Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseobacter.
Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis
Submitted (23-MAR-2011) Goettingen Genomics Laboratory, Georg-August University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony D-37077, Germany
Submitted (19-NOV-2007) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002624.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 02:19:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,549\nCDSs (total) :: 4,505\nGenes (coding) :: 4,405\nCDSs (with protein) :: 4,405\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 100\nCDSs (without protein) :: 100\nPseudo Genes (ambiguous residues) :: 0 of 100\nPseudo Genes (frameshifted) :: 49 of 100\nPseudo Genes (incomplete) :: 63 of 100\nPseudo Genes (internal stop) :: 31 of 100\nPseudo Genes (multiple problems) :: 36 of 100\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013385643.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007803651.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566480.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984560.1
GO:0010007 - magnesium chelatase complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0016851 - magnesium chelatase activity [Evidence IEA]
GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566478.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984562.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984563.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004659 - prenyltransferase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566475.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984565.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566473.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566472.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566471.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984569.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984570.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]
chlorophyll synthesis pathway protein BchC
COORDINATES: similar to AA sequence:RefSeq:WP_008280392.1
chlorophyllide a reductase iron protein subunit X
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008280390.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984573.1
COORDINATES: protein motif:HMM:NF017235.2
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015979 - photosynthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566464.1
GO:0030096 - plasma membrane-derived thylakoid photosystem II [Evidence IEA]
GO:0015979 - photosynthesis [Evidence IEA]
light-harvesting antenna LH1, beta subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011566463.1
light-harvesting antenna LH1, alpha subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011566461.1
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
photosynthetic reaction center subunit L
COORDINATES: similar to AA sequence:RefSeq:WP_013984577.1
photosynthetic reaction center subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_011566459.1
photosynthetic reaction center cytochrome PufC
COORDINATES: similar to AA sequence:RefSeq:WP_011566458.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008555165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566456.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881293.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566454.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566451.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884582.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011566449.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566448.1
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566447.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011566446.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566445.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566444.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566443.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984594.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984595.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566438.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984598.1
ABC-type transport auxiliary lipoprotein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566435.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566434.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566433.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566432.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]; GO:0019516 - lactate oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984603.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
heterodisulfide reductase-related iron-sulfur binding cluster
COORDINATES: similar to AA sequence:RefSeq:WP_011566430.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012482301.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009819787.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009158081.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0015948 - methanogenesis [Evidence IEA]
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009829019.1
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011650961.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_011569829.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191737.1
COORDINATES: similar to AA sequence:RefSeq:WP_011569830.1
COORDINATES: similar to AA sequence:RefSeq:WP_011569831.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013984618.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566502.1
GO:0045550 - geranylgeranyl reductase activity [Evidence IEA]
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]; GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984621.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566499.1
GO:0010109 - regulation of photosynthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566498.1
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011566497.1
2-vinyl bacteriochlorophyllide hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_013984625.1
GO:0016730 - oxidoreductase activity, acting on iron-sulfur proteins as donors [Evidence IEA]
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N
COORDINATES: similar to AA sequence:RefSeq:WP_019954334.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_013984627.1
COORDINATES: similar to AA sequence:RefSeq:WP_012180193.1
ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011566492.1
GO:0046406 - magnesium protoporphyrin IX methyltransferase activity [Evidence IEA]
magnesium protoporphyrin IX methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013984630.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984631.1
photosynthetic reaction center subunit H
COORDINATES: similar to AA sequence:RefSeq:WP_011566489.1
photosynthetic complex putative assembly protein PuhB
COORDINATES: similar to AA sequence:RefSeq:WP_011566488.1
GO:0003674 - molecular_function [Evidence IEA]
photosynthetic complex assembly protein PuhC
COORDINATES: similar to AA sequence:RefSeq:WP_002720458.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814227.1
GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity [Evidence IEA]
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_013984636.1
putative photosynthetic complex assembly protein PuhE
COORDINATES: similar to AA sequence:RefSeq:WP_009819261.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013984638.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566482.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121135.1