sequence:RefSeq:WP_020600995.1
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008647294.1
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010386505.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF028004.2
COORDINATES: similar to AA sequence:RefSeq:WP_009468909.1
COORDINATES: similar to AA sequence:RefSeq:WP_019883191.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013694.2
COORDINATES: protein motif:HMM:NF024260.2
COORDINATES: similar to AA sequence:RefSeq:WP_013122597.1
GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007041525.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012367250.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_008344892.1
COORDINATES: similar to AA sequence:RefSeq:WP_009205147.1
COORDINATES: similar to AA sequence:RefSeq:WP_015259808.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
lipopolysaccharide assembly protein LapA domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008250160.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013013153.1
subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011342397.1
COORDINATES: protein motif:HMM:NF014012.2
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013013149.1
GO:0015075 - ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: protein motif:HMM:TIGR01300.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_005918380.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752806.1
COORDINATES: similar to AA sequence:RefSeq:WP_002718015.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100853.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100856.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809177.1
Uncharacterized conserved protein, contains double-stranded beta-helix domain
COORDINATES: similar to AA sequence:RefSeq:WP_003465043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008932165.1
COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1
COORDINATES: similar to AA sequence:RefSeq:WP_003830784.1
COORDINATES: similar to AA sequence:RefSeq:WP_013521184.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_032488474.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003464991.1
AraC-type DNA-binding domain-containing proteins
COORDINATES: similar to AA sequence:RefSeq:WP_012080657.1
COORDINATES: similar to AA sequence:RefSeq:WP_046622600.1
COORDINATES: similar to AA sequence:RefSeq:WP_058167704.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003887.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015913610.1
COORDINATES: similar to AA sequence:RefSeq:WP_015913609.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_003804144.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008904914.1
COORDINATES: similar to AA sequence:RefSeq:WP_003804149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
COORDINATES: similar to AA sequence:RefSeq:WP_005793725.1
COORDINATES: similar to AA sequence:RefSeq:WP_016779388.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806808.1
COORDINATES: similar to AA sequence:RefSeq:WP_015913621.1
COORDINATES: similar to AA sequence:RefSeq:WP_009552875.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011484394.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012202405.1
COORDINATES: similar to AA sequence:RefSeq:WP_011311844.1
COORDINATES: protein motif:HMM:NF013862.2
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009552859.1
COORDINATES: similar to AA sequence:RefSeq:WP_009552858.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804712.1
COORDINATES: similar to AA sequence:RefSeq:WP_009552856.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009552855.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009552854.1
COORDINATES: similar to AA sequence:RefSeq:WP_009552851.1
COORDINATES: similar to AA sequence:RefSeq:WP_010953145.1
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009552849.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF023903.2
COORDINATES: similar to AA sequence:RefSeq:WP_009552847.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009552846.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009552844.1
COORDINATES: similar to AA sequence:RefSeq:WP_020508374.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218054.1
COORDINATES: similar to AA sequence:RefSeq:WP_011004416.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218091.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804684.1
COORDINATES: similar to AA sequence:RefSeq:WP_015912969.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831816.1
hybrid sensor histidine kinase/response regulator
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF015205.2
COORDINATES: protein motif:HMM:NF019886.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014161181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008054830.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013292929.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase