Octadecabacter antarcticus 307 plasmid pOA307_63, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Octadecabacter.
Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin
Poles apart: Extreme Genome Plasticity and a New Xanthorhodopsin-like Gene Family in the Genomes of Octadecabacter arcticus 238 and O. antarcticus 307
Submitted (06-JAN-2012) Goettingen Genomics Laboratory, Genomic and Applied Microbiology, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP003741.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 12:57:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,067\nCDSs (total) :: 5,013\nGenes (coding) :: 4,474\nCDSs (with protein) :: 4,474\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 539\nCDSs (without protein) :: 539\nPseudo Genes (ambiguous residues) :: 0 of 539\nPseudo Genes (frameshifted) :: 319 of 539\nPseudo Genes (incomplete) :: 337 of 539\nPseudo Genes (internal stop) :: 204 of 539\nPseudo Genes (multiple problems) :: 261 of 539\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Octadecabacter antarcticus
COORDINATES: similar to AA sequence:RefSeq:WP_008759056.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03454.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574266.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499842.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500727.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611421.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007811228.1
COORDINATES: similar to AA sequence:RefSeq:WP_004743500.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009157880.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015495702.1
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_007671259.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231569.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009492495.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019014029.1
COORDINATES: protein motif:HMM:NF024212.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007671268.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019171929.1
COORDINATES: similar to AA sequence:RefSeq:WP_007671274.1
COORDINATES: similar to AA sequence:RefSeq:WP_007671283.1
COORDINATES: similar to AA sequence:RefSeq:WP_008235530.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612253.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015431.2
LysR family transcriptional regulator substrate-binding protein
COORDINATES: protein motif:HMM:NF012354.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024740.2
COORDINATES: similar to AA sequence:RefSeq:WP_013652921.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400460.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598640.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598642.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652917.1
COORDINATES: protein motif:HMM:NF012904.2
COORDINATES: similar to AA sequence:RefSeq:WP_012179660.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_007005325.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007670769.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009603801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015494857.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014653.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_020573201.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017613185.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_013651303.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500459.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_011454660.1
COORDINATES: similar to AA sequence:RefSeq:WP_007118341.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495096.1
COORDINATES: similar to AA sequence:RefSeq:WP_015494728.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955838.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013961278.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014646912.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499645.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015493939.1