Octadecabacter arcticus 238 plasmid pOA238_160, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Octadecabacter.
Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin
Poles apart: Extreme Genome Plasticity and a New Xanthorhodopsin-like Gene Family in the Genomes of Octadecabacter antarcticus 238 and O. antantarcticus 307
Submitted (14-FEB-2012) Genomic and Applied Microbiology, Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP003744.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 13:10:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,690\nCDSs (total) :: 5,638\nGenes (coding) :: 5,024\nCDSs (with protein) :: 5,024\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 614\nCDSs (without protein) :: 614\nPseudo Genes (ambiguous residues) :: 0 of 614\nPseudo Genes (frameshifted) :: 219 of 614\nPseudo Genes (incomplete) :: 402 of 614\nPseudo Genes (internal stop) :: 166 of 614\nPseudo Genes (multiple problems) :: 152 of 614\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012187063.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009504366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655382.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820068.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015497448.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005859468.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612253.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024940.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF014816.2
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015445.2
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_006915337.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: similar to AA sequence:RefSeq:WP_013959380.1
COORDINATES: similar to AA sequence:RefSeq:WP_007875036.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008562047.1
COORDINATES: similar to AA sequence:RefSeq:WP_020058008.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034761.1
cobalamin-independent methionine synthase II family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008230906.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442392.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009827984.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014875637.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500965.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019954202.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015496016.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230260.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_018516653.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008758611.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443169.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560481.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034771.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443165.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034775.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008230916.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209987.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015497751.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015493529.1
COORDINATES: similar to AA sequence:RefSeq:WP_008966714.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279657.1
succinate dehydrogenase iron-sulfur subunit
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018705711.1
COORDINATES: protein motif:HMM:NF024997.2
COORDINATES: similar to AA sequence:RefSeq:WP_015501195.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015497758.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501197.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499419.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019956954.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_007120932.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827310.1
helix-turn-helix transcriptional regulator
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612190.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: protein motif:HMM:NF024408.2
COORDINATES: similar to AA sequence:RefSeq:WP_032492267.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497767.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015494765.1
There are 14 genes on the gvp gene cluster in halophilic archaea. The product of gvpA is a structural component of gas vesicles, which provide buoyancy to cells and promote flotation. It has been reported that the products of gvpAO and gvpFGJKLM represent the minimal set required for gas vesicle formation in halophilic archaea; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015500564.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0031412 - gas vesicle organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500565.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390776.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500567.1
COORDINATES: protein motif:HMM:NF017603.2
COORDINATES: similar to AA sequence:RefSeq:WP_015500569.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500570.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500572.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500573.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500574.1
COORDINATES: similar to AA sequence:RefSeq:WP_018504834.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497795.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:NF025113.2
COORDINATES: similar to AA sequence:RefSeq:WP_015496444.1
COORDINATES: protein motif:HMM:NF006038.0
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_015497797.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_015496121.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495618.1
IS256-like element ISOan6 family transposase
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF013677.2
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008959428.1
COORDINATES: similar to AA sequence:RefSeq:WP_011463165.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012707217.1
COORDINATES: similar to AA sequence:RefSeq:WP_007236285.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496537.1
COORDINATES: similar to AA sequence:RefSeq:WP_010141449.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967736.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003527048.1
COORDINATES: similar to AA sequence:RefSeq:WP_008852493.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626096.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007196157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196158.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196159.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007196160.1
COORDINATES: similar to AA sequence:RefSeq:WP_018608571.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_007196162.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007196163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009464785.1
COORDINATES: similar to AA sequence:RefSeq:WP_004734435.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399539.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003527038.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010442809.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015495661.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_015500161.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496684.1
COORDINATES: similar to AA sequence:RefSeq:WP_018184293.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848490.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497444.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120198.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010854.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497823.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010852.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120194.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120193.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009042.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009041.1
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006931368.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015502016.1
COORDINATES: similar to AA sequence:RefSeq:WP_008182263.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008182265.1
COORDINATES: similar to AA sequence:RefSeq:WP_018149411.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121319.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018208417.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121259.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121258.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007121257.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812048.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121255.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851057.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611402.1
ISAs1-like element ISOan1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007692755.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF023713.2
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_015493784.1