Aliivibrio fischeri MJ11 plasmid pMJ100, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio.
A single regulatory gene is sufficient to alter bacterial host range
Submitted (14-AUG-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001134.1.\nSource DNA is available from the ATCC (http://www.atcc.org/).\nBacteria available from the ATCC (http://www.atcc.org/).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 14:45:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,123\nCDSs (total) :: 3,973\nGenes (coding) :: 3,951\nCDSs (with protein) :: 3,951\nGenes (RNA) :: 150\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 124\nncRNAs :: 4\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 11 of 22\nPseudo Genes (incomplete) :: 11 of 22\nPseudo Genes (internal stop) :: 0 of 22\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF023254.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024754.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025438.2
COORDINATES: protein motif:HMM:NF013658.2
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017108004.1
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: similar to AA sequence:RefSeq:WP_004401540.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_012601284.1
COORDINATES: protein motif:HMM:NF023120.2
COORDINATES: similar to AA sequence:RefSeq:WP_005436258.1
COORDINATES: similar to AA sequence:RefSeq:WP_013743284.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004085611.1
COORDINATES: similar to AA sequence:RefSeq:WP_011735742.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF040699.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386655.1
COORDINATES: similar to AA sequence:RefSeq:WP_002039183.1
COORDINATES: protein motif:HMM:NF037528.2
COORDINATES: protein motif:HMM:NF017843.2
COORDINATES: protein motif:HMM:NF021896.2
disulfide isomerase DsbC N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013878.2
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF022136.2
COORDINATES: protein motif:HMM:NF028242.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF023713.2
DotH/IcmK family type IV secretion protein
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: protein motif:HMM:NF016855.2
TfoX/Sxy family DNA transformation protein
COORDINATES: protein motif:HMM:NF037959.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF021428.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_011875441.1
COORDINATES: similar to AA sequence:RefSeq:WP_017041770.1
COORDINATES: similar to AA sequence:RefSeq:WP_005386210.1
COORDINATES: similar to AA sequence:RefSeq:WP_012534578.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010554106.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554105.1
COORDINATES: similar to AA sequence:RefSeq:WP_012604178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007643708.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009706961.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03501.1
This protein contains a GlyGly-CTERM protein-sorting domain, as detected by TIGR03501. These domains are found at the C-terminus of secreted proteins in organisms that possess both rhombosortase, which is an intramembrane serine proteinase (see TIGR03902), and a type II secretion system (T2SS). In at least some cases, such as VesB from Vibrio cholerae, cleavage by rhombosortase is followed first by attachment of a glycerophosphoethanolamine-containing moiety, then by transport by the T2SS across the outer membrane and release into the medium in soluble form; Derived by automated computational analysis using gene prediction method: Protein Homology.
GlyGly-CTERM sorting domain-containing protein