Pontibacter akesuensis strain AKS 1T plasmid Paks1, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Pontibacter.
Submitted (11-MAR-2016) Hubei Provincial Center for Disease Control and Prevention, Hubei Provincial Center for Disease Control and Prevention, No. 6, Road Zhuodaoquang, Wuhan 430000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014767.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Soapdenovo v. 1.05\nGenome Coverage :: 400x\nSequencing Technology :: Illumina HiSeq2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 14:53:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,128\nCDSs (total) :: 4,070\nGenes (coding) :: 4,059\nCDSs (with protein) :: 4,059\nGenes (RNA) :: 58\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 2 of 11\nPseudo Genes (incomplete) :: 9 of 11\nPseudo Genes (internal stop) :: 0 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018477742.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018477743.1
COORDINATES: protein motif:HMM:NF022577.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006842673.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007655911.1
GO:0008714 - AMP nucleosidase activity [Evidence IEA]
GO:0044209 - AMP salvage [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018478695.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF016430.2
COORDINATES: protein motif:HMM:NF024857.2
COORDINATES: similar to AA sequence:RefSeq:WP_019941456.1
COORDINATES: protein motif:HMM:NF040319.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018622466.1
COORDINATES: similar to AA sequence:RefSeq:WP_007652294.1
COORDINATES: protein motif:HMM:NF019320.2
heme NO-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_018479341.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011970619.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015431488.1
COORDINATES: similar to AA sequence:RefSeq:WP_012190033.1
COORDINATES: similar to AA sequence:RefSeq:WP_018479343.1
COORDINATES: similar to AA sequence:RefSeq:WP_018479344.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
NtaA/DmoA family FMN-dependent monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_018479345.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008508672.1
COORDINATES: similar to AA sequence:RefSeq:WP_013445168.1
COORDINATES: similar to AA sequence:RefSeq:WP_014772700.1
COORDINATES: similar to AA sequence:RefSeq:WP_007211445.1
COORDINATES: similar to AA sequence:RefSeq:WP_009129391.1
COORDINATES: similar to AA sequence:RefSeq:WP_013444153.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009781378.1
COORDINATES: similar to AA sequence:RefSeq:WP_018575409.1
COORDINATES: protein motif:HMM:NF025278.2
COORDINATES: similar to AA sequence:RefSeq:WP_015198906.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480076.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_009583074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011709074.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480069.1
COORDINATES: similar to AA sequence:RefSeq:WP_019948849.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013925824.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194911.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018480064.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931297.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659578.1
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF024553.2
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010599609.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480028.1
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: similar to AA sequence:RefSeq:WP_018480026.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661352.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480021.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_018480020.1
COORDINATES: similar to AA sequence:RefSeq:WP_010599854.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018477718.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018477719.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018477722.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015773374.1
COORDINATES: similar to AA sequence:RefSeq:WP_011709172.1
bifunctional UDP-sugar hydrolase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_020604720.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477725.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477726.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477727.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477729.1
COORDINATES: similar to AA sequence:RefSeq:WP_002987863.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008243020.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477732.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477733.1
COORDINATES: similar to AA sequence:RefSeq:WP_013931314.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018477735.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477737.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018477738.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477739.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477740.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477741.1