Moraxella bovoculi strain 58086 plasmid unnamed, complete sequence.
type: Entry
definition: Moraxella bovoculi strain 58086 plasmid unnamed, complete sequence.
sequence version: NZ_CP031768.1
sequence date: 2023-03-13
sequence: sequence
division: CON
label: NZ_CP031768.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03577770
keyword: RefSeq
source: Moraxella bovoculi
organism: Moraxella bovoculi
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella.
reference: 1
references: 26872821
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031768.1.\nBacteria and source DNA available from USMARC.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-AUG-2018\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 713.217x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 11:51:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,033\nCDSs (total) :: 1,968\nGenes (coding) :: 1,928\nCDSs (with protein) :: 1,928\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 16 of 40\nPseudo Genes (incomplete) :: 24 of 40\nPseudo Genes (internal stop) :: 15 of 40\nPseudo Genes (multiple problems) :: 12 of 40\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 3320
topology: circular
so has quality: SO_0000988
location: 1..3320
location: region:1-3320:1
RO_0002162: 386891

NZ_CP031768
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03577770
type: BioSample
SIO_000068: biosample

1
title: Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle
author: Dickey, A.M.
author: Loy, J.D.
author: Bono, J.L.
author: Smith, T.P.
author: Apley, M.D.
author: Lubbers, B.V.
author: DeDonder, K.D.
author: Capik, S.F.
author: Larson, R.L.
author: White, B.J.
author: Blom, J.
author: Chitko-McKown, C.G.
author: Clawson, M.L.
journal: Vet Res 47, 31 (2016)
pubmed: 26872821
comments: Publication Status: Online-Only

26872821
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Dickey, A.
author: Clawson, M.
author: Bono, J.
author: Loy, J.D.
journal: Submitted (21-AUG-2018) USMARC, USDA, 844 Rd 313, Clay Center, NE 68933, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3320:1
position: 3320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3320:1:source
so part of: sequence
organism: Moraxella bovoculi
mol type: genomic DNA
strain: 58086
isolation source: Eye swab
host: Bos taurus
plasmid: unnamed
country: USA: Virginia
collection date: 2013-06-12

386891
type: Taxonomy
SIO_000068: taxonomy

AAX10_RS09980
type: Gene
subclass of: SO_0000704
RO_0002162: 386891
gene: repM
locus tag: AAX10_RS09980
old locus tag: AAX10_10285
so part of: sequence
location: 1..957
location: region:1-957:1
so has part: feature:1-957:1:exon
subclass of: SO_0000010

position:957:1
position: 957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-957:1:exon

AAX10_RS09980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386891
gene: repM
locus tag: AAX10_RS09980
old locus tag: AAX10_10285
inference: COORDINATES: protein motif:HMM:NF038290.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MGSLIVKDNALVEASHKLGEVEQRLILLAILKAREVGDTVEQLRGKELIIHADDYAKTFGISQQMAYHALKKAVMGLFEAKWGYKYINDKGNKVVRYERFTQSAQYVEGEGLVSFKFADAIIPMLVELERRFTSYEIEQVAQLSSQYAMRLYEFFVRHLDKKTGTGWLDISLDDLRFRFGLLPNEYKTMSNFKAYVLDFSLKQINEYTDLSATYTQKKQGRKIVGFTFTFKAKTKSKKTPKPPLERDTNTFDMLAPISMTDKQRQMFATKLAELSELGEYAPSGASYQEYAKKIEKELLDREKAEFYRPYLEKLGFKA
SIO_010081: AAX10_RS09980
subclass of: SO_0000673
so part of: AAX10_RS09980
location: 1..957
location: region:1-957:1
so has part: feature:1-957:1:exon

WP_193550999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-957:1:exon

AAX10_RS09985
type: Gene
subclass of: SO_0000704
RO_0002162: 386891
locus tag: AAX10_RS09985
old locus tag: AAX10_10290
so part of: sequence
location: complement(1025..1282)
location: region:1025-1282:-1
so has part: feature:1025-1282:-1:exon
subclass of: SO_0000010

position:1025:-1
position: 1025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1282:-1
position: 1282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1282:-1:exon

AAX10_RS09985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386891
locus tag: AAX10_RS09985
old locus tag: AAX10_10290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003785127.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MLQVKTSKDFDRDLRKIKLSTNLVAVLAYLSRGEVLPTKYKDHTLTGNWSGWRDCHVANDLVLIYRIDGEILHLARLNSHSEVFG
SIO_010081: AAX10_RS09985
subclass of: SO_0000673
so part of: AAX10_RS09985
location: complement(1025..1282)
location: region:1025-1282:-1
so has part: feature:1025-1282:-1:exon

WP_149038916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1282:-1:exon

AAX10_RS09990
type: Gene
subclass of: SO_0000704
RO_0002162: 386891
locus tag: AAX10_RS09990
old locus tag: AAX10_10295
so part of: sequence
location: complement(1260..1547)
location: region:1260-1547:-1
so has part: feature:1260-1547:-1:exon
subclass of: SO_0000010

position:1260:-1
position: 1260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1547:-1
position: 1547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1260-1547:-1:exon

AAX10_RS09990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386891
locus tag: AAX10_RS09990
old locus tag: AAX10_10295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003656617.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MTTSNLNIRIDDDLKHQAKAILDGYGISPSQAVKMLFLELVATRKFPLNLSYQAEYQPNATTIRAMQELDNGGGKLYANLDELLAEHGYATSQDQ
SIO_010081: AAX10_RS09990
subclass of: SO_0000673
so part of: AAX10_RS09990
location: complement(1260..1547)
location: region:1260-1547:-1
so has part: feature:1260-1547:-1:exon

WP_149038917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1260-1547:-1:exon

AAX10_RS09995
type: Gene
subclass of: SO_0000704
RO_0002162: 386891
locus tag: AAX10_RS09995
old locus tag: AAX10_10300
so part of: sequence
location: 1763..2017
location: region:1763-2017:1
so has part: feature:1763-2017:1:exon
subclass of: SO_0000010

position:1763:1
position: 1763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2017:1
position: 2017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1763-2017:1:exon

AAX10_RS09995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386891
locus tag: AAX10_RS09995
old locus tag: AAX10_10300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEHGNKTTGLFIMKTNAENQKKYRENQINKGSKRLDTYIDAENSKQLEYLVKEMGLSKRAIIEILISTEFTRLKGYNLAKTKKL
SIO_010081: AAX10_RS09995
subclass of: SO_0000673
so part of: AAX10_RS09995
location: 1763..2017
location: region:1763-2017:1
so has part: feature:1763-2017:1:exon

WP_149038918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1763-2017:1:exon

AAX10_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 386891
locus tag: AAX10_RS10000
old locus tag: AAX10_10305
so part of: sequence
location: complement(2684..2980)
location: region:2684-2980:-1
so has part: feature:2684-2980:-1:exon
subclass of: SO_0000010

position:2684:-1
position: 2684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2980:-1
position: 2980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2684-2980:-1:exon

AAX10_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386891
locus tag: AAX10_RS10000
old locus tag: AAX10_10305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDETDEILHTIKRMVRQSLYDMEMDKQRFENEKLGRQAHISKMQAQLDAEAEERKARIAKMQAEQEKIIKETKLYPWVALLIVILAICGTIFKLLQS
SIO_010081: AAX10_RS10000
subclass of: SO_0000673
so part of: AAX10_RS10000
location: complement(2684..2980)
location: region:2684-2980:-1
so has part: feature:2684-2980:-1:exon

WP_149038919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2684-2980:-1:exon