Thermococcus barophilus MP plasmid pTBMP1, complete sequence.
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.
Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP
Submitted (23-NOV-2010) Laboratoire de Microbiologie des Environnements Extremes, Universite de Bretagne Occidentale, Institut Universitaire Europeen de la Mer (IUEM), Technopole Brest-Iroise, Plouzane, Rhone 29280, France
Submitted (08-JUL-2008) J. Craig Venter Institute, 9704 Medical Center Dr., Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002373.1.\nSource DNA is available upon request from the authors.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/21/2022 09:11:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,282\nCDSs (total) :: 2,230\nGenes (coding) :: 2,214\nCDSs (with protein) :: 2,214\nGenes (RNA) :: 52\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 8 of 16\nPseudo Genes (incomplete) :: 10 of 16\nPseudo Genes (internal stop) :: 0 of 16\nPseudo Genes (multiple problems) :: 2 of 16\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014121597.1
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004067491.1
COORDINATES: similar to AA sequence:RefSeq:WP_010868635.1
COORDINATES: similar to AA sequence:RefSeq:WP_006421181.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011249647.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_010867164.1
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012571088.1
COORDINATES: similar to AA sequence:RefSeq:WP_008083348.1
COORDINATES: similar to AA sequence:RefSeq:WP_013749298.1
COORDINATES: protein motif:HMM:NF021352.2
COORDINATES: similar to AA sequence:RefSeq:WP_013906245.1
COORDINATES: similar to AA sequence:RefSeq:WP_013906246.1
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013906247.1
COORDINATES: similar to AA sequence:RefSeq:WP_013906248.1
COORDINATES: similar to AA sequence:RefSeq:WP_013906249.1
COORDINATES: similar to AA sequence:RefSeq:WP_013799524.1
COORDINATES: similar to AA sequence:RefSeq:WP_014733655.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011012459.1
COORDINATES: similar to AA sequence:RefSeq:WP_014835381.1
COORDINATES: similar to AA sequence:RefSeq:WP_011012455.1
COORDINATES: similar to AA sequence:RefSeq:WP_013747441.1
COORDINATES: similar to AA sequence:RefSeq:WP_014733656.1
COORDINATES: protein motif:HMM:NF022100.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF024319.2
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: similar to AA sequence:RefSeq:WP_014734130.1
COORDINATES: similar to AA sequence:RefSeq:WP_014123083.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013961.2
transglutaminase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014788911.1