Kocuria turfanensis strain HO-9042 plasmid unnamed1.
Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.
Draft genome of Kocuria turfanensis strain HO-9042, which cultured from desert in Xinjiang China
Submitted (18-FEB-2016) College of Biotechnology, Hubei University of Technology, No. 28, Nanli Road, Hong-Shan District, Wuchang 430068, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014481.1.\nSource bacteria available from College of Bioengineering, Hubei\nUniversity of Technology, Wuhan, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.3\nGenome Coverage :: 400.0\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:11:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,870\nCDSs (total) :: 3,806\nGenes (coding) :: 3,729\nCDSs (with protein) :: 3,729\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 77\nCDSs (without protein) :: 77\nPseudo Genes (ambiguous residues) :: 0 of 77\nPseudo Genes (frameshifted) :: 23 of 77\nPseudo Genes (incomplete) :: 51 of 77\nPseudo Genes (internal stop) :: 9 of 77\nPseudo Genes (multiple problems) :: 5 of 77\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_011739457.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012397797.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010205969.1
COORDINATES: similar to AA sequence:RefSeq:WP_015794828.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832697.1
COORDINATES: similar to AA sequence:RefSeq:WP_003885861.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834561.1
COORDINATES: protein motif:HMM:NF017691.2
excalibur calcium-binding domain-containing protein
COORDINATES: protein motif:HMM:NF023202.2
COORDINATES: similar to AA sequence:RefSeq:WP_016997370.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762466.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882287.1
COORDINATES: similar to AA sequence:RefSeq:WP_013601174.1
COORDINATES: similar to AA sequence:RefSeq:WP_013162087.1
COORDINATES: similar to AA sequence:RefSeq:WP_009481405.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015799.2
COORDINATES: similar to AA sequence:RefSeq:WP_015650325.1
GO:0055085 - transmembrane transport [Evidence IEA]
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003798333.1
COORDINATES: similar to AA sequence:RefSeq:WP_010155374.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007273086.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011928026.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006215124.1
COORDINATES: similar to AA sequence:RefSeq:WP_019667931.1
COORDINATES: similar to AA sequence:RefSeq:WP_006215122.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
leucine zipper domain-containing protein
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_011776893.1
COORDINATES: similar to AA sequence:RefSeq:WP_016997378.1
COORDINATES: protein motif:HMM:NF036806.2
COORDINATES: similar to AA sequence:RefSeq:WP_019481164.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_008709911.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_020706869.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_006554860.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002854299.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015400611.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896427.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017831869.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015650353.1
COORDINATES: similar to AA sequence:RefSeq:WP_019310386.1
COORDINATES: similar to AA sequence:RefSeq:WP_019310387.1
four-helix bundle copper-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_019311264.1
COORDINATES: similar to AA sequence:RefSeq:WP_018769553.1
COORDINATES: similar to AA sequence:RefSeq:WP_010849400.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402241.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015401895.1
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017197916.1
COORDINATES: similar to AA sequence:RefSeq:WP_020018250.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776924.1
COORDINATES: similar to AA sequence:RefSeq:WP_006944982.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776926.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010145865.1
COORDINATES: similar to AA sequence:RefSeq:WP_015303617.1
COORDINATES: similar to AA sequence:RefSeq:WP_008359731.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017792363.1
COORDINATES: similar to AA sequence:RefSeq:WP_017792364.1
COORDINATES: similar to AA sequence:RefSeq:WP_017829335.1
COORDINATES: similar to AA sequence:RefSeq:WP_014676843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006821352.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_006387583.1
COORDINATES: similar to AA sequence:RefSeq:WP_003805295.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011691831.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013602624.1
ABC transporter substrate-binding protein
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020075997.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358066.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018775511.1
COORDINATES: similar to AA sequence:RefSeq:WP_019311206.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018657796.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003849952.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013884812.1
COORDINATES: similar to AA sequence:RefSeq:WP_013884813.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010982072.1
COORDINATES: similar to AA sequence:RefSeq:WP_016463647.1
COORDINATES: similar to AA sequence:RefSeq:WP_016998066.1
COORDINATES: similar to AA sequence:RefSeq:WP_010155354.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007633606.1
COORDINATES: similar to AA sequence:RefSeq:WP_018763356.1
COORDINATES: similar to AA sequence:RefSeq:WP_018763355.1
COORDINATES: similar to AA sequence:RefSeq:WP_019309314.1
PRC and DUF2382 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014348850.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017834449.1
COORDINATES: similar to AA sequence:RefSeq:WP_012836052.1
COORDINATES: protein motif:HMM:NF015378.2
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611777.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_016700549.1
COORDINATES: similar to AA sequence:RefSeq:WP_016700548.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024788.2
PLDc N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_006214431.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833775.1
COORDINATES: similar to AA sequence:RefSeq:WP_020141081.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017972473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008717212.1
COORDINATES: protein motif:HMM:NF033611.0
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037736.2