Mycolicibacterium crocinum strain JCM 16369 plasmid unnamed2, complete sequence.
type: Entry
definition: Mycolicibacterium crocinum strain JCM 16369 plasmid unnamed2, complete sequence.
sequence version: NZ_CP103314.1
sequence date: 2023-06-25
sequence: sequence
division: CON
label: NZ_CP103314.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN20254251
keyword: RefSeq
source: Mycolicibacterium crocinum (Mycobacterium crocinum)
organism: Mycolicibacterium crocinum
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
reference: 1
references: 36651784
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP103314.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 90x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/25/2023 10:35:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,068\nCDSs (total) :: 6,013\nGenes (coding) :: 5,901\nCDSs (with protein) :: 5,901\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 112\nCDSs (without protein) :: 112\nPseudo Genes (ambiguous residues) :: 0 of 112\nPseudo Genes (frameshifted) :: 43 of 112\nPseudo Genes (incomplete) :: 74 of 112\nPseudo Genes (internal stop) :: 5 of 112\nPseudo Genes (multiple problems) :: 10 of 112\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18460
topology: circular
so has quality: SO_0000988
location: 1..18460
location: region:1-18460:1
RO_0002162: 388459

NZ_CP103314
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN20254251
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequences of 14 Nontuberculous Mycobacteria Type Strains
author: Igarashi, Y.
author: Osugi, A.
author: Murase, Y.
author: Chikamatsu, K.
author: Shimomura, Y.
author: Hosoya, M.
author: Aono, A.
author: Morishige, Y.
author: Yamada, H.
author: Takaki, A.
author: Mitarai, S.
journal: Microbiol Resour Announc 12 (2), e0121422 (2023)
pubmed: 36651784

36651784
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Igarashi, Y.
author: Osugi, A.
author: Mitarai, S.
journal: Submitted (22-AUG-2022) Department of Mycobacterium Reference and Research, Research Institute of Tuberculosis, 3-1-24 Matsuyama, Kiyose, Tokyo 204-8533, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18460:1
position: 18460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18460:1:source
so part of: sequence
organism: Mycolicibacterium crocinum
mol type: genomic DNA
strain: JCM 16369
type material: type strain of Mycobacterium crocinum
plasmid: unnamed2

388459
type: Taxonomy
SIO_000068: taxonomy

MI149_RS30240
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30240
old locus tag: MI149_30310
so part of: sequence
location: 1..630
location: region:1-630:1
so has part: feature:1-630:1:exon
subclass of: SO_0000010

position:630:1
position: 630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-630:1:exon

MI149_RS30240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30240
old locus tag: MI149_30310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005149425.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPALTIVVANLKGGSTKTTTAAFVLHALAEAGLPALGVDADGENESLLAWSETGEWSIPVIGMPVADLHRKLPGVIGDRYDAVVIDTPPMKERRGVVASAIRIATHVLVPMAPTGMEYARIPAIRELVEEAGALAVTPPQLAVVLTRTVSNAASTDVYRQMLTDDGVRVLQPTVGRLERYAQAFGLPITNAASTAYGDIAEELTSIEVQ
SIO_010081: MI149_RS30240
subclass of: SO_0000673
so part of: MI149_RS30240
location: 1..630
location: region:1-630:1
so has part: feature:1-630:1:exon

WP_262871832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-630:1:exon

MI149_RS30245
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30245
old locus tag: MI149_30315
so part of: sequence
location: 682..1011
location: region:682-1011:1
so has part: feature:682-1011:1:exon
subclass of: SO_0000010

position:682:1
position: 682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1011:1
position: 1011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:682-1011:1:exon

MI149_RS30245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30245
old locus tag: MI149_30315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005149424.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGTAADRIKANAERLRKAPAQPTVTPESSEPVPETAPAPVVRQKTVRRTVDLSPTAHRGLDNWQRDTADRLGLARVTGQEVLTALVDRLLADSKLAEQIVRSIAGQRP
SIO_010081: MI149_RS30245
subclass of: SO_0000673
so part of: MI149_RS30245
location: 682..1011
location: region:682-1011:1
so has part: feature:682-1011:1:exon

WP_262871833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:682-1011:1:exon

MI149_RS30250
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30250
old locus tag: MI149_30320
so part of: sequence
location: 1250..1774
location: region:1250-1774:1
so has part: feature:1250-1774:1:exon
subclass of: SO_0000010

position:1250:1
position: 1250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1774:1
position: 1774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1250-1774:1:exon

MI149_RS30250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30250
old locus tag: MI149_30320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005149413.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYIYVDETKQRDYLLVASVHVSTDLTALRQLVRGLLLPGQRYLHMKNEKDGRKRTIAQALVGAGVQATVYRAGAQHRNERQRRSACLRALIEDHAHARDAHIVFDEDETMVKFDNQKLIEYTRAAGCRDTLRYEHKQPHADALLAIPDAIAWCWAKGGHWRTLIGPAVTATREV
SIO_010081: MI149_RS30250
subclass of: SO_0000673
so part of: MI149_RS30250
location: 1250..1774
location: region:1250-1774:1
so has part: feature:1250-1774:1:exon

WP_262871834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1250-1774:1:exon

MI149_RS30255
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30255
old locus tag: MI149_30325
so part of: sequence
location: 2060..2266
location: region:2060-2266:1
so has part: feature:2060-2266:1:exon
subclass of: SO_0000010

position:2060:1
position: 2060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2266:1
position: 2266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2060-2266:1:exon

MI149_RS30255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30255
old locus tag: MI149_30325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005149417.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQRRSTHKGDRAQIMTRPDRVVYEIVKREAAQRGIPMGQYVADVLAAHVGHPELIRELDKEVLPLAM
SIO_010081: MI149_RS30255
subclass of: SO_0000673
so part of: MI149_RS30255
location: 2060..2266
location: region:2060-2266:1
so has part: feature:2060-2266:1:exon

WP_036349704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2060-2266:1:exon

MI149_RS30260
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30260
old locus tag: MI149_30330
so part of: sequence
location: 2533..3768
location: region:2533-3768:1
so has part: feature:2533-3768:1:exon
subclass of: SO_0000010

position:2533:1
position: 2533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3768:1
position: 3768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2533-3768:1:exon

MI149_RS30260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30260
old locus tag: MI149_30330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005149418.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rep protein
translation: MSSACPTPLGAAIAPTPHALRALANERRRSWVERAGACAPRAPMWTSRAGWLDGLQRWAQSSALGQLCAAERVSITAATLLAIAAVMAEHADHATGRHVAVTRATIASRVGCDVRTVTAAWRVLRASQWAVEAQRGHGSPGTPSIGRRPSVYHLVPRRDVRPVPCPVVHDFHLPPSGGVGCFSPVGSYSPSGRASAPAQQMAQNGSKTRTARPPRRTSPRPLTVQRLAAELVSRTLGLDRAHIGTICDALTAASIDPSVWTARAITDALEADMRARGVTWPDHITNPGAFLHSRLRRLSWTPPQPATKAGGSAAASIDPTPTPVVLTAAAQARIAAAQHEIRRVLRDRAQHTATEHTHTHGSVRHRPRLRTLSTERTHPSHNDALEATTTPQCQHFSPVRQRLTEKPNRDS
SIO_010081: MI149_RS30260
subclass of: SO_0000673
so part of: MI149_RS30260
location: 2533..3768
location: region:2533-3768:1
so has part: feature:2533-3768:1:exon

WP_262871835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2533-3768:1:exon

MI149_RS30265
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
gene: mobF
locus tag: MI149_RS30265
old locus tag: MI149_30335
so part of: sequence
location: 4040..6973
location: region:4040-6973:1
so has part: feature:4040-6973:1:exon
subclass of: SO_0000010

position:4040:1
position: 4040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6973:1
position: 6973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4040-6973:1:exon

MI149_RS30265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
gene: mobF
locus tag: MI149_RS30265
old locus tag: MI149_30335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017555467.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MLTVAKLSRWSVNYYNDTARAVGDAIADRQKANGGLAEYYAERDTRTPVWTCAGDARVAADLVGLSDGERSGGDADPEVVARWLDDGVVPSGECGRAHGKHAVHGFDLTFCAPKSVSLVRVFGDDVIDKAVSVAHQTAIGEALEYLSAHAGYTRVHNPITGEKDLQKLPGLVAAAYQHETSRAGDPHLHTHVLVPNRQARADGRLVSIDGTSLFHEARAAGIIYQATLRHELHRLAGIEWGPVDPATGMAEIAGIDPKNLAAWSQRSTQLRQWAANNLTVVDAVAGLSQAQLAAAQKATRPRKPESLSWAELRAQWRADERGLRVSRAAQQQAREARQQAARAAAARLSRGRPVVDRRAVGAMAARADKAGLTRADLVEVIGAQLPLMSADVAGPDSGGGAGGEVAGLPRQLIEACVDVVGVRLTGPRLAHQREGSARYTVDLILAEERRVFDLVDTTNVRAMAWVRPDEHTAAALGLSAQQHQVVTAIATTPQLVVPLSAPAGAGKTTSMRALRSIVERRSKARMIVIAPTGKAVDVAVAEGAATEGYTMHSALARFADGRLQLGPFDVVVVDEAGMVGTDHWRQLLTATTGAGTKTVMVGDAHQLEPVQARGGMFAQLCDELPWAQRLTEVWRQQDPAERTAALAVGDGGPAAVRRAINWYRDHHRLACGDQVTMAADALAAHQTDLAAGKDALLLADTLEMCDALNHRVHDHTIAQHAATGRDTTTVTGNRGHHIGVGDVIVTRRNDPTITVYNPDDRTQTMVEAPVRNGQRWHVVKVDDATEHPRITARRLSDGAWAVFSDDYLRQQVQLGHAVTVHAAQGVTADTTHTVLADTASRNLAYVALTRGRTANHAYLYQRDSTEADHTHSHDLADVGGVHLARRGSPLEAARALRQVVGRDERARTAHQIADDTPSQHLPDLVASLITEHHRSVIRRRSTYQKTQRAQQDRVLDRHLGMERSQHREQESGYDLSL
SIO_010081: MI149_RS30265
subclass of: SO_0000673
so part of: MI149_RS30265
location: 4040..6973
location: region:4040-6973:1
so has part: feature:4040-6973:1:exon

WP_262871836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4040-6973:1:exon

MI149_RS30270
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30270
old locus tag: MI149_30340
so part of: sequence
location: 6957..7394
location: region:6957-7394:1
so has part: feature:6957-7394:1:exon
subclass of: SO_0000010

position:6957:1
position: 6957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7394:1
position: 7394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6957-7394:1:exon

MI149_RS30270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30270
old locus tag: MI149_30340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSASNPPTVPVVGARIDAVADRIATGWGHHTHTRLTAVIAQLYTDLAVLSPHWSPRQRAEWITDAADATTTTELTTLLDDYLDRDADHPPVTVYGSTLHTDDRHDAVTAMLAALTIDHLTGWITSGLADFHGRVYLSKGKLNDG
SIO_010081: MI149_RS30270
subclass of: SO_0000673
so part of: MI149_RS30270
location: 6957..7394
location: region:6957-7394:1
so has part: feature:6957-7394:1:exon

WP_262871837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6957-7394:1:exon

MI149_RS30275
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30275
old locus tag: MI149_30345
so part of: sequence
location: 7387..7626
location: region:7387-7626:1
so has part: feature:7387-7626:1:exon
subclass of: SO_0000010

position:7387:1
position: 7387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7626:1
position: 7626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7387-7626:1:exon

MI149_RS30275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30275
old locus tag: MI149_30345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVDQIPFEKHTREWWERLTDDQRARVKKAAEDDDTSSVTARLLADTRCPVGLVGTAWESDPEYSWSWPKGMRDFVADQP
SIO_010081: MI149_RS30275
subclass of: SO_0000673
so part of: MI149_RS30275
location: 7387..7626
location: region:7387-7626:1
so has part: feature:7387-7626:1:exon

WP_262871838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7387-7626:1:exon

MI149_RS30280
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30280
old locus tag: MI149_30350
so part of: sequence
location: 8056..8877
location: region:8056-8877:1
so has part: feature:8056-8877:1:exon
subclass of: SO_0000010

position:8056:1
position: 8056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8877:1
position: 8877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8056-8877:1:exon

MI149_RS30280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30280
old locus tag: MI149_30350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012296228.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-70 family RNA polymerase sigma factor
translation: MDRPARRPGPPVDAARIQPDEDDQAGGQHLDNSLVSTWLEDPDLAAELADELERLRRLQADEELLLALELHQFTGRLWDRFVRELSRYGLGVLRAWIRHGTIYGKAKALTGYGLGRIEGWPDDQTIDDIATDTVVAALIYFRDKVLMTHRWQSSGGASLGTFFIGQCLYQFANIYRSALRAERERIDQATEPMAELPEDRFDIIKGIEETIVANDTVAEAMAMLSTDRARRALFLQENGFSQREIADELGLPDAKSVENLIGYQLRQLRKRTS
SIO_010081: MI149_RS30280
subclass of: SO_0000673
so part of: MI149_RS30280
location: 8056..8877
location: region:8056-8877:1
so has part: feature:8056-8877:1:exon

WP_262871839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8056-8877:1:exon

MI149_RS30285
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30285
old locus tag: MI149_30355
so part of: sequence
location: 8874..9314
location: region:8874-9314:1
so has part: feature:8874-9314:1:exon
subclass of: SO_0000010

position:8874:1
position: 8874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9314:1
position: 9314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8874-9314:1:exon

MI149_RS30285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30285
old locus tag: MI149_30355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012296229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTIKHLTALIDASSLGTSTARAARTSVTAAEGDALARRAAEGGHGRDDSEQFRGRVGKRTYRSVSGSTPGRTTRKDKTMAKGHHRSAATGRYVKASTAARNPKTTVTERGANRSSGTHHRSAITGKFVKASTAARHPNTTVTERG
SIO_010081: MI149_RS30285
subclass of: SO_0000673
so part of: MI149_RS30285
location: 8874..9314
location: region:8874-9314:1
so has part: feature:8874-9314:1:exon

WP_262871840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8874-9314:1:exon

MI149_RS30290
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30290
old locus tag: MI149_30360
so part of: sequence
location: 9401..9658
location: region:9401-9658:1
so has part: feature:9401-9658:1:exon
subclass of: SO_0000010

position:9401:1
position: 9401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9658:1
position: 9658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9401-9658:1:exon

MI149_RS30290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30290
old locus tag: MI149_30360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014805580.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIHTTVEALGGAQAVPSELIPARQLHQHLIHQVATGAGNVVLADTAGRPAAVVMSLPRYEQLLDELITLRRNNSPTTPDGSSRAD
SIO_010081: MI149_RS30290
subclass of: SO_0000673
so part of: MI149_RS30290
location: 9401..9658
location: region:9401-9658:1
so has part: feature:9401-9658:1:exon

WP_262871820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9401-9658:1:exon

MI149_RS30295
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30295
old locus tag: MI149_30365
so part of: sequence
location: 9648..9923
location: region:9648-9923:1
so has part: feature:9648-9923:1:exon
subclass of: SO_0000010

position:9648:1
position: 9648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9923:1
position: 9923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9923:1:exon

MI149_RS30295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30295
old locus tag: MI149_30365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011780453.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLTDADVQALGRRAQEVGRRIGWDLQFVVAPNSEYVGLAAGGGADQTDPIVVLGPSRITDLAVHEIDLALDALQRGDRHIVLDEDGDPRLI
SIO_010081: MI149_RS30295
subclass of: SO_0000673
so part of: MI149_RS30295
location: 9648..9923
location: region:9648-9923:1
so has part: feature:9648-9923:1:exon

WP_262871821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9923:1:exon

MI149_RS30300
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30300
old locus tag: MI149_30370
so part of: sequence
location: complement(10090..11316)
location: region:10090-11316:-1
so has part: feature:10090-11316:-1:exon
subclass of: SO_0000010

position:10090:-1
position: 10090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11316:-1
position: 11316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10090-11316:-1:exon

MI149_RS30300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30300
old locus tag: MI149_30370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSTVDFQSMPQDLSAAFQQGANGEFTALFFDLRNSLEGKVTRSAAAWLSDLGFLYTTVRTCKEELVPHAVIKFAGDGVILVDDSSYAADAINCAIKVVEAFAEASAPRRGQFIGDVSVEVSVGIATGELLQFQPPEGGLDHVGPVMDIAARLCSMASPNAILVDTITVEVANMGKVSSRHGVLTRRTPAEYRGDRELVKMKGIPELFAYHEVLWEAHRFGIRSEAVTEAAASRATPQHPPVSAPPTVAPERSRGADDKKVGTVKTWLSDKGFGFVTDASGEDFHFSPKSLVYPEDAQLLGQPNTQLAFRTAPALQEGKSRRAVTVLVIGADAEGRITHINQDRHFAFIDVSDDFGNAISVYMSVLPGQTWAVGDEVTFEVASSPKGPRALKVERAEDDQPDQPESAA
SIO_010081: MI149_RS30300
subclass of: SO_0000673
so part of: MI149_RS30300
location: complement(10090..11316)
location: region:10090-11316:-1
so has part: feature:10090-11316:-1:exon

WP_262871822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10090-11316:-1:exon

MI149_RS30305
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30305
old locus tag: MI149_30375
so part of: sequence
location: complement(11486..11809)
location: region:11486-11809:-1
so has part: feature:11486-11809:-1:exon
subclass of: SO_0000010

position:11486:-1
position: 11486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11809:-1
position: 11809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11486-11809:-1:exon

MI149_RS30305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30305
old locus tag: MI149_30375
inference: COORDINATES: protein motif:HMM:NF039402.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MATKNRTDSLRDETGDPGTPKNSTFSLRLRPNEFEILNSLANLHNKSIAELAREFIRAGIRDALDPAEIDRRIEEEKQRLMAAADEMRKAVLDDQSRSSEKTAEHKV
SIO_010081: MI149_RS30305
subclass of: SO_0000673
so part of: MI149_RS30305
location: complement(11486..11809)
location: region:11486-11809:-1
so has part: feature:11486-11809:-1:exon

WP_262871823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11486-11809:-1:exon

MI149_RS30310
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30310
old locus tag: MI149_30380
so part of: sequence
location: 12009..12359
location: region:12009-12359:1
so has part: feature:12009-12359:1:exon
subclass of: SO_0000010

position:12009:1
position: 12009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12359:1
position: 12359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12009-12359:1:exon

MI149_RS30310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30310
old locus tag: MI149_30380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDPEPVEVPDEAELTHVALAEPVEVVEVIGDQGDQDVIINVTADLAEDDGDDLEYTMGYLLLFGRSTQEFQHELGILARKRDASLDAQVRRAEALVEGAVEALRAELPEPDQFGP
SIO_010081: MI149_RS30310
subclass of: SO_0000673
so part of: MI149_RS30310
location: 12009..12359
location: region:12009-12359:1
so has part: feature:12009-12359:1:exon

WP_262871824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12009-12359:1:exon

MI149_RS30315
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30315
old locus tag: MI149_30385
so part of: sequence
location: 12414..12776
location: region:12414-12776:1
so has part: feature:12414-12776:1:exon
subclass of: SO_0000010

position:12414:1
position: 12414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12776:1
position: 12776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12414-12776:1:exon

MI149_RS30315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30315
old locus tag: MI149_30385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEITRLTYVGPPAHVSALAEELENQGLTVRYRPPGETRDLATALAAVSVLLAATGPVSSIVSGVQRFLKRFPSTRVEGVPEDQSPPGIRERLAHIDELKAAGTITADEHAEQRARILREL
SIO_010081: MI149_RS30315
subclass of: SO_0000673
so part of: MI149_RS30315
location: 12414..12776
location: region:12414-12776:1
so has part: feature:12414-12776:1:exon

WP_262871825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12414-12776:1:exon

MI149_RS30320
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30320
old locus tag: MI149_30390
so part of: sequence
location: 13200..13400
location: region:13200-13400:1
so has part: feature:13200-13400:1:exon
subclass of: SO_0000010

position:13200:1
position: 13200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13400:1
position: 13400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13200-13400:1:exon

MI149_RS30320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30320
old locus tag: MI149_30390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRWTSIDTHCSGCLRPAPADEADPENTQWMVKSIIKDRDFLDGPYLVVCPACHQQALPDLRHVGS
SIO_010081: MI149_RS30320
subclass of: SO_0000673
so part of: MI149_RS30320
location: 13200..13400
location: region:13200-13400:1
so has part: feature:13200-13400:1:exon

WP_262871826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13200-13400:1:exon

MI149_RS30325
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30325
old locus tag: MI149_30395
so part of: sequence
location: 13440..13856
location: region:13440-13856:1
so has part: feature:13440-13856:1:exon
subclass of: SO_0000010

position:13440:1
position: 13440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13856:1
position: 13856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13440-13856:1:exon

MI149_RS30325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30325
old locus tag: MI149_30395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYTALLITPAGDVQEISVFTQSAINAILRDPSVDCLTSSDGVIDFWFRSAVPGRYRPNRQATGLLLSVTTFSVRTVPLLYGSVIVSSKSSEGRPLGLTTQDRRRLRDPGRLGRMWLHRRFHHAHDWTPPSRHQHHIEH
SIO_010081: MI149_RS30325
subclass of: SO_0000673
so part of: MI149_RS30325
location: 13440..13856
location: region:13440-13856:1
so has part: feature:13440-13856:1:exon

WP_262871827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13440-13856:1:exon

MI149_RS30330
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30330
old locus tag: MI149_30400
so part of: sequence
location: complement(14025..15164)
location: region:14025-15164:-1
so has part: feature:14025-15164:-1:exon
subclass of: SO_0000010

position:14025:-1
position: 14025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15164:-1
position: 15164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14025-15164:-1:exon

MI149_RS30330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30330
old locus tag: MI149_30400
EC number: 2.7.7.65
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005139632.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GGDEF domain-containing protein
translation: MAALGATMMSVISRRFWQSDHYNWLSGYLAARKMSGPTRAVMAFLSSSFVACLIVLLTSQDGPREPVPVAMTWIAVIGGLAGMALFTWRWPTRAQSLAFVVVVNTSIALACLAHPNPLAALIGCIAFATSGAYVAFFHSTGWMLYNFGVATMVATLQAVRLAMTGHPALAGVDWWLIVEVNVALPLGGQILVRALAGDLVRADTDPLTGLLNRRAFHRKALGMIHTRPSNANYLMVMLIDLDNFKALNDTHGHKAGDQALVHTARTLSATADPQAVIARIGGEEFLLATTAPTCTAESLATQLCTAIATTPERVTASIGAVCTPLDSTTPTDHDVLLEKLVAAADAAMYSAKRDGGNQVHHPDHPNTEQRSVRGTSDRN
SIO_010081: MI149_RS30330
subclass of: SO_0000673
so part of: MI149_RS30330
location: complement(14025..15164)
location: region:14025-15164:-1
so has part: feature:14025-15164:-1:exon

WP_262871828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14025-15164:-1:exon

MI149_RS30335
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30335
old locus tag: MI149_30405
so part of: sequence
location: 15372..16772
location: region:15372-16772:1
so has part: feature:15372-16772:1:exon
subclass of: SO_0000010

position:15372:1
position: 15372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16772:1
position: 16772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15372-16772:1:exon

MI149_RS30335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30335
old locus tag: MI149_30405
inference: COORDINATES: protein motif:HMM:TIGR00254.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GGDEF domain-containing protein
translation: MTASAVPTPMLSYRSWLPRLTSRVLLDLRIWMMGFGLLIGLIFPFAVVPLGVAHDVALRPAFFAATILAGLLVGAINTALVQMVVGVRLRALAVSMRRVEVSLREATETGDWSSCDPASCHVPVDSTDELGESADSFNHLVESLAASHRVNDGISAIGEALAAHLELASLAESTLHELTIRTGIDGAALLVVNAGRVDLVGSLGIRDASGLADSDAVQNVVRSHEVRVLHLPPEVTVTGTVVTFVPAEVRVLPVRHGVATVGVLVLAAARPMDREAVAVVESALPNLAVALTNALNHQDLQRVAALDPLTSVYNRRFGVERLKEEVARSQRSGDALGLLILDLDHFKSVNDTYGHLVGDQVLQSAVLATRQVLRDGDVLVRYGGEEFLVILPGAGRGDLTDMAERIRRSISETEILTGGHRLSITVSIGGAGLPDQVIRDPAELIGIADQALYSAKATGRDRSVIA
SIO_010081: MI149_RS30335
subclass of: SO_0000673
so part of: MI149_RS30335
location: 15372..16772
location: region:15372-16772:1
so has part: feature:15372-16772:1:exon

WP_262871829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15372-16772:1:exon

MI149_RS30340
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30340
old locus tag: MI149_30410
so part of: sequence
location: 16947..17534
location: region:16947-17534:1
so has part: feature:16947-17534:1:exon
subclass of: SO_0000010

position:16947:1
position: 16947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17534:1
position: 17534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16947-17534:1:exon

MI149_RS30340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30340
old locus tag: MI149_30410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012296238.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAAILGYARVSTTGQDLNAQRAALATAGVDPDRLFTDELSGAVGTQRPGLAALLDYARAGDIVVVAAIDRLGRSVAEVTGTIADLGNRQILLRALREGIDTATPTGRAVAAIMATLAELELELGRERRAASRDARRARHLPATKPDKLPPERQEQLRRLAGTGEPVHALAQAFGVSRATAYRYLAKLSSQPGVVS
SIO_010081: MI149_RS30340
subclass of: SO_0000673
so part of: MI149_RS30340
location: 16947..17534
location: region:16947-17534:1
so has part: feature:16947-17534:1:exon

WP_262871830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16947-17534:1:exon

MI149_RS30345
type: Gene
subclass of: SO_0000704
RO_0002162: 388459
locus tag: MI149_RS30345
old locus tag: MI149_30415
so part of: sequence
location: complement(17574..17705)
location: region:17574-17705:-1
so has part: feature:17574-17705:-1:exon
subclass of: SO_0000010

position:17574:-1
position: 17574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17705:-1
position: 17705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17574-17705:-1:exon

MI149_RS30345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 388459
locus tag: MI149_RS30345
old locus tag: MI149_30415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDALTALAMSSTTLRNRIDAEEVHHRLLDGVVVQDDTGLFNE
SIO_010081: MI149_RS30345
subclass of: SO_0000673
so part of: MI149_RS30345
location: complement(17574..17705)
location: region:17574-17705:-1
so has part: feature:17574-17705:-1:exon

WP_262871831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17574-17705:-1:exon