Kocuria turfanensis strain HO-9042 plasmid unnamed5, complete sequence.
Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.
Draft genome of Kocuria turfanensis strain HO-9042, which cultured from desert in Xinjiang China
Submitted (18-FEB-2016) College of Biotechnology, Hubei University of Technology, No. 28, Nanli Road, Hong-Shan District, Wuchang 430068, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014484.1.\nSource bacteria available from College of Bioengineering, Hubei\nUniversity of Technology, Wuhan, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.3\nGenome Coverage :: 400.0\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:11:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,870\nCDSs (total) :: 3,806\nGenes (coding) :: 3,729\nCDSs (with protein) :: 3,729\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 77\nCDSs (without protein) :: 77\nPseudo Genes (ambiguous residues) :: 0 of 77\nPseudo Genes (frameshifted) :: 23 of 77\nPseudo Genes (incomplete) :: 51 of 77\nPseudo Genes (internal stop) :: 9 of 77\nPseudo Genes (multiple problems) :: 5 of 77\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013618.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019481165.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_006214431.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_006945799.1
COORDINATES: similar to AA sequence:RefSeq:WP_009481981.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011538920.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017983621.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011897899.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017834434.1
COORDINATES: similar to AA sequence:RefSeq:WP_016998066.1
COORDINATES: similar to AA sequence:RefSeq:WP_014674143.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611981.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014177.2
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006086665.1
adenine-specific methyltransferase EcoRI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011931183.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881767.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623289.1
COORDINATES: similar to AA sequence:RefSeq:WP_011928026.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017832691.1
COORDINATES: protein motif:HMM:NF013718.2