Kocuria turfanensis strain HO-9042 plasmid unnamed4, complete sequence.
Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.
Draft genome of Kocuria turfanensis strain HO-9042, which cultured from desert in Xinjiang China
Submitted (18-FEB-2016) College of Biotechnology, Hubei University of Technology, No. 28, Nanli Road, Hong-Shan District, Wuchang 430068, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014483.1.\nSource bacteria available from College of Bioengineering, Hubei\nUniversity of Technology, Wuhan, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.3\nGenome Coverage :: 400.0\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:11:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,870\nCDSs (total) :: 3,806\nGenes (coding) :: 3,729\nCDSs (with protein) :: 3,729\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 77\nCDSs (without protein) :: 77\nPseudo Genes (ambiguous residues) :: 0 of 77\nPseudo Genes (frameshifted) :: 23 of 77\nPseudo Genes (incomplete) :: 51 of 77\nPseudo Genes (internal stop) :: 9 of 77\nPseudo Genes (multiple problems) :: 5 of 77\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013618.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017832690.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: protein motif:HMM:NF039499.1
COORDINATES: protein motif:HMM:NF020332.2
conjugative relaxase TrwC/TraI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011931161.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009750110.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834500.1
COORDINATES: similar to AA sequence:RefSeq:WP_020501615.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020501614.1
COORDINATES: similar to AA sequence:RefSeq:WP_017973012.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_014927684.1
COORDINATES: similar to AA sequence:RefSeq:WP_012397797.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_006214431.1
COORDINATES: similar to AA sequence:RefSeq:WP_019311212.1
COORDINATES: similar to AA sequence:RefSeq:WP_020511088.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039718.1
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012299629.1
COORDINATES: protein motif:HMM:NF012420.2
COORDINATES: similar to AA sequence:RefSeq:WP_013678335.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009376654.1
COORDINATES: similar to AA sequence:RefSeq:WP_008717212.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017489333.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013602558.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013600527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015401455.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833775.1
COORDINATES: similar to AA sequence:RefSeq:WP_013704806.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611777.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832697.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481796.1
COORDINATES: similar to AA sequence:RefSeq:WP_018873518.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_020393448.1
COORDINATES: similar to AA sequence:RefSeq:WP_005883265.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013347398.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_018762466.1
COORDINATES: similar to AA sequence:RefSeq:WP_011928026.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017832691.1