Vigna radiata mitochondrion, complete genome.
type: Entry
definition: Vigna radiata mitochondrion, complete genome.
sequence version: NC_015121.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_015121.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Vigna radiata (mungbean)
organism: Vigna radiata
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna.
reference: 1
references: 21283772
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to HM367685.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 401262
topology: circular
so has quality: SO_0000988
location: 1..401262
location: region:1-401262:1
RO_0002162: 157791

NC_015121
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats
author: Alverson, A.J.
author: Zhuo, S.
author: Rice, D.W.
author: Sloan, D.B.
author: Palmer, J.D.
journal: PLoS ONE 6 (1), E16404 (2011)
pubmed: 21283772
comments: Publication Status: Online-Only

21283772
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (09-FEB-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Alverson, A.J.
author: Zhuo, S.
author: Palmer, J.D.
journal: Submitted (28-MAY-2010) Department of Biology, Indiana University, 1001 E Third Street, Bloomington, IN 47405, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401262:1
position: 401262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-401262:1:source
so part of: sequence
organism: Vigna radiata
organelle: mitochondrion
mol type: genomic DNA
common: mungbean

157791
type: Taxonomy
SIO_000068: taxonomy

ViraM_p11
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
trans splicing: true
so part of: sequence
location: complement(join(323339..324812,327461..327482,116224..118542))
location: region:116224-327482:-1
so has part: feature:116224-118542:-1:exon
so has part: feature:327461-327482:-1:exon
so has part: feature:323339-324812:-1:exon
subclass of: SO_0000010

10215554
type: Gene
SIO_000068: ncbigene

position:116224:-1
position: 116224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:327482:-1
position: 327482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116224-118542:-1:exon

position:118542:-1
position: 118542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:327461-327482:-1:exon

position:327461:-1
position: 327461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:323339-324812:-1:exon

position:323339:-1
position: 323339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324812:-1
position: 324812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViraM_p11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 5
translation: MYLLIVFLPLIGSSFAGFFGRFLGSEGSAIMTTTCVSFSSILSLIAFYEVAPGASACYLRIAPWISSEMFDASWGFLFDSPTVVMLIVVTSISSLVHLYSISYMSEDPHSPRFMCYLSILTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKAATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICILLLIGAVGKSAQIGSHTWSPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYPPTALIVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPFTYAMMLMGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRSLFLTFLVPTNSFGRDILRCHDAPIPMAIPLILLALGSLFVGYLAKDMMIGLGTNFWANSPFVLPKNEILAESEFAAPTITKLIPILFSTSGASVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRFGYEVSFEALDKGAIEILGPYGISYTFRRLAERISQLQSGFVYHYAFAMLLGSTLFVTFSRMWDSLSSWVDNRSSFILIVSSFFNNKSIIINKN
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(join(323339..323497,324418..324812,327461..327482,116224..117439,118313..118542))
location: region:116224-327482:-1
so has part: feature:118313-118542:-1:exon
so has part: feature:116224-117439:-1:exon
so has part: feature:327461-327482:-1:exon
so has part: feature:324418-324812:-1:exon
so has part: feature:323339-323497:-1:exon

YP_004222804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:118313-118542:-1:exon

position:118313:-1
position: 118313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:116224-117439:-1:exon

position:117439:-1
position: 117439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:327461-327482:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:324418-324812:-1:exon

position:324418:-1
position: 324418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:323339-323497:-1:exon

position:323497:-1
position: 323497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViraM_p01
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: cox1
locus tag: ViraM_p01
so part of: sequence
location: 1..1584
location: region:1-1584:1
so has part: feature:1-1584:1:exon
subclass of: SO_0000010

10215512
type: Gene
SIO_000068: ncbigene

position:1584:1
position: 1584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1584:1:exon

ViraM_p01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: cox1
locus tag: ViraM_p01
codon start: 1
product: cytochrome c oxidase subunit 1
translation: MTNPVRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGSGNWSVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDSAISSLHLSGVSSILGSINFITTISNMRGPGMTMHRSPLFVWSVPVTAFPLLLSLPVLAGAITMLLTDRNFNTTFSDPAGGGDPILYQHLFRFFGHPEVYIPILPGSGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFHYWVGKIFGRTYPETLGQIHFWITFFGVNLTLFPMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICRFFVVVTITSTSGNNITRANIPWAVEQNSTTLEWLVQSPPAFHTFGELPAIKETKSYVK
SIO_010081: ViraM_p01
subclass of: SO_0000673
so part of: ViraM_p01
location: 1..1584
location: region:1-1584:1
so has part: feature:1-1584:1:exon

YP_004222805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1584:1:exon

ViraM_p02
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
trans splicing: true
so part of: sequence
location: join(210936..211322,3044..4772,complement(62124..65589))
location: region:3044-211322:1
so has part: feature:210936-211322:1:exon
so has part: feature:3044-4772:1:exon
so has part: feature:62124-65589:-1:exon
subclass of: SO_0000010

10215553
type: Gene
SIO_000068: ncbigene

position:3044:1
position: 3044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211322:-1
position: 211322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210936-211322:1:exon

position:210936:1
position: 210936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211322:1
position: 211322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3044-4772:1:exon

position:4772:1
position: 4772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:62124-65589:-1:exon

position:62124:-1
position: 62124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65589:-1
position: 65589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViraM_p02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 1
translation: MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDSNIGLLYLFAISSLGVYGIITAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALFFLGEYANMILMSGPCTSLSPGGWPPILDLPIFKRIPGSIWFSIKVILFLFLYIWVRAAFPRYRYDQLMGLGRKVFLPLSLARVVAVSGVSVTFPWLP
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: join(210936..211322,3044..3124,4581..4772,complement(65531..65589),complement(62124..62382))
location: region:3044-211322:1
so has part: feature:210936-211322:1:exon
so has part: feature:3044-3124:1:exon
so has part: feature:4581-4772:1:exon
so has part: feature:65531-65589:-1:exon
so has part: feature:62124-62382:-1:exon

YP_004222803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210936-211322:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3044-3124:1:exon

position:3124:1
position: 3124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4581-4772:1:exon

position:4581:1
position: 4581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:65531-65589:-1:exon

position:65531:-1
position: 65531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:62124-62382:-1:exon

position:62382:-1
position: 62382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViraM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 2
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: 3044..3124
location: region:3044-3124:1
so has part: feature:3044-3124:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3044-3124:1:exon

ViraM_p02
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 1
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: 3125..4580
location: region:3125-4580:1
so has part: feature:3125-4580:1:exon

position:3125:1
position: 3125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4580:1
position: 4580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3125-4580:1:exon

ViraM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 3
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: 4581..4772
location: region:4581-4772:1
so has part: feature:4581-4772:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4581-4772:1:exon

ViraM_p03
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rps3
locus tag: ViraM_p03
so part of: sequence
location: 6309..9385
location: region:6309-9385:1
so has part: feature:6309-9385:1:exon
subclass of: SO_0000010

10215526
type: Gene
SIO_000068: ncbigene

position:6309:1
position: 6309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9385:1
position: 9385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6309-9385:1:exon

ViraM_p03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rps3
locus tag: ViraM_p03
codon start: 1
product: ribosomal protein S3
translation: MARKGNPISVRLDLNRSSDSSRFSDYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRRKKSRPGKEKGRWWAFGKVGPIGCLHSSDNTEEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKRKFFQFFFPKKSRSDGPTSHLFKRTLPAVRPSLNYSVMQYLLNRKNQMHFDPVVVLNHFVAPGVAEPSTMGGAKQGRGLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRFAGTTKTTISLFPFFGATFFFPRDRVGFYKNLSFEDAREPLLGQLRIKCCNLMGKDKVMELIEKFIDLGRIGEWIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASPIAQDISFQLRKKTRSFRSIFSRIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECGKYGKTSHNVFNQKIDYASAEVSTRYGISGVKVWISYSKKKKGGRAISETYEI
SIO_010081: ViraM_p03
subclass of: SO_0000673
so part of: ViraM_p03
location: join(6309..6382,7768..9385)
location: region:6309-9385:1
so has part: feature:6309-6382:1:exon
so has part: feature:7768-9385:1:exon

YP_004222806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6309-6382:1:exon

position:6382:1
position: 6382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7768-9385:1:exon

position:7768:1
position: 7768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: rps3
locus tag: ViraM_p03
number: 1
SIO_010081: ViraM_p03
subclass of: SO_0000673
so part of: ViraM_p03
location: 6309..6382
location: region:6309-6382:1
so has part: feature:6309-6382:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6309-6382:1:exon

ViraM_p03
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: rps3
locus tag: ViraM_p03
SIO_010081: ViraM_p03
subclass of: SO_0000673
so part of: ViraM_p03
location: 6383..7767
location: region:6383-7767:1
so has part: feature:6383-7767:1:exon

position:6383:1
position: 6383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7767:1
position: 7767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6383-7767:1:exon

ViraM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: rps3
locus tag: ViraM_p03
number: 2
SIO_010081: ViraM_p03
subclass of: SO_0000673
so part of: ViraM_p03
location: 7768..9385
location: region:7768-9385:1
so has part: feature:7768-9385:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7768-9385:1:exon

ViraM_p04
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rpl16
locus tag: ViraM_p04
so part of: sequence
location: 9273..9791
location: region:9273-9791:1
so has part: feature:9273-9791:1:exon
subclass of: SO_0000010

10215504
type: Gene
SIO_000068: ncbigene

position:9273:1
position: 9273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9791:1
position: 9791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9273-9791:1:exon

ViraM_p04
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rpl16
locus tag: ViraM_p04
codon start: 1
product: ribosomal protein L16
translation: MLLRKYLLVTESQVSKCGFHIVKKKKGDVLYPKRTKFSKYRKGICSRGCKPDGTKLGFGRYGTQSCRAGRLSYRAIEAARRAIIGHFHRAMSGQSRKNGKIWVRVFADIPITGKPTEVRMGRGKGNPTGWIARVSTGQVLFEMDGVSLSNARQAATLAAHKPCSSTKFVQWS
SIO_010081: ViraM_p04
subclass of: SO_0000673
so part of: ViraM_p04
location: 9273..9791
location: region:9273-9791:1
so has part: feature:9273-9791:1:exon

YP_004222807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9273-9791:1:exon

ViraM_p05
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: mttB
locus tag: ViraM_p05
so part of: sequence
location: 21332..22054
location: region:21332-22054:1
so has part: feature:21332-22054:1:exon
subclass of: SO_0000010

10215544
type: Gene
SIO_000068: ncbigene

position:21332:1
position: 21332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22054:1
position: 22054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21332-22054:1:exon

ViraM_p05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: mttB
locus tag: ViraM_p05
exception: RNA editing
codon start: 1
product: transport membrane protein
translation: MILGEVRIRSVRILIGLGLTWFTRYWFPEELISPLAKPFLTLSLDSYFVCTQSTEASPTYVATSSIACSYFVFPLISHQIWCFLIPSCYGEQRRKYNRFLYLSGSRFSLLLFLTLPRVVPNVWYFLYFVGATSTNSLMIKLQPKIYDHIMLTVRISFIPSVCSQVPVIVICLPEPRGLSVETLTNNRRFLMVFPLLTAALSTPPDIWCQIVARFLISSIIEFTIFVASIVQVREEAGRVE
SIO_010081: ViraM_p05
subclass of: SO_0000673
so part of: ViraM_p05
location: 21332..22054
location: region:21332-22054:1
so has part: feature:21332-22054:1:exon

YP_004222808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21332-22054:1:exon

ViraM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
gene: mttB
locus tag: ViraM_p05
note: C to U RNA editing; ACG(Thr) to ATG as start codon
SIO_010081: ViraM_p05
subclass of: SO_0000673
so part of: ViraM_p05
location: 21333
location: region:21333-21333:1
so has part: feature:21333-21333:1:exon

position:21333:1
position: 21333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21333-21333:1:exon

ViraM_p06
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: ccmFc
locus tag: ViraM_p06
so part of: sequence
location: 32693..38106
location: region:32693-38106:1
so has part: feature:32693-38106:1:exon
subclass of: SO_0000010

10215505
type: Gene
SIO_000068: ncbigene

position:32693:1
position: 32693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38106:1
position: 38106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32693-38106:1:exon

ViraM_p06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: ccmFc
locus tag: ViraM_p06
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis FC
translation: MVQLHNFFFFITSMVVPRGTAAPLLLKWFVSRDVPTGAPFSNGTIIPILIPSFPLLVYLHSRKFIRSMDGAKSGVLVRASRPILLPDIIGRSSSETRAGNASFRFVPVLHFLLIESKGDFSYLESFCGVLCLLFFRTLFSLPRDRSAKRERARRRKRQTLRPKPNGNEQQRNDKMGCSGHPHLERRVEGFWPVAFPVPPSSGGACVGGVPPEPEIGLEALALPTSRQLMAVGHDYHQKAPMKMNISHFGVCICMLGVLLSNTKKIQFTQRLPLGSELHMGKERCCFRGLDHLHGPTSHSICGNLMIYKPSLTNDRLMFEHDESLRADLLPINFPASYENGKLENFLHRWMKNREHKNFLLIMFPEKRYFRETTSTTEVAIHTNPFTDRYASIGTGSSRTGGWYTTIMKLPFLFFIRIGFMLASSGGSRSLLRQLQKDELRWN
SIO_010081: ViraM_p06
subclass of: SO_0000673
so part of: ViraM_p06
location: join(32693..33471,37557..38106)
location: region:32693-38106:1
so has part: feature:32693-33471:1:exon
so has part: feature:37557-38106:1:exon

YP_004222809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32693-33471:1:exon

position:33471:1
position: 33471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37557-38106:1:exon

position:37557:1
position: 37557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: ccmFc
locus tag: ViraM_p06
number: 1
SIO_010081: ViraM_p06
subclass of: SO_0000673
so part of: ViraM_p06
location: 32693..33471
location: region:32693-33471:1
so has part: feature:32693-33471:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32693-33471:1:exon

ViraM_p06
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: ccmFc
locus tag: ViraM_p06
SIO_010081: ViraM_p06
subclass of: SO_0000673
so part of: ViraM_p06
location: 33472..37556
location: region:33472-37556:1
so has part: feature:33472-37556:1:exon

position:33472:1
position: 33472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37556:1
position: 37556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33472-37556:1:exon

ViraM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: ccmFc
locus tag: ViraM_p06
number: 2
SIO_010081: ViraM_p06
subclass of: SO_0000673
so part of: ViraM_p06
location: 37557..38106
location: region:37557-38106:1
so has part: feature:37557-38106:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37557-38106:1:exon

ViraM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
gene: ccmFc
locus tag: ViraM_p06
note: C to U RNA editing; CGA(Arg) to TGA as stop codon
SIO_010081: ViraM_p06
subclass of: SO_0000673
so part of: ViraM_p06
location: 38104
location: region:38104-38104:1
so has part: feature:38104-38104:1:exon

position:38104:1
position: 38104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38104-38104:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
note: region of chloroplast-derived DNA
so part of: sequence
location: 40272..40870
location: region:40272-40870:1
so has part: feature:40272-40870:1:region

position:40272:1
position: 40272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40870:1
position: 40870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40272-40870:1:region

ViraM_t01
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnM-cp
locus tag: ViraM_t01
note: chloroplast-like; anticodon:CAT
so part of: sequence
location: complement(59016..59088)
location: region:59016-59088:-1
so has part: feature:59016-59088:-1:exon
subclass of: SO_0000663

10215506
type: Gene
SIO_000068: ncbigene

position:59016:-1
position: 59016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59088:-1
position: 59088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59016-59088:-1:exon

ViraM_t01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnM-cp
locus tag: ViraM_t01
product: tRNA-Met
SIO_010081: ViraM_t01
subclass of: SO_0000673
so part of: ViraM_t01
location: complement(59016..59088)
location: region:59016-59088:-1
so has part: feature:59016-59088:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59016-59088:-1:exon

ViraM_t02
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnE-TTC
locus tag: ViraM_t02
note: anticodon:TTC
so part of: sequence
location: complement(59974..60045)
location: region:59974-60045:-1
so has part: feature:59974-60045:-1:exon
subclass of: SO_0000663

10215507
type: Gene
SIO_000068: ncbigene

position:59974:-1
position: 59974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60045:-1
position: 60045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59974-60045:-1:exon

ViraM_t02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnE-TTC
locus tag: ViraM_t02
product: tRNA-Glu
SIO_010081: ViraM_t02
subclass of: SO_0000673
so part of: ViraM_t02
location: complement(59974..60045)
location: region:59974-60045:-1
so has part: feature:59974-60045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59974-60045:-1:exon

ViraM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 5
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: complement(62124..62382)
location: region:62124-62382:-1
so has part: feature:62124-62382:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:62124-62382:-1:exon

ViraM_p02
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 2
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: complement(62383..65530)
location: region:62383-65530:-1
so has part: feature:62383-65530:-1:exon

position:62383:-1
position: 62383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65530:-1
position: 65530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62383-65530:-1:exon

ViraM_p07
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: matR
locus tag: ViraM_p07
so part of: sequence
location: complement(62875..64884)
location: region:62875-64884:-1
so has part: feature:62875-64884:-1:exon
subclass of: SO_0000010

10215508
type: Gene
SIO_000068: ncbigene

position:62875:-1
position: 62875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64884:-1
position: 64884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62875-64884:-1:exon

ViraM_p07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: matR
locus tag: ViraM_p07
codon start: 1
product: maturase K
translation: MKEAIRMVLESIYDPEFPDTSHFRSGRGRYSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYSIHKVFSAGRLVGGEKGPYSVPHSVLLSALPGNIYLHKLDQEIGRIRQKYEIPRIRSVLLRTGRIDDQENSGEEASFNAPQDNRAIIVGRVKSIQRKAAFHSLVSSWHTPPTSTPRRRGDQKTPFVFPPSSALAAFLNKPSSLLCAAFLIEAAGLTPKAEFYGRECFSYNNWAMRDLIKYCKRKGLLIELGGEARLVIRSERGLARKPAPFKKKNHSFIRICYVRYADDLLLGIVGAVELLIEIQKRIAHFLQSGLNLWVGSAGSTTIAARSTVEFPGTVIREVPPRTTPMQFLRELEKRLRVKHRIHITVCHLRSAIHSKFRNLGNSLPIKQLTKGMSETGSLLDGVPLAETLGTAGVRSPQVSVLWGTVQHIWQGSRGISLLHSSGRSNAPSDVQEAVARSGMSVRKLSLYTPAGRKAAGEGGGHWAGSISSEFPIQIEAPIKKILRRLRDRGIISRRRPWPIHVACLTNVSDGDIVNWSAGIAISPLSYYRCRDNLYQVRTIVDHQIRWSAIFTLAHKHKSSARNIIPKYSKDSNIVNQEGGKTLAEFPNSIELGKLGPGQDPNNKEHSTTSLVVFFLLVAMRTGVYL
SIO_010081: ViraM_p07
subclass of: SO_0000673
so part of: ViraM_p07
location: complement(62875..64884)
location: region:62875-64884:-1
so has part: feature:62875-64884:-1:exon

YP_004222810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62875-64884:-1:exon

ViraM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 4
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: complement(65531..65589)
location: region:65531-65589:-1
so has part: feature:65531-65589:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:65531-65589:-1:exon

ViraM_t03
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnI-CAT
locus tag: ViraM_t03
so part of: sequence
location: 68936..69017
location: region:68936-69017:1
so has part: feature:68936-69017:1:exon
subclass of: SO_0000663

10215509
type: Gene
SIO_000068: ncbigene

position:68936:1
position: 68936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69017:1
position: 69017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68936-69017:1:exon

ViraM_t03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnI-CAT
locus tag: ViraM_t03
product: tRNA-Ile
note: anticodon:CAT; C assumed to be post-transcriptionally modified to lysidine, which pairs with A, not G (see PubMed ID 1698276)
SIO_010081: ViraM_t03
subclass of: SO_0000673
so part of: ViraM_t03
location: 68936..69017
location: region:68936-69017:1
so has part: feature:68936-69017:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68936-69017:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
note: region of chloroplast-derived DNA
so part of: sequence
location: 81289..82475
location: region:81289-82475:1
so has part: feature:81289-82475:1:region

position:81289:1
position: 81289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82475:1
position: 82475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81289-82475:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
note: intact chloroplast-like trnD embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(82009..82082)
location: region:82009-82082:-1
so has part: feature:82009-82082:-1:region

position:82009:-1
position: 82009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82082:-1
position: 82082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82009-82082:-1:region

ViraM_p08
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
so part of: sequence
location: 84047..92725
location: region:84047-92725:1
so has part: feature:84047-92725:1:exon
subclass of: SO_0000010

10215510
type: Gene
SIO_000068: ncbigene

position:84047:1
position: 84047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92725:1
position: 92725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84047-92725:1:exon

ViraM_p08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
codon start: 1
product: NADH dehydrogenase subunit 4
translation: MLEHFCECYSDLSGPILCPVLGSIIPIFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDPSTAKSQFVESLRWLPYENINLNLGIDGLSFFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILFQTGTADLQISLTTEFSERRQIFLWIASFAAFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPSKLGTHGFLRFSIPMFPEATLCSTPFIYTPSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSIPPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTISFSSTLANMSSPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKADFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDRMHTYVSNLVQHGKFN
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: join(84047..84507,85919..86433,89672..90094,92637..92725)
location: region:84047-92725:1
so has part: feature:84047-84507:1:exon
so has part: feature:85919-86433:1:exon
so has part: feature:89672-90094:1:exon
so has part: feature:92637-92725:1:exon

YP_004222811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84047-84507:1:exon

position:84507:1
position: 84507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:85919-86433:1:exon

position:85919:1
position: 85919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86433:1
position: 86433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:89672-90094:1:exon

position:89672:1
position: 89672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90094:1
position: 90094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:92637-92725:1:exon

position:92637:1
position: 92637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 1
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 84047..84507
location: region:84047-84507:1
so has part: feature:84047-84507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84047-84507:1:exon

ViraM_p08
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 1
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 84508..85918
location: region:84508-85918:1
so has part: feature:84508-85918:1:exon

position:84508:1
position: 84508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85918:1
position: 85918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84508-85918:1:exon

ViraM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 2
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 85919..86433
location: region:85919-86433:1
so has part: feature:85919-86433:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85919-86433:1:exon

ViraM_p08
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 2
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 86434..89671
location: region:86434-89671:1
so has part: feature:86434-89671:1:exon

position:86434:1
position: 86434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89671:1
position: 89671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86434-89671:1:exon

ViraM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 3
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 89672..90094
location: region:89672-90094:1
so has part: feature:89672-90094:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:89672-90094:1:exon

ViraM_p08
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 3
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 90095..92636
location: region:90095-92636:1
so has part: feature:90095-92636:1:exon

position:90095:1
position: 90095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92636:1
position: 92636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90095-92636:1:exon

ViraM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad4
locus tag: ViraM_p08
number: 4
SIO_010081: ViraM_p08
subclass of: SO_0000673
so part of: ViraM_p08
location: 92637..92725
location: region:92637-92725:1
so has part: feature:92637-92725:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:92637-92725:1:exon

ViraM_p09
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
trans splicing: true
so part of: sequence
location: join(complement(192273..194064),93902..98853)
location: region:93902-194064:1
so has part: feature:192273-194064:-1:exon
so has part: feature:93902-98853:1:exon
subclass of: SO_0000010

10215503
type: Gene
SIO_000068: ncbigene

position:93902:1
position: 93902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:194064:-1
position: 194064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: ReverseStrandPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192273-194064:-1:exon

position:192273:-1
position: 192273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:93902-98853:1:exon

position:98853:1
position: 98853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p09
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 2
translation: MFNLFLAVYPEIFIINATSILLIHGVVFSTSKKYDYPPLVSNVGWLGLLSVLITLLLLAAGAPLLTIAHLFRNNLFRRDNFTYFCQILLLLSTAGTISMCFDSSEQERFDAFEFIVLIPLPTRSMLFMISAHDSIAMYLAIEPQSLCFYVMAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGSLFKITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANISRVSIYGSYGATLQQIFCFCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYVGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGCFYYIRLAKRMFFDTPRTWILYEPMDRDKSLLLAMTSSFITSSFPYPSPLFSVTHQMALSSYL
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: join(complement(193912..194064),complement(192273..192664),93902..94062,96616..97187,98665..98853)
location: region:93902-194064:1
so has part: feature:193912-194064:-1:exon
so has part: feature:192273-192664:-1:exon
so has part: feature:93902-94062:1:exon
so has part: feature:96616-97187:1:exon
so has part: feature:98665-98853:1:exon

YP_004222802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:193912-194064:-1:exon

position:193912:-1
position: 193912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:192273-192664:-1:exon

position:192664:-1
position: 192664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:93902-94062:1:exon

position:94062:1
position: 94062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:96616-97187:1:exon

position:96616:1
position: 96616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97187:1
position: 97187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:98665-98853:1:exon

position:98665:1
position: 98665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 3
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: 93902..94062
location: region:93902-94062:1
so has part: feature:93902-94062:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:93902-94062:1:exon

ViraM_p09
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 3
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: 94063..96615
location: region:94063-96615:1
so has part: feature:94063-96615:1:exon

position:94063:1
position: 94063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96615:1
position: 96615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94063-96615:1:exon

ViraM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 4
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: 96616..97187
location: region:96616-97187:1
so has part: feature:96616-97187:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96616-97187:1:exon

ViraM_p09
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 4
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: 97188..98664
location: region:97188-98664:1
so has part: feature:97188-98664:1:exon

position:97188:1
position: 97188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98664:1
position: 98664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97188-98664:1:exon

ViraM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 5
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: 98665..98853
location: region:98665-98853:1
so has part: feature:98665-98853:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98665-98853:1:exon

ViraM_p10
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: atp9-1
locus tag: ViraM_p10
so part of: sequence
location: complement(111345..111569)
location: region:111345-111569:-1
so has part: feature:111345-111569:-1:exon
subclass of: SO_0000010

10215524
type: Gene
SIO_000068: ncbigene

position:111345:-1
position: 111345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111569:-1
position: 111569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111345-111569:-1:exon

ViraM_p10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: atp9-1
locus tag: ViraM_p10
codon start: 1
product: ATPase subunit 9
translation: MLEGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMAFLILFVF
SIO_010081: ViraM_p10
subclass of: SO_0000673
so part of: ViraM_p10
location: complement(111345..111569)
location: region:111345-111569:-1
so has part: feature:111345-111569:-1:exon

YP_004222812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111345-111569:-1:exon

ViraM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 2
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(116224..117439)
location: region:116224-117439:-1
so has part: feature:116224-117439:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116224-117439:-1:exon

ViraM_p11
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 1
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(117440..118312)
location: region:117440-118312:-1
so has part: feature:117440-118312:-1:exon

position:117440:-1
position: 117440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118312:-1
position: 118312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117440-118312:-1:exon

ViraM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 1
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(118313..118542)
location: region:118313-118542:-1
so has part: feature:118313-118542:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:118313-118542:-1:exon

ViraM_p12
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rps1
locus tag: ViraM_p12
so part of: sequence
location: complement(118742..119365)
location: region:118742-119365:-1
so has part: feature:118742-119365:-1:exon
subclass of: SO_0000010

10215511
type: Gene
SIO_000068: ncbigene

position:118742:-1
position: 118742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119365:-1
position: 119365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118742-119365:-1:exon

ViraM_p12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rps1
locus tag: ViraM_p12
codon start: 1
product: ribosomal protein S1
translation: MSIYLSRSFQRSNSSLFLCSGKALQSEVLRLGEEMFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKKKILERLFIDLVAGESLIKERAAARFNDLVGSTDVVAGEPLLLPRRFRQNLAWMELNKIWRRNTKVKGFLLQKVKGGYSVAIAGFITFISFRSHNKRRRKKKKRLNNRFTIKSIHPTRKKTNIVVF
SIO_010081: ViraM_p12
subclass of: SO_0000673
so part of: ViraM_p12
location: complement(118742..119365)
location: region:118742-119365:-1
so has part: feature:118742-119365:-1:exon

YP_004222813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:118742-119365:-1:exon

ViraM_r01
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rrn5
locus tag: ViraM_r01
so part of: sequence
location: complement(123134..123249)
location: region:123134-123249:-1
so has part: feature:123134-123249:-1:exon
subclass of: SO_0000573

10215546
type: Gene
SIO_000068: ncbigene

position:123134:-1
position: 123134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123249:-1
position: 123249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123134-123249:-1:exon

ViraM_r01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 157791
gene: rrn5
locus tag: ViraM_r01
product: 5S ribosomal RNA
SIO_010081: ViraM_r01
subclass of: SO_0000673
so part of: ViraM_r01
location: complement(123134..123249)
location: region:123134-123249:-1
so has part: feature:123134-123249:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:123134-123249:-1:exon

ViraM_r02
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rrnS
locus tag: ViraM_r02
so part of: sequence
location: complement(123416..125413)
location: region:123416-125413:-1
so has part: feature:123416-125413:-1:exon
subclass of: SO_0000573

10215513
type: Gene
SIO_000068: ncbigene

position:123416:-1
position: 123416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125413:-1
position: 125413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123416-125413:-1:exon

ViraM_r02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 157791
gene: rrnS
locus tag: ViraM_r02
product: small subunit ribosomal RNA
SIO_010081: ViraM_r02
subclass of: SO_0000673
so part of: ViraM_r02
location: complement(123416..125413)
location: region:123416-125413:-1
so has part: feature:123416-125413:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:123416-125413:-1:exon

ViraM_t04
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnW-cp
locus tag: ViraM_t04
note: chloroplast-like; anticodon:CCA
so part of: sequence
location: complement(127177..127250)
location: region:127177-127250:-1
so has part: feature:127177-127250:-1:exon
subclass of: SO_0000663

10215514
type: Gene
SIO_000068: ncbigene

position:127177:-1
position: 127177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127250:-1
position: 127250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127177-127250:-1:exon

ViraM_t04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnW-cp
locus tag: ViraM_t04
product: tRNA-Trp
SIO_010081: ViraM_t04
subclass of: SO_0000673
so part of: ViraM_t04
location: complement(127177..127250)
location: region:127177-127250:-1
so has part: feature:127177-127250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127177-127250:-1:exon

ViraM_p13
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: cob
locus tag: ViraM_p13
so part of: sequence
location: complement(141130..142311)
location: region:141130-142311:-1
so has part: feature:141130-142311:-1:exon
subclass of: SO_0000010

10215515
type: Gene
SIO_000068: ncbigene

position:141130:-1
position: 141130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142311:-1
position: 142311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141130-142311:-1:exon

ViraM_p13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: cob
locus tag: ViraM_p13
codon start: 1
product: apocytochrome b
translation: MTIRNQRFSLLKEPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFLIVVHLHIFRGLYHASYSSPREFVRCLGVVIFLLMIVTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFLLVGASLLHLAALHQYGSNNPLGVHSEMDQISFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMPTPPHIVPEWYFLPIHAILRSIPDKSGGVAAIAPVFICLLALPFFKSMYVRSSSFRPIHQGIFWLLLADRLLLGWIGCQPVEAPFVTIGQIPPFVFFLFFAITPIPGRVGRGIPNSYTTDETEM
SIO_010081: ViraM_p13
subclass of: SO_0000673
so part of: ViraM_p13
location: complement(141130..142311)
location: region:141130-142311:-1
so has part: feature:141130-142311:-1:exon

YP_004222814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:141130-142311:-1:exon

ViraM_p14
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rps14
locus tag: ViraM_p14
so part of: sequence
location: complement(143206..143508)
location: region:143206-143508:-1
so has part: feature:143206-143508:-1:exon
subclass of: SO_0000010

10215516
type: Gene
SIO_000068: ncbigene

position:143206:-1
position: 143206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143508:-1
position: 143508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143206-143508:-1:exon

ViraM_p14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rps14
locus tag: ViraM_p14
codon start: 1
product: ribosomal protein S14
translation: MSEKRNIRDNKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNRCISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW
SIO_010081: ViraM_p14
subclass of: SO_0000673
so part of: ViraM_p14
location: complement(143206..143508)
location: region:143206-143508:-1
so has part: feature:143206-143508:-1:exon

YP_004222815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:143206-143508:-1:exon

ViraM_p15
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rpl5
locus tag: ViraM_p15
so part of: sequence
location: complement(143512..144069)
location: region:143512-144069:-1
so has part: feature:143512-144069:-1:exon
subclass of: SO_0000010

10215548
type: Gene
SIO_000068: ncbigene

position:143512:-1
position: 143512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144069:-1
position: 144069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143512-144069:-1:exon

ViraM_p15
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rpl5
locus tag: ViraM_p15
codon start: 1
product: ribosomal protein L5
translation: MFPLHFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSKKDKGYVSDLARQSTLRGHGMSHFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ
SIO_010081: ViraM_p15
subclass of: SO_0000673
so part of: ViraM_p15
location: complement(143512..144069)
location: region:143512-144069:-1
so has part: feature:143512-144069:-1:exon

YP_004222816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:143512-144069:-1:exon

ViraM_t05
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnfM-1
locus tag: ViraM_t05
so part of: sequence
location: complement(148951..149024)
location: region:148951-149024:-1
so has part: feature:148951-149024:-1:exon
subclass of: SO_0000663

10215545
type: Gene
SIO_000068: ncbigene

position:148951:-1
position: 148951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149024:-1
position: 149024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148951-149024:-1:exon

ViraM_t05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnfM-1
locus tag: ViraM_t05
product: tRNA-Met
SIO_010081: ViraM_t05
subclass of: SO_0000673
so part of: ViraM_t05
location: complement(148951..149024)
location: region:148951-149024:-1
so has part: feature:148951-149024:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:148951-149024:-1:exon

ViraM_r03
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rrnL
locus tag: ViraM_r03
so part of: sequence
location: complement(149430..152573)
location: region:149430-152573:-1
so has part: feature:149430-152573:-1:exon
subclass of: SO_0000573

10215517
type: Gene
SIO_000068: ncbigene

position:149430:-1
position: 149430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152573:-1
position: 152573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149430-152573:-1:exon

ViraM_r03
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 157791
gene: rrnL
locus tag: ViraM_r03
product: large subunit ribosomal RNA
SIO_010081: ViraM_r03
subclass of: SO_0000673
so part of: ViraM_r03
location: complement(149430..152573)
location: region:149430-152573:-1
so has part: feature:149430-152573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:149430-152573:-1:exon

ViraM_t06
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnfM-2
locus tag: ViraM_t06
so part of: sequence
location: 161703..161774
location: region:161703-161774:1
so has part: feature:161703-161774:1:exon
subclass of: SO_0000663

10215518
type: Gene
SIO_000068: ncbigene

position:161703:1
position: 161703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161774:1
position: 161774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161703-161774:1:exon

ViraM_t06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnfM-2
locus tag: ViraM_t06
product: tRNA-Met
SIO_010081: ViraM_t06
subclass of: SO_0000673
so part of: ViraM_t06
location: 161703..161774
location: region:161703-161774:1
so has part: feature:161703-161774:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:161703-161774:1:exon

ViraM_t07
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnN-cp
locus tag: ViraM_t07
note: chloroplast-like; anticodon:GTT
so part of: sequence
location: 164234..164305
location: region:164234-164305:1
so has part: feature:164234-164305:1:exon
subclass of: SO_0000663

10215519
type: Gene
SIO_000068: ncbigene

position:164234:1
position: 164234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164305:1
position: 164305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164234-164305:1:exon

ViraM_t07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnN-cp
locus tag: ViraM_t07
product: tRNA-Asn
SIO_010081: ViraM_t07
subclass of: SO_0000673
so part of: ViraM_t07
location: 164234..164305
location: region:164234-164305:1
so has part: feature:164234-164305:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:164234-164305:1:exon

ViraM_t08
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnY-GTA
locus tag: ViraM_t08
note: anticodon:GTA
so part of: sequence
location: 164684..164766
location: region:164684-164766:1
so has part: feature:164684-164766:1:exon
subclass of: SO_0000663

10215520
type: Gene
SIO_000068: ncbigene

position:164684:1
position: 164684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164766:1
position: 164766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164684-164766:1:exon

ViraM_t08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnY-GTA
locus tag: ViraM_t08
product: tRNA-Tyr
SIO_010081: ViraM_t08
subclass of: SO_0000673
so part of: ViraM_t08
location: 164684..164766
location: region:164684-164766:1
so has part: feature:164684-164766:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:164684-164766:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
note: region of chloroplast-derived DNA
so part of: sequence
location: 169146..169452
location: region:169146-169452:1
so has part: feature:169146-169452:1:region

position:169146:1
position: 169146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169452:1
position: 169452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169146-169452:1:region

ViraM_t09
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnF-GAA
locus tag: ViraM_t09
note: anticodon:GAA
so part of: sequence
location: 185448..185521
location: region:185448-185521:1
so has part: feature:185448-185521:1:exon
subclass of: SO_0000663

10215521
type: Gene
SIO_000068: ncbigene

position:185448:1
position: 185448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185521:1
position: 185521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185448-185521:1:exon

ViraM_t09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnF-GAA
locus tag: ViraM_t09
product: tRNA-Phe
SIO_010081: ViraM_t09
subclass of: SO_0000673
so part of: ViraM_t09
location: 185448..185521
location: region:185448-185521:1
so has part: feature:185448-185521:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:185448-185521:1:exon

ViraM_t10
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnP-TGG
locus tag: ViraM_t10
note: anticodon:TGG
so part of: sequence
location: 185780..185854
location: region:185780-185854:1
so has part: feature:185780-185854:1:exon
subclass of: SO_0000663

10215522
type: Gene
SIO_000068: ncbigene

position:185780:1
position: 185780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185854:1
position: 185854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185780-185854:1:exon

ViraM_t10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnP-TGG
locus tag: ViraM_t10
product: tRNA-Pro
SIO_010081: ViraM_t10
subclass of: SO_0000673
so part of: ViraM_t10
location: 185780..185854
location: region:185780-185854:1
so has part: feature:185780-185854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:185780-185854:1:exon

ViraM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 2
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: complement(192273..192664)
location: region:192273-192664:-1
so has part: feature:192273-192664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:192273-192664:-1:exon

ViraM_p09
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 1
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: complement(192665..193911)
location: region:192665-193911:-1
so has part: feature:192665-193911:-1:exon

position:192665:-1
position: 192665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193911:-1
position: 193911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192665-193911:-1:exon

ViraM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad2
locus tag: ViraM_p09
number: 1
SIO_010081: ViraM_p09
subclass of: SO_0000673
so part of: ViraM_p09
location: complement(193912..194064)
location: region:193912-194064:-1
so has part: feature:193912-194064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:193912-194064:-1:exon

ViraM_p16
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: ccmB
locus tag: ViraM_p16
so part of: sequence
location: 209628..210248
location: region:209628-210248:1
so has part: feature:209628-210248:1:exon
subclass of: SO_0000010

10215523
type: Gene
SIO_000068: ncbigene

position:209628:1
position: 209628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210248:1
position: 210248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209628-210248:1:exon

ViraM_p16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: ccmB
locus tag: ViraM_p16
codon start: 1
product: cytochrome c biogenesis B
translation: MRRLFLELYNKKIFPSTPITSFSPFLSYIVVTPLILGFEKDFSCHSHLGPIRIPSLFSFPPAPFPRNEKEDGTLEFYYLSAYCLPKILLLQLVGHRVLQISCVFCGFPMLQLPYQFGRSGMDRLNIPSGSLVFTLLCGIHSRLALGITSGSGGNSSQNPTTSPTSLPPTVSRTSIETEWFHVISSIGYSSPFVSLFPIAVSMSLQD
SIO_010081: ViraM_p16
subclass of: SO_0000673
so part of: ViraM_p16
location: 209628..210248
location: region:209628-210248:1
so has part: feature:209628-210248:1:exon

YP_004222817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:209628-210248:1:exon

ViraM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
number: 1
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: 210936..211322
location: region:210936-211322:1
so has part: feature:210936-211322:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:210936-211322:1:exon

ViraM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
gene: nad1
locus tag: ViraM_p02
note: C to U RNA editing; ACG(Thr) to ATG as start codon
SIO_010081: ViraM_p02
subclass of: SO_0000673
so part of: ViraM_p02
location: 210937
location: region:210937-210937:1
so has part: feature:210937-210937:1:exon

position:210937:1
position: 210937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210937-210937:1:exon

ViraM_p17
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad6
locus tag: ViraM_p17
so part of: sequence
location: 214657..215274
location: region:214657-215274:1
so has part: feature:214657-215274:1:exon
subclass of: SO_0000010

10215525
type: Gene
SIO_000068: ncbigene

position:214657:1
position: 214657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215274:1
position: 215274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214657-215274:1:exon

ViraM_p17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad6
locus tag: ViraM_p17
codon start: 1
product: NADH dehydrogenase subunit 6
translation: MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQINTTSLIYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFRRTIMRRTTDPLTID
SIO_010081: ViraM_p17
subclass of: SO_0000673
so part of: ViraM_p17
location: 214657..215274
location: region:214657-215274:1
so has part: feature:214657-215274:1:exon

YP_004222818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214657-215274:1:exon

ViraM_p18
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: atp6
locus tag: ViraM_p18
so part of: sequence
location: complement(231376..232101)
location: region:231376-232101:-1
so has part: feature:231376-232101:-1:exon
subclass of: SO_0000010

10215542
type: Gene
SIO_000068: ncbigene

position:231376:-1
position: 231376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232101:-1
position: 232101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231376-232101:-1:exon

ViraM_p18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: atp6
locus tag: ViraM_p18
codon start: 1
product: ATPase subunit 6
translation: MDMKIGDLYFSFTNPSLFMLLTLSLVLLLFHFVTKNGGGKSVPNAWQSLVELIYDFVPNLVNEQIAGNVKQKFFPCILVTFTFSLFCNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFSLPAGVPLPLAPFLVLLELIPHCFRALSSGIRLFANMMAGHSSVKILSGSAWTMLCMNDLFYFIGDLGPLFIVLALTGPELGVAISQAHVSTISICIYLNDATNLHQTG
SIO_010081: ViraM_p18
subclass of: SO_0000673
so part of: ViraM_p18
location: complement(231376..232101)
location: region:231376-232101:-1
so has part: feature:231376-232101:-1:exon

YP_004222819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231376-232101:-1:exon

ViraM_p19
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad9
locus tag: ViraM_p19
so part of: sequence
location: complement(234173..234745)
location: region:234173-234745:-1
so has part: feature:234173-234745:-1:exon
subclass of: SO_0000010

10215527
type: Gene
SIO_000068: ncbigene

position:234173:-1
position: 234173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234745:-1
position: 234745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234173-234745:-1:exon

ViraM_p19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad9
locus tag: ViraM_p19
codon start: 1
product: NADH dehydrogenase subunit 9
translation: MDNQSIFKYSWETLPKKWVKKMERSEHGNRSDTKTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQRSDG
SIO_010081: ViraM_p19
subclass of: SO_0000673
so part of: ViraM_p19
location: complement(234173..234745)
location: region:234173-234745:-1
so has part: feature:234173-234745:-1:exon

YP_004222820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:234173-234745:-1:exon

ViraM_t11
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnK-TTT
locus tag: ViraM_t11
note: anticodon:TTT
so part of: sequence
location: 243310..243382
location: region:243310-243382:1
so has part: feature:243310-243382:1:exon
subclass of: SO_0000663

10215543
type: Gene
SIO_000068: ncbigene

position:243310:1
position: 243310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243382:1
position: 243382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243310-243382:1:exon

ViraM_t11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnK-TTT
locus tag: ViraM_t11
product: tRNA-Lys
SIO_010081: ViraM_t11
subclass of: SO_0000673
so part of: ViraM_t11
location: 243310..243382
location: region:243310-243382:1
so has part: feature:243310-243382:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:243310-243382:1:exon

ViraM_p20
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rps4
locus tag: ViraM_p20
so part of: sequence
location: complement(257554..258594)
location: region:257554-258594:-1
so has part: feature:257554-258594:-1:exon
subclass of: SO_0000010

10215528
type: Gene
SIO_000068: ncbigene

position:257554:-1
position: 257554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258594:-1
position: 258594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257554-258594:-1:exon

ViraM_p20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rps4
locus tag: ViraM_p20
codon start: 1
product: ribosomal protein S4
translation: MRFKTCRLLSGNVRNRELTIIQRRVLRRLRNKKRSLKRKISPRKNMNSYIQSQTTRKLPLFHADLPITEMHRGTERTSYIPLILNPETRSDVIPVRLHFRETLPQARQPISHRRVCVNNRIVSITRLKVSHGDLISFQENDARIRGEEIRRSFYIEISVDKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKSRFLQQQLRYSMQEEYLERTKKFGSEKVCLGSSFAEHNRMKRDLYHFKSLFLSKRRNEKNQDLPTRTRSPLVYNSSLYSNSTYCSSSPHPFPRKRRIKRIELPTHYSEVNHRTPKAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
SIO_010081: ViraM_p20
subclass of: SO_0000673
so part of: ViraM_p20
location: complement(257554..258594)
location: region:257554-258594:-1
so has part: feature:257554-258594:-1:exon

YP_004222821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:257554-258594:-1:exon

ViraM_t12
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnC-GCA-1
locus tag: ViraM_t12
note: anticodon:GCA
so part of: sequence
location: 274499..274571
location: region:274499-274571:1
so has part: feature:274499-274571:1:exon
subclass of: SO_0000663

10215549
type: Gene
SIO_000068: ncbigene

position:274499:1
position: 274499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:274571:1
position: 274571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274499-274571:1:exon

ViraM_t12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnC-GCA-1
locus tag: ViraM_t12
product: tRNA-Cys
SIO_010081: ViraM_t12
subclass of: SO_0000673
so part of: ViraM_t12
location: 274499..274571
location: region:274499-274571:1
so has part: feature:274499-274571:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:274499-274571:1:exon

ViraM_t13
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnH-cp
locus tag: ViraM_t13
note: chloroplast-like; anticodon:GTG
so part of: sequence
location: complement(276304..276377)
location: region:276304-276377:-1
so has part: feature:276304-276377:-1:exon
subclass of: SO_0000663

10215529
type: Gene
SIO_000068: ncbigene

position:276304:-1
position: 276304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276377:-1
position: 276377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276304-276377:-1:exon

ViraM_t13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnH-cp
locus tag: ViraM_t13
product: tRNA-His
SIO_010081: ViraM_t13
subclass of: SO_0000673
so part of: ViraM_t13
location: complement(276304..276377)
location: region:276304-276377:-1
so has part: feature:276304-276377:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:276304-276377:-1:exon

ViraM_p21
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: ccmC
locus tag: ViraM_p21
so part of: sequence
location: 287687..288427
location: region:287687-288427:1
so has part: feature:287687-288427:1:exon
subclass of: SO_0000010

10215530
type: Gene
SIO_000068: ncbigene

position:287687:1
position: 287687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:288427:1
position: 288427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287687-288427:1:exon

ViraM_p21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: ccmC
locus tag: ViraM_p21
codon start: 1
product: cytochrome c biogenesis C
translation: MSLSLLQPSFLMSKTRSYALILIGSRLFLTAMAIHFSLRVAPLDLQQGGNSRILYVHVPAARMSILVYIATAINTFLFLLTKHPLSLRSSGTGTEMGAFFTLFTLVTGGFRGRPMWGTFWVWDARLTSVFISFLIYLGALRFQKLPVEPAPISIRAGPIDIPIIKSSVNWWNTLHQPGSISRSGTSIHVPMPIPILSNFANFPLSTRILFVLETRLPILSFPESPLRDEIEAREGIAKPSLLPSSN
SIO_010081: ViraM_p21
subclass of: SO_0000673
so part of: ViraM_p21
location: 287687..288427
location: region:287687-288427:1
so has part: feature:287687-288427:1:exon

YP_004222822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:287687-288427:1:exon

ViraM_t14
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnQ-TTG
locus tag: ViraM_t14
note: anticodon:TTG
so part of: sequence
location: complement(296999..297070)
location: region:296999-297070:-1
so has part: feature:296999-297070:-1:exon
subclass of: SO_0000663

10215531
type: Gene
SIO_000068: ncbigene

position:296999:-1
position: 296999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:297070:-1
position: 297070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296999-297070:-1:exon

ViraM_t14
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnQ-TTG
locus tag: ViraM_t14
product: tRNA-Gln
SIO_010081: ViraM_t14
subclass of: SO_0000673
so part of: ViraM_t14
location: complement(296999..297070)
location: region:296999-297070:-1
so has part: feature:296999-297070:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:296999-297070:-1:exon

ViraM_t15
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnG-GCC
locus tag: ViraM_t15
note: anticodon:GCC
so part of: sequence
location: complement(300851..300922)
location: region:300851-300922:-1
so has part: feature:300851-300922:-1:exon
subclass of: SO_0000663

10215532
type: Gene
SIO_000068: ncbigene

position:300851:-1
position: 300851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300922:-1
position: 300922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300851-300922:-1:exon

ViraM_t15
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnG-GCC
locus tag: ViraM_t15
product: tRNA-Gly
SIO_010081: ViraM_t15
subclass of: SO_0000673
so part of: ViraM_t15
location: complement(300851..300922)
location: region:300851-300922:-1
so has part: feature:300851-300922:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:300851-300922:-1:exon

ViraM_p22
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: ccmFn
locus tag: ViraM_p22
so part of: sequence
location: 312130..313866
location: region:312130-313866:1
so has part: feature:312130-313866:1:exon
subclass of: SO_0000010

10215533
type: Gene
SIO_000068: ncbigene

position:312130:1
position: 312130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313866:1
position: 313866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312130-313866:1:exon

ViraM_p22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: ccmFn
locus tag: ViraM_p22
codon start: 1
product: cytochrome c biogenesis FN
translation: MSIIYEFFHLSLFPGLFVAFTYNKKQPPAFGAAPAFWCILLSFLGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIPRFYGFLLCYRGRPQSHNVSKRGGHREVLYYFVSNFVKNSILSLPRYEQKSGAAPQLYTPFVLRTLVDSELRSRRNRTFDGPALFYAPLYPERKMSLAPLGARRSRGSREGKRRTHPLLHLARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVPQDPISAIHPPCIYAGDVASAMGFGLCRSKMMNGIVALHSPPMRKDAAEKKGTLLRSAGCVGSRITSELFTKKFKHVVAKCYPALLLRSNRSLLMLLWRRFFAFSSLWTGALVDTGGEQAKRVVRNEQKDTTTSPLCWSAGANTVVSDQDQEQIRIWILTCRWFLTVGIMPGSWWAHHELGRGGWWFRDPVENASFMPWVLATARIHSVILPLLHSWISFLNIVTLPCCVSGTFSIRSGLLASVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTSKKEMVVARSTLVHLRHSARAQPRPVMLWKN
SIO_010081: ViraM_p22
subclass of: SO_0000673
so part of: ViraM_p22
location: 312130..313866
location: region:312130-313866:1
so has part: feature:312130-313866:1:exon

YP_004222823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:312130-313866:1:exon

ViraM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 5
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(323339..323497)
location: region:323339-323497:-1
so has part: feature:323339-323497:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:323339-323497:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
note: C to U RNA editing; CGA(Arg) to TGA as stop codon
so part of: sequence
location: 323341
location: region:323341-323341:1
so has part: feature:323341-323341:1:region

position:323341:1
position: 323341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323341-323341:1:region

ViraM_p11
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 2
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(323498..324417)
location: region:323498-324417:-1
so has part: feature:323498-324417:-1:exon

position:323498:-1
position: 323498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324417:-1
position: 324417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323498-324417:-1:exon

ViraM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 4
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(324418..324812)
location: region:324418-324812:-1
so has part: feature:324418-324812:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324418-324812:-1:exon

ViraM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad5
locus tag: ViraM_p11
number: 3
SIO_010081: ViraM_p11
subclass of: SO_0000673
so part of: ViraM_p11
location: complement(327461..327482)
location: region:327461-327482:-1
so has part: feature:327461-327482:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:327461-327482:-1:exon

ViraM_p23
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: atp1
locus tag: ViraM_p23
so part of: sequence
location: complement(331831..333357)
location: region:331831-333357:-1
so has part: feature:331831-333357:-1:exon
subclass of: SO_0000010

10215534
type: Gene
SIO_000068: ncbigene

position:331831:-1
position: 331831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333357:-1
position: 333357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331831-333357:-1:exon

ViraM_p23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: atp1
locus tag: ViraM_p23
codon start: 1
product: ATPase subunit 1
translation: MEFSVRAAELTTLLESRITNFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDKMPLDQIPQYERDILTTIKPELLQSLKGGLTSEIKIELEKFFKEKAKNYNL
SIO_010081: ViraM_p23
subclass of: SO_0000673
so part of: ViraM_p23
location: complement(331831..333357)
location: region:331831-333357:-1
so has part: feature:331831-333357:-1:exon

YP_004222824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:331831-333357:-1:exon

ViraM_p24
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rps12
locus tag: ViraM_p24
so part of: sequence
location: complement(335626..336003)
location: region:335626-336003:-1
so has part: feature:335626-336003:-1:exon
subclass of: SO_0000010

10215535
type: Gene
SIO_000068: ncbigene

position:335626:-1
position: 335626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:336003:-1
position: 336003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335626-336003:-1:exon

ViraM_p24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rps12
locus tag: ViraM_p24
codon start: 1
product: ribosomal protein S12
translation: MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSL
SIO_010081: ViraM_p24
subclass of: SO_0000673
so part of: ViraM_p24
location: complement(335626..336003)
location: region:335626-336003:-1
so has part: feature:335626-336003:-1:exon

YP_004222825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:335626-336003:-1:exon

ViraM_p25
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad3
locus tag: ViraM_p25
so part of: sequence
location: complement(336048..336404)
location: region:336048-336404:-1
so has part: feature:336048-336404:-1:exon
subclass of: SO_0000010

10215547
type: Gene
SIO_000068: ncbigene

position:336048:-1
position: 336048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:336404:-1
position: 336404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336048-336404:-1:exon

ViraM_p25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad3
locus tag: ViraM_p25
codon start: 1
product: NADH dehydrogenase subunit 3
translation: MSEFAPICIYLVISLLVSLILLGLPFPFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE
SIO_010081: ViraM_p25
subclass of: SO_0000673
so part of: ViraM_p25
location: complement(336048..336404)
location: region:336048-336404:-1
so has part: feature:336048-336404:-1:exon

YP_004222826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336048-336404:-1:exon

ViraM_p26
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: atp8
locus tag: ViraM_p26
so part of: sequence
location: complement(336627..337127)
location: region:336627-337127:-1
so has part: feature:336627-337127:-1:exon
subclass of: SO_0000010

10215536
type: Gene
SIO_000068: ncbigene

position:336627:-1
position: 336627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:337127:-1
position: 337127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336627-337127:-1:exon

ViraM_p26
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: atp8
locus tag: ViraM_p26
codon start: 1
product: ATPase subunit 8
translation: MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLVSNRGNKIRSNDPKSLEDIFRKGLSTGVSYMYSSLFEVSQWCNAVDLLGKRRKITFLSCFGEISGSRGMERNILYLISKSSYGASSSNPGWVITSRNDIMLIHVPHGQVIIKQIREERS
SIO_010081: ViraM_p26
subclass of: SO_0000673
so part of: ViraM_p26
location: complement(336627..337127)
location: region:336627-337127:-1
so has part: feature:336627-337127:-1:exon

YP_004222827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336627-337127:-1:exon

ViraM_p27
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: atp9-2
locus tag: ViraM_p27
so part of: sequence
location: 343157..343381
location: region:343157-343381:1
so has part: feature:343157-343381:1:exon
subclass of: SO_0000010

10215550
type: Gene
SIO_000068: ncbigene

position:343157:1
position: 343157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343381:1
position: 343381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343157-343381:1:exon

ViraM_p27
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: atp9-2
locus tag: ViraM_p27
codon start: 1
product: ATPase subunit 9
translation: MLEGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMAFLILFVF
SIO_010081: ViraM_p27
subclass of: SO_0000673
so part of: ViraM_p27
location: 343157..343381
location: region:343157-343381:1
so has part: feature:343157-343381:1:exon

YP_004222828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:343157-343381:1:exon

ViraM_p28
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
so part of: sequence
location: 343635..350125
location: region:343635-350125:1
so has part: feature:343635-350125:1:exon
subclass of: SO_0000010

10215537
type: Gene
SIO_000068: ncbigene

position:343635:1
position: 343635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:350125:1
position: 350125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343635-350125:1:exon

ViraM_p28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
codon start: 1
product: NADH dehydrogenase subunit 7
translation: MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRLDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHLLALTTHAMDVGASTPSLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSMRIIWQCPNKIPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: join(343635..343777,344672..344740,346079..346545,347607..347850,349864..350125)
location: region:343635-350125:1
so has part: feature:343635-343777:1:exon
so has part: feature:344672-344740:1:exon
so has part: feature:346079-346545:1:exon
so has part: feature:347607-347850:1:exon
so has part: feature:349864-350125:1:exon

YP_004222829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:343635-343777:1:exon

position:343777:1
position: 343777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:344672-344740:1:exon

position:344672:1
position: 344672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344740:1
position: 344740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:346079-346545:1:exon

position:346079:1
position: 346079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346545:1
position: 346545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:347607-347850:1:exon

position:347607:1
position: 347607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347850:1
position: 347850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:349864-350125:1:exon

position:349864:1
position: 349864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p28
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 1
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 343635..343777
location: region:343635-343777:1
so has part: feature:343635-343777:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:343635-343777:1:exon

ViraM_p28
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 1
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 343778..344671
location: region:343778-344671:1
so has part: feature:343778-344671:1:exon

position:343778:1
position: 343778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344671:1
position: 344671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343778-344671:1:exon

ViraM_p28
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 2
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 344672..344740
location: region:344672-344740:1
so has part: feature:344672-344740:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:344672-344740:1:exon

ViraM_p28
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 2
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 344741..346078
location: region:344741-346078:1
so has part: feature:344741-346078:1:exon

position:344741:1
position: 344741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346078:1
position: 346078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344741-346078:1:exon

ViraM_p28
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 3
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 346079..346545
location: region:346079-346545:1
so has part: feature:346079-346545:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:346079-346545:1:exon

ViraM_p28
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 3
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 346546..347606
location: region:346546-347606:1
so has part: feature:346546-347606:1:exon

position:346546:1
position: 346546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347606:1
position: 347606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:346546-347606:1:exon

ViraM_p28
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 4
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 347607..347850
location: region:347607-347850:1
so has part: feature:347607-347850:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:347607-347850:1:exon

ViraM_p28
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 4
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 347851..349863
location: region:347851-349863:1
so has part: feature:347851-349863:1:exon

position:347851:1
position: 347851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349863:1
position: 349863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:347851-349863:1:exon

ViraM_p28
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: nad7
locus tag: ViraM_p28
number: 5
SIO_010081: ViraM_p28
subclass of: SO_0000673
so part of: ViraM_p28
location: 349864..350125
location: region:349864-350125:1
so has part: feature:349864-350125:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:349864-350125:1:exon

ViraM_t16
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: trnC-GCA-2
locus tag: ViraM_t16
note: anticodon:GCA
so part of: sequence
location: 360790..360860
location: region:360790-360860:1
so has part: feature:360790-360860:1:exon
subclass of: SO_0000663

10215538
type: Gene
SIO_000068: ncbigene

position:360790:1
position: 360790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:360860:1
position: 360860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360790-360860:1:exon

ViraM_t16
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 157791
gene: trnC-GCA-2
locus tag: ViraM_t16
product: tRNA-Cys
SIO_010081: ViraM_t16
subclass of: SO_0000673
so part of: ViraM_t16
location: 360790..360860
location: region:360790-360860:1
so has part: feature:360790-360860:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360790-360860:1:exon

ViraM_p29
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: sdh4
locus tag: ViraM_p29
pseudo: true
so part of: sequence
location: complement(367836..368259)
location: region:367836-368259:-1
so has part: feature:367836-368259:-1:exon

10215539
type: Gene
SIO_000068: ncbigene

position:367836:-1
position: 367836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368259:-1
position: 368259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367836-368259:-1:exon

ViraM_p30
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: cox3
locus tag: ViraM_p30
so part of: sequence
location: complement(368187..368984)
location: region:368187-368984:-1
so has part: feature:368187-368984:-1:exon
subclass of: SO_0000010

10215552
type: Gene
SIO_000068: ncbigene

position:368187:-1
position: 368187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368984:-1
position: 368984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:368187-368984:-1:exon

ViraM_p30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: cox3
locus tag: ViraM_p30
codon start: 1
product: cytochrome c oxidase subunit 3
translation: MIESQRHSYHLVDPSPWPISGSLGALATTVGGVMYMHSFQGGATLLSLGLIFILYTMFVWWRDVLRESTLEGHHTKVVQLGPRYGSIPFIVSEVMFLFAFFRASSHSSLAPTVEIGGIWPPLGIWVLDPWEIPFLNTPILLSSGAAVTWAHHAILAGKEKRAVYALVATVSLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYWWGGI
SIO_010081: ViraM_p30
subclass of: SO_0000673
so part of: ViraM_p30
location: complement(368187..368984)
location: region:368187-368984:-1
so has part: feature:368187-368984:-1:exon

YP_004222830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:368187-368984:-1:exon

ViraM_p31
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: nad4L
locus tag: ViraM_p31
so part of: sequence
location: 395639..395941
location: region:395639-395941:1
so has part: feature:395639-395941:1:exon
subclass of: SO_0000010

10215540
type: Gene
SIO_000068: ncbigene

position:395639:1
position: 395639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:395941:1
position: 395941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395639-395941:1:exon

ViraM_p31
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: nad4L
locus tag: ViraM_p31
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 4L
translation: MDPIKYFTFSMIISILGIRGILLNRRNIPIMSMPIESMLLAVNSNFLVFSVSSDDMMGQSFASLVSTVAAAESAIGLAIFVITFRVRGTIAVEFINSIQG
SIO_010081: ViraM_p31
subclass of: SO_0000673
so part of: ViraM_p31
location: 395639..395941
location: region:395639-395941:1
so has part: feature:395639-395941:1:exon

YP_004222831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:395639-395941:1:exon

ViraM_p31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
gene: nad4L
locus tag: ViraM_p31
note: C to U RNA editing; ACG(Thr) to ATG as start codon
SIO_010081: ViraM_p31
subclass of: SO_0000673
so part of: ViraM_p31
location: 395640
location: region:395640-395640:1
so has part: feature:395640-395640:1:exon

position:395640:1
position: 395640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395640-395640:1:exon

ViraM_p32
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: atp4
locus tag: ViraM_p32
so part of: sequence
location: 396137..396730
location: region:396137-396730:1
so has part: feature:396137-396730:1:exon
subclass of: SO_0000010

10215551
type: Gene
SIO_000068: ncbigene

position:396137:1
position: 396137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396730:1
position: 396730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396137-396730:1:exon

ViraM_p32
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: atp4
locus tag: ViraM_p32
codon start: 1
product: ATPase subunit 4
translation: MRLSSTNMPRKMLFAAIPSICALSSKKISIYNEEMIVARCFIGFIIFSRKSLGNTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLGTKFHLLVRRRFGPQCISKAEKIELIRESLVVLRMVRVGGSLKNKEDE
SIO_010081: ViraM_p32
subclass of: SO_0000673
so part of: ViraM_p32
location: 396137..396730
location: region:396137-396730:1
so has part: feature:396137-396730:1:exon

YP_004222832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:396137-396730:1:exon

ViraM_p33
type: Gene
subclass of: SO_0000704
RO_0002162: 157791
gene: rps10
locus tag: ViraM_p33
so part of: sequence
location: 397904..401056
location: region:397904-401056:1
so has part: feature:397904-401056:1:exon
subclass of: SO_0000010

10215541
type: Gene
SIO_000068: ncbigene

position:397904:1
position: 397904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401056:1
position: 401056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397904-401056:1:exon

ViraM_p33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157791
gene: rps10
locus tag: ViraM_p33
exception: RNA editing
codon start: 1
product: ribosomal protein S10
translation: MTTKIRIVIRSFDHPFLENHFGGLQPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKKFLIIKTEKHELRKKFFRLKRQRIFGAQYEILFSCKTRSDKGKLQRLLRSKILALTLS
SIO_010081: ViraM_p33
subclass of: SO_0000673
so part of: ViraM_p33
location: join(397904..398153,400944..401056)
location: region:397904-401056:1
so has part: feature:397904-398153:1:exon
so has part: feature:400944-401056:1:exon

YP_004222833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:397904-398153:1:exon

position:398153:1
position: 398153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:400944-401056:1:exon

position:400944:1
position: 400944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViraM_p33
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: rps10
locus tag: ViraM_p33
number: 1
SIO_010081: ViraM_p33
subclass of: SO_0000673
so part of: ViraM_p33
location: 397904..398153
location: region:397904-398153:1
so has part: feature:397904-398153:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:397904-398153:1:exon

ViraM_p33
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 157791
gene: rps10
locus tag: ViraM_p33
note: C to U RNA editing; ACG(Thr) to ATG as start codon
SIO_010081: ViraM_p33
subclass of: SO_0000673
so part of: ViraM_p33
location: 397905
location: region:397905-397905:1
so has part: feature:397905-397905:1:exon

position:397905:1
position: 397905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397905-397905:1:exon

ViraM_p33
type: Intron
subclass of: SO_0000188
RO_0002162: 157791
gene: rps10
locus tag: ViraM_p33
SIO_010081: ViraM_p33
subclass of: SO_0000673
so part of: ViraM_p33
location: 398154..400943
location: region:398154-400943:1
so has part: feature:398154-400943:1:exon

position:398154:1
position: 398154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400943:1
position: 400943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398154-400943:1:exon

ViraM_p33
type: Exon
subclass of: SO_0000147
RO_0002162: 157791
gene: rps10
locus tag: ViraM_p33
number: 2
SIO_010081: ViraM_p33
subclass of: SO_0000673
so part of: ViraM_p33
location: 400944..401056
location: region:400944-401056:1
so has part: feature:400944-401056:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:400944-401056:1:exon