Kocuria turfanensis strain HO-9042 plasmid unnamed2, complete sequence.
Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.
Draft genome of Kocuria turfanensis strain HO-9042, which cultured from desert in Xinjiang China
Submitted (18-FEB-2016) College of Biotechnology, Hubei University of Technology, No. 28, Nanli Road, Hong-Shan District, Wuchang 430068, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014482.1.\nSource bacteria available from College of Bioengineering, Hubei\nUniversity of Technology, Wuhan, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.3\nGenome Coverage :: 400.0\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:11:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,870\nCDSs (total) :: 3,806\nGenes (coding) :: 3,729\nCDSs (with protein) :: 3,729\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 77\nCDSs (without protein) :: 77\nPseudo Genes (ambiguous residues) :: 0 of 77\nPseudo Genes (frameshifted) :: 23 of 77\nPseudo Genes (incomplete) :: 51 of 77\nPseudo Genes (internal stop) :: 9 of 77\nPseudo Genes (multiple problems) :: 5 of 77\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024673.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_100160675.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017832712.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010144813.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019484296.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003848338.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003848340.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017833463.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011693662.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017833461.1
COORDINATES: protein motif:HMM:NF015763.2
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007633941.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777007.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833026.1
COORDINATES: protein motif:HMM:NF012420.2
COORDINATES: similar to AA sequence:RefSeq:WP_014375665.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832018.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012397137.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017488132.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018604088.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_020105055.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009356601.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777131.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011014416.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762725.1
COORDINATES: similar to AA sequence:RefSeq:WP_014988867.1
COORDINATES: similar to AA sequence:RefSeq:WP_014988866.1
COORDINATES: protein motif:HMM:NF033748.1
COORDINATES: protein motif:HMM:NF017691.2
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019481856.1
GO:0031012 - extracellular matrix [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015076.2
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: similar to AA sequence:RefSeq:WP_017834433.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834426.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018762152.1
LysM peptidoglycan-binding domain-containing M23 family metallopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_014316116.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003951585.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623512.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623510.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623508.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623506.1
COORDINATES: similar to AA sequence:RefSeq:WP_003849952.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623521.1
cytochrome c biogenesis CcdA family protein
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_016997175.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779732.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834365.1
MobC family plasmid mobilization relaxosome protein
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017834367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689715.1
COORDINATES: protein motif:HMM:NF024108.2
COORDINATES: similar to AA sequence:RefSeq:WP_006901488.1
COORDINATES: similar to AA sequence:RefSeq:WP_017975732.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005054047.1
COORDINATES: similar to AA sequence:RefSeq:WP_014140011.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014145365.1
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020638331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018560346.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
glutamate-cysteine ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019310460.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019311202.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_002854083.1
COORDINATES: similar to AA sequence:RefSeq:WP_005179570.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603036.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007273201.1
COORDINATES: similar to AA sequence:RefSeq:WP_019050326.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923400.1
COORDINATES: similar to AA sequence:RefSeq:WP_005505601.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689648.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832477.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_014375727.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578671.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311269.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011776986.1
COORDINATES: similar to AA sequence:RefSeq:WP_006215801.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923389.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019311265.1
COORDINATES: similar to AA sequence:RefSeq:WP_019311264.1
COORDINATES: similar to AA sequence:RefSeq:WP_006213230.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311190.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003860188.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311257.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012398492.1
COORDINATES: similar to AA sequence:RefSeq:WP_031349784.1
COORDINATES: similar to AA sequence:RefSeq:WP_013602732.1
COORDINATES: similar to AA sequence:RefSeq:WP_012397438.1
COORDINATES: protein motif:HMM:NF016149.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019309189.1
COORDINATES: protein motif:HMM:TIGR00696.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
GO:0043163 - cell envelope organization [Evidence IEA]
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017834287.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776959.1
COORDINATES: similar to AA sequence:RefSeq:WP_012037555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689624.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831802.1
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012455.2
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311287.1
GO:0055051 - ATP-binding cassette (ABC) transporter complex, integrated substrate binding [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033230 - ABC-type cysteine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0033228 - cysteine export across plasma membrane [Evidence IEA]
thiol reductant ABC exporter subunit CydD
COORDINATES: similar to AA sequence:RefSeq:WP_019311286.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_019311285.1
COORDINATES: similar to AA sequence:RefSeq:WP_012245810.1
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018190887.1