Octadecabacter arcticus 238 plasmid pOA238_118, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Octadecabacter.
Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin
Poles apart: Extreme Genome Plasticity and a New Xanthorhodopsin-like Gene Family in the Genomes of Octadecabacter antarcticus 238 and O. antantarcticus 307
Submitted (14-FEB-2012) Genomic and Applied Microbiology, Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP003743.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 13:10:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,690\nCDSs (total) :: 5,638\nGenes (coding) :: 5,024\nCDSs (with protein) :: 5,024\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 614\nCDSs (without protein) :: 614\nPseudo Genes (ambiguous residues) :: 0 of 614\nPseudo Genes (frameshifted) :: 219 of 614\nPseudo Genes (incomplete) :: 402 of 614\nPseudo Genes (internal stop) :: 166 of 614\nPseudo Genes (multiple problems) :: 152 of 614\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_172685706.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015495018.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015493537.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808286.1
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497490.1
IS256-like element ISOan3 family transposase
COORDINATES: protein motif:HMM:NF024408.2
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015494728.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_015493606.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015493529.1
COORDINATES: similar to AA sequence:RefSeq:WP_009828520.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612188.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018633387.1
GO:0003824 - catalytic activity [Evidence IEA]
adenylyltransferase/cytidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006831742.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007206178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206181.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
flagellar biosynthesis anti-sigma factor FlgM
COORDINATES: similar to AA sequence:RefSeq:WP_015500512.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: similar to AA sequence:RefSeq:WP_007206184.1
flagellar assembly protein T N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015500515.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206186.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500517.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500518.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_015500520.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500522.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007206194.1
Arm DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015500525.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500544.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007206199.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500485.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206202.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_015500488.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007206204.1
COORDINATES: similar to AA sequence:RefSeq:WP_013045694.1
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: similar to AA sequence:RefSeq:WP_015500492.1
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008519901.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206209.1
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: similar to AA sequence:RefSeq:WP_007206211.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500497.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206213.1
COORDINATES: similar to AA sequence:RefSeq:WP_008519889.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500500.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_015500501.1
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_015500502.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015500503.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206220.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500505.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
FliA/WhiG family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015500506.1
COORDINATES: protein motif:HMM:NF040425.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_007203992.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206238.1
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500538.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009830895.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007206233.1
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015500535.1
flagellar hook-basal body complex protein
COORDINATES: similar to AA sequence:RefSeq:WP_007206231.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500533.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500532.1
flagellar basal body L-ring protein FlgH
COORDINATES: similar to AA sequence:RefSeq:WP_015500531.1
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_015500530.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206226.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500528.1
COORDINATES: protein motif:HMM:NF017736.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611402.1
ISAs1-like element ISOan1 family transposase
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_019463070.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501798.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611917.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516653.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_015496121.1
IS1595-like element ISOar1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012187139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187138.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015494988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556062.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009827370.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF025113.2
COORDINATES: similar to AA sequence:RefSeq:WP_015497751.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015498222.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983039.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011493834.1
COORDINATES: similar to AA sequence:RefSeq:WP_019641128.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015495875.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010505209.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911251.1
COORDINATES: similar to AA sequence:RefSeq:WP_006332417.1
COORDINATES: similar to AA sequence:RefSeq:WP_003611760.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497797.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015497134.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818721.1
COORDINATES: similar to AA sequence:RefSeq:WP_020174486.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007816639.1