Amblyraja radiata isolate CabotCenter1 chromosome 42, sAmbRad1.1.pri, whole genome shotgun sequence.
type: Entry
definition: Amblyraja radiata isolate CabotCenter1 chromosome 42, sAmbRad1.1.pri, whole genome shotgun sequence.
sequence version: NC_045997.1
sequence date: 2021-04-05
sequence: sequence
division: CON
label: NC_045997.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA610638
dblink: SAMN09948523
keyword: WGS
keyword: RefSeq
source: Amblyraja radiata (thorny skate)
organism: Amblyraja radiata
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021407.1.\nAssembly name: sAmbRad1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/02/21. The original whole-genome shotgun project has the\naccession JAAGWR000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 13-JAN-2020\nAssembly Method :: Canu v. 1.7; purge_haplotigs v. bitbucket\n 7.10.2018; scaff10x v. 4.1.0; Bionano\n Solve DLS v. 3.3; Salsa HiC v. 2.2; Arrow\n smrtanalysis Pacbio polishing & gap\n filling v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes Illumina polishing v.\n 1.3.1; purge_dups v.\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n gEVAL manual curation v. 2020-01-13; VGP\n assembly pipeline v. 1.5\nAssembly Name :: sAmbRad1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 128.24x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima\n Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Updated annotation\nAnnotation Name :: Amblyraja radiata Updated Annotation\n Release 100.20210331\nAnnotation Version :: 100.20210331\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; propagated\n RefSeq model\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 8043318
topology: linear
so has quality: SO_0000987
location: 1..8043318
location: region:1-8043318:1
RO_0002162: 386614

NC_045997
type: RefSeq
SIO_000068: refseq

PRJNA610638
type: BioProject
SIO_000068: bioproject

SAMN09948523
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8043318:1
position: 8043318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8043318:1:source
so part of: sequence
organism: Amblyraja radiata
mol type: genomic DNA
isolate: CabotCenter1
chromosome: 42
sex: male
tissue type: testis, liver
country: USA: Gulf of Main
lat lon: 43.1336 N 68.3266 W
collection date: 2017-09-18
collected by: Jeff Kneebone

386614
type: Taxonomy
SIO_000068: taxonomy

LOC116967963
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967963
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9094..9973
location: region:9094-9973:1
so has part: feature:9094-9973:1:exon
subclass of: SO_0000010

116967963
type: Gene
SIO_000068: ncbigene

position:9094:1
position: 9094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9973:1
position: 9973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9094-9973:1:exon

LOC116967963
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967963
product: zinc finger protein 501-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_033014597.1
SIO_010081: LOC116967963
subclass of: SO_0000673
so part of: LOC116967963
location: join(9094..9294,9493..9973)
location: region:9094-9973:1
so has part: feature:9094-9294:1:exon
so has part: feature:9493-9973:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9094-9294:1:exon

position:9294:1
position: 9294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9493-9973:1:exon

position:9493:1
position: 9493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967963
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967963
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 501-like
translation: MEDHMVGHNKEKRYEYDVCGKACQSPSQLQTHRRVHTGEKPYCCSACGKSFSRLSGLQRHQRVHSSERLFNCSDCGKGFNLSTHLKVHRRLHSGEWPYICSDCGKSFTQSCQLLEHKRTHAGERP
SIO_010081: LOC116967963
subclass of: SO_0000673
so part of: LOC116967963
location: join(9262..9294,9493..9837)
location: region:9262-9837:1
so has part: feature:9262-9294:1:exon
so has part: feature:9493-9837:1:exon

XP_032870488.1
type: Protein
SIO_000068: ncbiprotein

position:9262:1
position: 9262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9837:1
position: 9837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9262-9294:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9493-9837:1:exon

LOC116967965
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967965
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14902..27705)
location: region:14902-27705:-1
so has part: feature:14902-27705:-1:exon
subclass of: SO_0000011

116967965
type: Gene
SIO_000068: ncbigene

position:14902:-1
position: 14902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27705:-1
position: 27705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14902-27705:-1:exon

LOC116967965
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967965
product: uncharacterized LOC116967965
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004410366.1
SIO_010081: LOC116967965
subclass of: SO_0000673
so part of: LOC116967965
location: complement(join(14902..15115,25872..25876,27695..27705))
location: region:14902-27705:-1
so has part: feature:27695-27705:-1:exon
so has part: feature:25872-25876:-1:exon
so has part: feature:14902-15115:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27695-27705:-1:exon

position:27695:-1
position: 27695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:25872-25876:-1:exon

position:25872:-1
position: 25872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25876:-1
position: 25876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14902-15115:-1:exon

position:15115:-1
position: 15115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116967964
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967964
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 44621..53930
location: region:44621-53930:1
so has part: feature:44621-53930:1:exon
subclass of: SO_0000010

116967964
type: Gene
SIO_000068: ncbigene

position:44621:1
position: 44621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53930:1
position: 53930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44621-53930:1:exon

LOC116967964
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967964
product: zinc finger protein OZF-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033014598.1
SIO_010081: LOC116967964
subclass of: SO_0000673
so part of: LOC116967964
location: join(44621..44665,52420..53090,53175..53930)
location: region:44621-53930:1
so has part: feature:44621-44665:1:exon
so has part: feature:52420-53090:1:exon
so has part: feature:53175-53930:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44621-44665:1:exon

position:44665:1
position: 44665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:52420-53090:1:exon

position:52420:1
position: 52420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53090:1
position: 53090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:53175-53930:1:exon

position:53175:1
position: 53175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967964
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967964
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein OZF-like
translation: MAGHNKEKHYECEVCGKAWQYPSSLEIHRRVHTGERPFDCSECGKDFKMAHHLKMHQKVHTGEKPYGCSTCGKSFTRMSGLREHRRVHSSERPFTCSDCGKGFKSSQDLKVHRRVHTGKRPYTCSDCGKDFSRYSNLLKHQHIHTGERPYTCAQCSKGFTQSYHLLEHQRTHTGERPYACDDCGKGFARSASVLEHQRTHTGERPYTCAQCGKSFIRNKNLLSHQRIHTGERPYTCSHCGKGFTQTSILLVHQRTHTGERPYTCALCGKGFSRSTYLLNHKRSHTGERPYNCAQCGKGFTQSHHLLENQRSHTGERSYTCAQCGKAFTRSSGLRSHQRVHTGDRPFPSSVCGEGFAMASHALSHQHVHTSGQPYDCPYCGESFDSSRGLRQHQRTHAGEQMLPLREALQESTGAVGAPADTHQRETLCVR
SIO_010081: LOC116967964
subclass of: SO_0000673
so part of: LOC116967964
location: join(52550..53090,53175..53926)
location: region:52550-53926:1
so has part: feature:52550-53090:1:exon
so has part: feature:53175-53926:1:exon

XP_032870489.1
type: Protein
SIO_000068: ncbiprotein

position:52550:1
position: 52550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53926:1
position: 53926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52550-53090:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53175-53926:1:exon

LOC116967961
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967961
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(122322..123844)
location: region:122322-123844:-1
so has part: feature:122322-123844:-1:exon
subclass of: SO_0000010

116967961
type: Gene
SIO_000068: ncbigene

position:122322:-1
position: 122322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123844:-1
position: 123844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122322-123844:-1:exon

LOC116967961
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967961
product: muscarinic acetylcholine receptor M2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033014596.1
SIO_010081: LOC116967961
subclass of: SO_0000673
so part of: LOC116967961
location: complement(122322..123844)
location: region:122322-123844:-1
so has part: feature:122322-123844:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:122322-123844:-1:exon

LOC116967961
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967961
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: muscarinic acetylcholine receptor M2-like
translation: MANTTGPNGSVGNFTDIDAGSPYETVEVVFIVIVAGSLSLVTIIGNILVMVSIKVNRHLQTINNYFIFSLACADLIIGVFSMNLYTIYIVMGSWPMGPVVCDLWLALDYVVSNASAMHLLVISFDRYFCVTKPLSYPVKRTNKMAGMMIAAAWVLSFILWAPAILFWQFIVGERKVPQGECYVQFLSNPVVTFGTAIAAFYLPVIIMAILYVHISRASKSRIKKDEREPELNKGAAVSPSLARGKLTKLNNNNNNNGSSPLGGLPLVKVQNGKAVGETAMENCGQGEEKEMSNYSTSVSVVPSTQKEEVAVYEATRVTSVPPPASTDRFRVDGSKFSCIKSESSEYCTESAVKIAVANSDWSNGRERELAAARKIVRVTKTPAKKKKKGAVSRERKVTKTILAILLAFIITWTPYNVMVLINTFCSICVPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHILLCQYKNIGATR
SIO_010081: LOC116967961
subclass of: SO_0000673
so part of: LOC116967961
location: complement(122371..123807)
location: region:122371-123807:-1
so has part: feature:122371-123807:-1:exon

XP_032870487.1
type: Protein
SIO_000068: ncbiprotein

position:122371:-1
position: 122371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123807:-1
position: 123807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122371-123807:-1:exon

LOC116967957
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967957
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 445847..462329
location: region:445847-462329:1
so has part: feature:445847-462329:1:exon
subclass of: SO_0000010

116967957
type: Gene
SIO_000068: ncbigene

position:445847:1
position: 445847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462329:1
position: 462329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:445847-462329:1:exon

LOC116967957
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967957
product: zinc finger protein OZF-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033014593.1
SIO_010081: LOC116967957
subclass of: SO_0000673
so part of: LOC116967957
location: join(445847..445994,452926..453091,460949..462279,462323..462329)
location: region:445847-462329:1
so has part: feature:445847-445994:1:exon
so has part: feature:452926-453091:1:exon
so has part: feature:460949-462279:1:exon
so has part: feature:462323-462329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:445847-445994:1:exon

position:445994:1
position: 445994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:452926-453091:1:exon

position:452926:1
position: 452926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:453091:1
position: 453091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:460949-462279:1:exon

position:460949:1
position: 460949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462279:1
position: 462279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:462323-462329:1:exon

position:462323:1
position: 462323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967957
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967957
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein OZF-like
translation: MAGHKEKRYECEVCGKAWQYPSSLEIHRRVHTGERPFDCSECGKDFKMAQHLKLHQQLHTGEKPYGCPTCGKSFARISRLREHRRVHSSKRPFTCSDCGKGFKSSQDLKVHRRVHNGKQPYTCSDCGKDFSSSSNLLKHKRIHTGERPYTCVQCGKGFTQSHHLLSHQRIHTGERPYTCNDCGKGFARSDILLEHQRIHTGERPYTCSHCGKCFSQSSILLVHQRSHTGERPYTCALCGKDFSRSSYLLNHQRSHTGERPYNCAQCGKVFTESHHLLEHQRSHTDERSYTCAQCGKGFTRSSGLRSHQRVHAGNRPFPSSMCGEGFAMASHALSHQHVHTSGQPYDCPYCGESFDSSRGLRQHQRTHAGERLLPLREALQESTGAAGAPEDTHQRETLQ
SIO_010081: LOC116967957
subclass of: SO_0000673
so part of: LOC116967957
location: join(461087..462279,462323..462329)
location: region:461087-462329:1
so has part: feature:461087-462279:1:exon
so has part: feature:462323-462329:1:exon

XP_032870484.1
type: Protein
SIO_000068: ncbiprotein

position:461087:1
position: 461087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461087-462279:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:462323-462329:1:exon

LOC116967960
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967960
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1645381..1647621
location: region:1645381-1647621:1
so has part: feature:1645381-1647621:1:exon
subclass of: SO_0000011

116967960
type: Gene
SIO_000068: ncbigene

position:1645381:1
position: 1645381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1647621:1
position: 1647621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1645381-1647621:1:exon

LOC116967960
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967960
product: uncharacterized LOC116967960
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004410365.1
SIO_010081: LOC116967960
subclass of: SO_0000673
so part of: LOC116967960
location: join(1645381..1645652,1647395..1647398,1647589..1647621)
location: region:1645381-1647621:1
so has part: feature:1645381-1645652:1:exon
so has part: feature:1647395-1647398:1:exon
so has part: feature:1647589-1647621:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1645381-1645652:1:exon

position:1645652:1
position: 1645652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1647395-1647398:1:exon

position:1647395:1
position: 1647395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1647398:1
position: 1647398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1647589-1647621:1:exon

position:1647589:1
position: 1647589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967956
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967956
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1791425..1808890)
location: region:1791425-1808890:-1
so has part: feature:1791425-1808890:-1:exon
subclass of: SO_0000011

116967956
type: Gene
SIO_000068: ncbigene

position:1791425:-1
position: 1791425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1808890:-1
position: 1808890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1791425-1808890:-1:exon

LOC116967956
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967956
product: uncharacterized LOC116967956
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004410364.1
SIO_010081: LOC116967956
subclass of: SO_0000673
so part of: LOC116967956
location: complement(join(1791425..1791532,1808858..1808890))
location: region:1791425-1808890:-1
so has part: feature:1808858-1808890:-1:exon
so has part: feature:1791425-1791532:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1808858-1808890:-1:exon

position:1808858:-1
position: 1808858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1791425-1791532:-1:exon

position:1791532:-1
position: 1791532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116967955
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967955
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1818929..1821919)
location: region:1818929-1821919:-1
so has part: feature:1818929-1821919:-1:exon
subclass of: SO_0000011

116967955
type: Gene
SIO_000068: ncbigene

position:1818929:-1
position: 1818929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1821919:-1
position: 1821919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1818929-1821919:-1:exon

LOC116967955
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967955
product: uncharacterized LOC116967955
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004410363.1
SIO_010081: LOC116967955
subclass of: SO_0000673
so part of: LOC116967955
location: complement(join(1818929..1819535,1821890..1821919))
location: region:1818929-1821919:-1
so has part: feature:1821890-1821919:-1:exon
so has part: feature:1818929-1819535:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1821890-1821919:-1:exon

position:1821890:-1
position: 1821890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1818929-1819535:-1:exon

position:1819535:-1
position: 1819535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116967969
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967969
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(5713049..5713240)
location: region:5713049-5713240:-1
so has part: feature:5713049-5713240:-1:exon
subclass of: SO_0000623

116967969
type: Gene
SIO_000068: ncbigene

position:5713049:-1
position: 5713049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5713240:-1
position: 5713240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5713049-5713240:-1:exon

LOC116967969
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116967969
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004410370.1
SIO_010081: LOC116967969
subclass of: SO_0000673
so part of: LOC116967969
location: complement(5713049..5713240)
location: region:5713049-5713240:-1
so has part: feature:5713049-5713240:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5713049-5713240:-1:exon

LOC116967966
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967966
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5774612..5792816
location: region:5774612-5792816:1
so has part: feature:5774612-5792816:1:exon
subclass of: SO_0000011

116967966
type: Gene
SIO_000068: ncbigene

position:5774612:1
position: 5774612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5792816:1
position: 5792816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5774612-5792816:1:exon

LOC116967966
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967966
product: uncharacterized LOC116967966
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004410367.1
SIO_010081: LOC116967966
subclass of: SO_0000673
so part of: LOC116967966
location: join(5774612..5774707,5792553..5792557,5792807..5792816)
location: region:5774612-5792816:1
so has part: feature:5774612-5774707:1:exon
so has part: feature:5792553-5792557:1:exon
so has part: feature:5792807-5792816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5774612-5774707:1:exon

position:5774707:1
position: 5774707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5792553-5792557:1:exon

position:5792553:1
position: 5792553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5792557:1
position: 5792557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5792807-5792816:1:exon

position:5792807:1
position: 5792807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967968
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967968
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5787385..5811389)
location: region:5787385-5811389:-1
so has part: feature:5787385-5811389:-1:exon
subclass of: SO_0000011

116967968
type: Gene
SIO_000068: ncbigene

position:5787385:-1
position: 5787385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5811389:-1
position: 5811389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5787385-5811389:-1:exon

LOC116967968
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967968
product: uncharacterized LOC116967968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004410369.1
SIO_010081: LOC116967968
subclass of: SO_0000673
so part of: LOC116967968
location: complement(join(5787385..5787498,5811188..5811389))
location: region:5787385-5811389:-1
so has part: feature:5811188-5811389:-1:exon
so has part: feature:5787385-5787498:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5811188-5811389:-1:exon

position:5811188:-1
position: 5811188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5787385-5787498:-1:exon

position:5787498:-1
position: 5787498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116967958
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967958
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<5825920..5826984)
location: region:5825920-5826984:-1
so has part: feature:5825920-5826984:-1:exon
subclass of: SO_0000010

116967958
type: Gene
SIO_000068: ncbigene

position:5825920:-1
position: 5825920
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5826984:-1
position: 5826984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5825920-5826984:-1:exon

LOC116967958
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967958
product: zinc finger protein 239-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 39% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033014594.1
SIO_010081: LOC116967958
subclass of: SO_0000673
so part of: LOC116967958
location: complement(join(<5825920..5826371,5826705..5826846,5826934..5826984))
location: region:5825920-5826984:-1
so has part: feature:5826934-5826984:-1:exon
so has part: feature:5826705-5826846:-1:exon
so has part: feature:5825920-5826371:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5826934-5826984:-1:exon

position:5826934:-1
position: 5826934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5826705-5826846:-1:exon

position:5826705:-1
position: 5826705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5826846:-1
position: 5826846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5825920-5826371:-1:exon

position:5826371:-1
position: 5826371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116967958
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967958
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MEDHMTGHHKEKRYECDCGKSFKTANALEAHLQVHTGEKPYACSTCGKRFTQLAQLQEHQRVHSTGDWPYTCTQCGKGFTQSNSLLKHQRTHTDERPFTCIQCGKRFTQSNNLLKHQRTHTGERPYTCAQCGKSFSQSSYLLEHQRTHTGERPNTCAQCGKGFTSSSNLLKHQRTHTGERPYTCAQCGKGFTQSGHLLLHQRTHTGERPFTCIQC
SIO_010081: LOC116967958
subclass of: SO_0000673
so part of: LOC116967958
location: complement(join(<5825920..5826371,5826705..5826846,5826934..5826984))
location: region:5825920-5826984:-1
so has part: feature:5826934-5826984:-1:exon
so has part: feature:5826705-5826846:-1:exon
so has part: feature:5825920-5826371:-1:exon

XP_032870485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5826934-5826984:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5826705-5826846:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5825920-5826371:-1:exon

LOC116967967
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967967
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5831439..5835771
location: region:5831439-5835771:1
so has part: feature:5831439-5835771:1:exon
subclass of: SO_0000011

116967967
type: Gene
SIO_000068: ncbigene

position:5831439:1
position: 5831439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5835771:1
position: 5835771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5831439-5835771:1:exon

LOC116967967
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116967967
product: uncharacterized LOC116967967
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004410368.1
SIO_010081: LOC116967967
subclass of: SO_0000673
so part of: LOC116967967
location: join(5831439..5831459,5831628..5831629,5835647..5835771)
location: region:5831439-5835771:1
so has part: feature:5831439-5831459:1:exon
so has part: feature:5831628-5831629:1:exon
so has part: feature:5835647-5835771:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5831439-5831459:1:exon

position:5831459:1
position: 5831459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5831628-5831629:1:exon

position:5831628:1
position: 5831628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5831629:1
position: 5831629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5835647-5835771:1:exon

position:5835647:1
position: 5835647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967959
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967959
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5842404..5852664
location: region:5842404-5852664:1
so has part: feature:5842404-5852664:1:exon
subclass of: SO_0000010

116967959
type: Gene
SIO_000068: ncbigene

position:5842404:1
position: 5842404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5852664:1
position: 5852664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5842404-5852664:1:exon

LOC116967959
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967959
product: zinc finger protein 383-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033014595.1
SIO_010081: LOC116967959
subclass of: SO_0000673
so part of: LOC116967959
location: join(5842404..5842412,5842701..5843219,5852610..5852664)
location: region:5842404-5852664:1
so has part: feature:5842404-5842412:1:exon
so has part: feature:5842701-5843219:1:exon
so has part: feature:5852610-5852664:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5842404-5842412:1:exon

position:5842412:1
position: 5842412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5842701-5843219:1:exon

position:5842701:1
position: 5842701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5843219:1
position: 5843219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5852610-5852664:1:exon

position:5852610:1
position: 5852610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967959
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967959
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 383-like
translation: MAACVKGFTSSSSLLKHQRTHTGERPYTCAQCSKGFTHSTSLLVHQHTYTGERPYTCAQCCKGYTSSSRLLSHQRVHAGDRPVPSIVCGERFAMASQDLSLQHMHTSDQPYDCPYCGEAFDSLRELQQHRWTHAGDQLLPL
SIO_010081: LOC116967959
subclass of: SO_0000673
so part of: LOC116967959
location: join(5842404..5842412,5842701..5843117)
location: region:5842404-5843117:1
so has part: feature:5842404-5842412:1:exon
so has part: feature:5842701-5843117:1:exon

XP_032870486.1
type: Protein
SIO_000068: ncbiprotein

position:5843117:1
position: 5843117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5842404-5842412:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5842701-5843117:1:exon

LOC116967954
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116967954
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7944242..7946902
location: region:7944242-7946902:1
so has part: feature:7944242-7946902:1:exon
subclass of: SO_0000010

116967954
type: Gene
SIO_000068: ncbigene

position:7944242:1
position: 7944242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7946902:1
position: 7946902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7944242-7946902:1:exon

LOC116967954
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116967954
product: isochorismatase domain-containing protein 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_033014591.1
SIO_010081: LOC116967954
subclass of: SO_0000673
so part of: LOC116967954
location: join(7944242..7944423,7946112..7946324,7946828..7946902)
location: region:7944242-7946902:1
so has part: feature:7944242-7944423:1:exon
so has part: feature:7946112-7946324:1:exon
so has part: feature:7946828-7946902:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7944242-7944423:1:exon

position:7944423:1
position: 7944423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7946112-7946324:1:exon

position:7946112:1
position: 7946112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7946324:1
position: 7946324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7946828-7946902:1:exon

position:7946828:1
position: 7946828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116967954
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116967954
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: isochorismatase domain-containing protein 2-like
translation: MAAIRVGKLGIETSALFLCDMQEKFRQRVAFFPEIVSFADRMLQGARILDIPILVSEQYPKGLGPTVPELGTSGMRKISKTCFTMMCPDLEREIESLPRLKSVILCGIETQACIMSTTLDLLEKGFEVHVIADACSSRR
SIO_010081: LOC116967954
subclass of: SO_0000673
so part of: LOC116967954
location: join(7944292..7944423,7946112..7946324,7946828..7946902)
location: region:7944292-7946902:1
so has part: feature:7944292-7944423:1:exon
so has part: feature:7946112-7946324:1:exon
so has part: feature:7946828-7946902:1:exon

XP_032870482.1
type: Protein
SIO_000068: ncbiprotein

position:7944292:1
position: 7944292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7944292-7944423:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7946112-7946324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7946828-7946902:1:exon