Amblyraja radiata isolate CabotCenter1 chromosome 25, sAmbRad1.1.pri, whole genome shotgun sequence.
type: Entry
definition: Amblyraja radiata isolate CabotCenter1 chromosome 25, sAmbRad1.1.pri, whole genome shotgun sequence.
sequence version: NC_045980.1
sequence date: 2021-04-05
sequence: sequence
division: CON
label: NC_045980.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA610638
dblink: SAMN09948523
keyword: WGS
keyword: RefSeq
source: Amblyraja radiata (thorny skate)
organism: Amblyraja radiata
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021390.1.\nAssembly name: sAmbRad1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/02/21. The original whole-genome shotgun project has the\naccession JAAGWR000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 13-JAN-2020\nAssembly Method :: Canu v. 1.7; purge_haplotigs v. bitbucket\n 7.10.2018; scaff10x v. 4.1.0; Bionano\n Solve DLS v. 3.3; Salsa HiC v. 2.2; Arrow\n smrtanalysis Pacbio polishing & gap\n filling v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes Illumina polishing v.\n 1.3.1; purge_dups v.\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n gEVAL manual curation v. 2020-01-13; VGP\n assembly pipeline v. 1.5\nAssembly Name :: sAmbRad1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 128.24x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima\n Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Updated annotation\nAnnotation Name :: Amblyraja radiata Updated Annotation\n Release 100.20210331\nAnnotation Version :: 100.20210331\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; propagated\n RefSeq model\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 38239757
topology: linear
so has quality: SO_0000987
location: 1..38239757
location: region:1-38239757:1
RO_0002162: 386614

NC_045980
type: RefSeq
SIO_000068: refseq

PRJNA610638
type: BioProject
SIO_000068: bioproject

SAMN09948523
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38239757:1
position: 38239757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-38239757:1:source
so part of: sequence
organism: Amblyraja radiata
mol type: genomic DNA
isolate: CabotCenter1
chromosome: 25
sex: male
tissue type: testis, liver
country: USA: Gulf of Main
lat lon: 43.1336 N 68.3266 W
collection date: 2017-09-18
collected by: Jeff Kneebone

386614
type: Taxonomy
SIO_000068: taxonomy

LOC116987191
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987191
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 451596..456188
location: region:451596-456188:1
so has part: feature:451596-456188:1:exon
subclass of: SO_0000011

116987191
type: Gene
SIO_000068: ncbigene

position:451596:1
position: 451596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456188:1
position: 456188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:451596-456188:1:exon

LOC116987191
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987191
product: uncharacterized LOC116987191
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004415655.1
SIO_010081: LOC116987191
subclass of: SO_0000673
so part of: LOC116987191
location: join(451596..451712,453545..453804,456047..456188)
location: region:451596-456188:1
so has part: feature:451596-451712:1:exon
so has part: feature:453545-453804:1:exon
so has part: feature:456047-456188:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:451596-451712:1:exon

position:451712:1
position: 451712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:453545-453804:1:exon

position:453545:1
position: 453545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:453804:1
position: 453804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:456047-456188:1:exon

position:456047:1
position: 456047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987192
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987192
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 460455..465733
location: region:460455-465733:1
so has part: feature:460455-465733:1:exon
subclass of: SO_0000011

116987192
type: Gene
SIO_000068: ncbigene

position:460455:1
position: 460455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465733:1
position: 465733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460455-465733:1:exon

LOC116987192
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987192
product: uncharacterized LOC116987192
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004415656.1
SIO_010081: LOC116987192
subclass of: SO_0000673
so part of: LOC116987192
location: join(460455..460510,463495..463533,465631..465733)
location: region:460455-465733:1
so has part: feature:460455-460510:1:exon
so has part: feature:463495-463533:1:exon
so has part: feature:465631-465733:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:460455-460510:1:exon

position:460510:1
position: 460510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:463495-463533:1:exon

position:463495:1
position: 463495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463533:1
position: 463533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:465631-465733:1:exon

position:465631:1
position: 465631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987218
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987218
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(512657..514589)
location: region:512657-514589:-1
so has part: feature:512657-514589:-1:exon
subclass of: SO_0000010

116987218
type: Gene
SIO_000068: ncbigene

position:512657:-1
position: 512657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:514589:-1
position: 514589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512657-514589:-1:exon

LOC116987218
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987218
product: dehydrogenase/reductase SDR family member 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_033043080.1
SIO_010081: LOC116987218
subclass of: SO_0000673
so part of: LOC116987218
location: complement(join(512657..513483,514349..514589))
location: region:512657-514589:-1
so has part: feature:514349-514589:-1:exon
so has part: feature:512657-513483:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:514349-514589:-1:exon

position:514349:-1
position: 514349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:512657-513483:-1:exon

position:513483:-1
position: 513483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987218
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987218
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dehydrogenase/reductase SDR family member 4-like
translation: MLSGKAAVLTASTRGIGLAAARRLARHGARVLVSSRRQDHVDEAVSGLRAEGLEAWGIPCHVGRGPDREALVAEAVRLFGGVDILVSNAGVNPHAGGILDCPESAWDKLWEVNVKAAALLVGLVAPHMEKRGGGSIVLVSSVAGYRPSFPIGAYGVSKTALLGLTKALAGELAPLRIRVNCLAPGFIKTNFSSVLWEEDGLRRELEKGVAMGRLGEAEECAGVVAFLCSPDAAYITGETVGVNGGIDCRL
SIO_010081: LOC116987218
subclass of: SO_0000673
so part of: LOC116987218
location: complement(join(512934..513483,514349..514551))
location: region:512934-514551:-1
so has part: feature:514349-514551:-1:exon
so has part: feature:512934-513483:-1:exon

XP_032898971.1
type: Protein
SIO_000068: ncbiprotein

position:512934:-1
position: 512934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:514551:-1
position: 514551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:514349-514551:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:512934-513483:-1:exon

LOC116987219
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987219
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 552375..559161
location: region:552375-559161:1
so has part: feature:552375-559161:1:exon
subclass of: SO_0000010

116987219
type: Gene
SIO_000068: ncbigene

position:552375:1
position: 552375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:559161:1
position: 559161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552375-559161:1:exon

LOC116987219
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987219
product: G patch domain and ankyrin repeat-containing protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_033043081.1
SIO_010081: LOC116987219
subclass of: SO_0000673
so part of: LOC116987219
location: join(552375..553258,558540..559161)
location: region:552375-559161:1
so has part: feature:552375-553258:1:exon
so has part: feature:558540-559161:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:552375-553258:1:exon

position:553258:1
position: 553258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:558540-559161:1:exon

position:558540:1
position: 558540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987219
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987219
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: G patch domain and ankyrin repeat-containing protein 1-like
translation: MSCRQLISFTRAVEDGDAWRDGERRVPYSPLSREGGLDGEQARSFYESVLASSSQASNSSRASTSSSAVRKHKAEWRRVRAGGPSGHQVEGGQRNGHLLLKSAQNGDLKMLRRLLETGVSDINFRDSYYWTATMCAAYSGQLEAVKYLLSLGAAWVGVCDCTGRDALDLARQAGHAEIVTALEEYHTRPEEQEDRRERPEEGRRKLCQVCELEYREDSVQQHERSTLHLVSKGNAPAPTHYSIPDTNVGFRMMLREGWDRERGLGPCGKGRKFPVSTVLKRDQRGLGFERGPRPKVTHFQARDPEAVQQPRGVPGRVHRVATVSRREERRREARGREWERDLRVYMDL
SIO_010081: LOC116987219
subclass of: SO_0000673
so part of: LOC116987219
location: join(552672..553258,558540..558999)
location: region:552672-558999:1
so has part: feature:552672-553258:1:exon
so has part: feature:558540-558999:1:exon

XP_032898972.1
type: Protein
SIO_000068: ncbiprotein

position:552672:1
position: 552672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:558999:1
position: 558999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552672-553258:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:558540-558999:1:exon

LOC116987220
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987220
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(569505..580301)
location: region:569505-580301:-1
so has part: feature:569505-580301:-1:exon
subclass of: SO_0000010

116987220
type: Gene
SIO_000068: ncbigene

position:569505:-1
position: 569505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580301:-1
position: 580301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569505-580301:-1:exon

LOC116987220
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987220
product: nuclear factor 7, brain-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043082.1
SIO_010081: LOC116987220
subclass of: SO_0000673
so part of: LOC116987220
location: complement(join(569505..570297,570994..571106,571184..571206,572964..573164,578998..579093,579819..580301))
location: region:569505-580301:-1
so has part: feature:579819-580301:-1:exon
so has part: feature:578998-579093:-1:exon
so has part: feature:572964-573164:-1:exon
so has part: feature:571184-571206:-1:exon
so has part: feature:570994-571106:-1:exon
so has part: feature:569505-570297:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:579819-580301:-1:exon

position:579819:-1
position: 579819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:578998-579093:-1:exon

position:578998:-1
position: 578998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579093:-1
position: 579093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:572964-573164:-1:exon

position:572964:-1
position: 572964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573164:-1
position: 573164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:571184-571206:-1:exon

position:571184:-1
position: 571184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571206:-1
position: 571206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:570994-571106:-1:exon

position:570994:-1
position: 570994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571106:-1
position: 571106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:569505-570297:-1:exon

position:570297:-1
position: 570297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987220
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear factor 7, brain-like
translation: MESETFAEELLCAVCLDFFTDPVTLQCGHTFCRPCVTRCWERQRTGSCPVCRRPGPAKDLRGSRALRNLADRARELSRRGAGRRGEAGGQDGTATGHSPQTQPAEDAVGSAIDSLNKARSAALEYKLQQKENISKIKEQCGSLHTLITGEFAAMHQFLTEREQRLLGELREQRRTILGAMQRNLQALDNDLQSIERQLAELKGQVEASRQRRPPGAGAHTVLPLQLTLGQFSGPLQYAAWKAMLAHLWPAPTPLTLDPATAHRRLRLSPDLRSVSHCDIVRHGATPGPLRFEPYVCVLGAAGVGGGRRYWEVEVGGKSKWEVGVVGESADRKGRHHSPVPAAGFWLLWLRKGREYWALERPRCRLWPRRPPRTVGIYLDHEGGQVSFYDADNMAHLYTFTHTFSETLYPYFSPCLNDGGTNSQPLRICAPLGTHWS
SIO_010081: LOC116987220
subclass of: SO_0000673
so part of: LOC116987220
location: complement(join(569735..570297,570994..571106,571184..571206,572964..573164,578998..579093,579819..580133))
location: region:569735-580133:-1
so has part: feature:579819-580133:-1:exon
so has part: feature:578998-579093:-1:exon
so has part: feature:572964-573164:-1:exon
so has part: feature:571184-571206:-1:exon
so has part: feature:570994-571106:-1:exon
so has part: feature:569735-570297:-1:exon

XP_032898973.1
type: Protein
SIO_000068: ncbiprotein

position:569735:-1
position: 569735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580133:-1
position: 580133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:579819-580133:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:578998-579093:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:572964-573164:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571184-571206:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570994-571106:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:569735-570297:-1:exon

LOC116987221
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 594451..597996
location: region:594451-597996:1
so has part: feature:594451-597996:1:exon
subclass of: SO_0000010

116987221
type: Gene
SIO_000068: ncbigene

position:594451:1
position: 594451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:597996:1
position: 597996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:594451-597996:1:exon

LOC116987221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987221
product: E3 ubiquitin-protein ligase TRIM69-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033043084.1
SIO_010081: LOC116987221
subclass of: SO_0000673
so part of: LOC116987221
location: join(594451..594766,594857..594952,595778..596011,597487..597509,597605..597996)
location: region:594451-597996:1
so has part: feature:594451-594766:1:exon
so has part: feature:594857-594952:1:exon
so has part: feature:595778-596011:1:exon
so has part: feature:597487-597509:1:exon
so has part: feature:597605-597996:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:594451-594766:1:exon

position:594766:1
position: 594766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:594857-594952:1:exon

position:594857:1
position: 594857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:594952:1
position: 594952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:595778-596011:1:exon

position:595778:1
position: 595778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:596011:1
position: 596011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:597487-597509:1:exon

position:597487:1
position: 597487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:597509:1
position: 597509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:597605-597996:1:exon

position:597605:1
position: 597605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase TRIM69-like
translation: MEQQQKEKIYVVLEESHNLQSHITSQFAELHQIFTEKERRVLADIREEEMKIRNAMEKRLQEIQANLNSIQKELSTLQEQIDQKDNGIFLKEVVGQRRRISDDIRSLSVTDGALPIEKINHHFVSNTLWRETCAIQRGKTCSVSILLIDYTFKYHKCKEYAVIVVTSASGISFYLSTIHCLKTLTFNAFSNFTISP
SIO_010081: LOC116987221
subclass of: SO_0000673
so part of: LOC116987221
location: join(594914..594952,595778..596011,597487..597509,597605..597899)
location: region:594914-597899:1
so has part: feature:594914-594952:1:exon
so has part: feature:595778-596011:1:exon
so has part: feature:597487-597509:1:exon
so has part: feature:597605-597899:1:exon

XP_032898975.1
type: Protein
SIO_000068: ncbiprotein

position:594914:1
position: 594914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:597899:1
position: 597899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:594914-594952:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595778-596011:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:597487-597509:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:597605-597899:1:exon

slc35e4
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: slc35e4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 790583..799524
location: region:790583-799524:1
so has part: feature:790583-799524:1:exon
subclass of: SO_0000010

116987223
type: Gene
SIO_000068: ncbigene

position:790583:1
position: 790583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:799524:1
position: 799524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790583-799524:1:exon

slc35e4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: slc35e4
product: solute carrier family 35 member E4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033043086.1
SIO_010081: slc35e4
subclass of: SO_0000673
so part of: slc35e4
location: join(790583..791455,791499..792398,798851..799524)
location: region:790583-799524:1
so has part: feature:790583-791455:1:exon
so has part: feature:791499-792398:1:exon
so has part: feature:798851-799524:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790583-791455:1:exon

position:791455:1
position: 791455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:791499-792398:1:exon

position:791499:1
position: 791499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:792398:1
position: 792398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:798851-799524:1:exon

position:798851:1
position: 798851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

slc35e4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: slc35e4
product: solute carrier family 35 member E4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_033043085.1
SIO_010081: slc35e4
subclass of: SO_0000673
so part of: slc35e4
location: join(790583..792398,798851..799513)
location: region:790583-799513:1
so has part: feature:790583-792398:1:exon
so has part: feature:798851-799513:1:exon

position:799513:1
position: 799513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790583-792398:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:798851-799513:1:exon

slc35e4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: slc35e4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 35 member E4
translation: MTSTDVFPEFLPPASVRGSSESPRRRQTLHTLAAVAVLLATGTTITSLNKCIFAVYNFHYPLLLSALHMLTAIVIDYVLIRMGFVNLQIKEISGLSTAAKVKVFLLSLTFCATIAFGNMGLNCVQVSFAQVISTTTPLFTIAISKLFLGKHHHILKYTAMMPICLGASFSLIGEMQFDHKGCFYIFAATMLRGVKSIQQSILLQEEKINSVILLYLMSIPSFCILISAAFLLESDTVWESSIKSDNRLWMFILLSCLGSVLYNLASFCVTTLTSAVTLHVVGNLNMVGNLVISQVLFGSEMTALSYAGIGLTLSGVLMYQNSDFIADYLNSRSKHHEEQDHLKTD
SIO_010081: slc35e4
subclass of: SO_0000673
so part of: slc35e4
location: join(791801..792398,798851..799290)
location: region:791801-799290:1
so has part: feature:791801-792398:1:exon
so has part: feature:798851-799290:1:exon

XP_032898976.1
type: Protein
SIO_000068: ncbiprotein

position:791801:1
position: 791801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:799290:1
position: 799290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:791801-792398:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:798851-799290:1:exon

slc35e4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: slc35e4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 35 member E4
translation: MTSTDVFPEFLPPASVRGSSESPRRRQTLHTLAAVAVLLATGTTITSLNKCIFAVYNFHYPLLLSALHMLTAIVIDYVLIRMGFVNLQIKEISGLSTAAKVKVFLLSLTFCATIAFGNMGLNCVQVSFAQVISTTTPLFTIAISKLFLGKHHHILKYTAMMPICLGASFSLIGEMQFDHKGCFYIFAATMLRGVKSIQQSILLQEEKINSVILLYLMSIPSFCILISAAFLLESDTVWESSIKSDNRLWMFILLSCLGSVLYNLASFCVTTLTSAVTLHVVGNLNMVGNLVISQVLFGSEMTALSYAGIGLTLSGVLMYQNSDFIADYLNSRSKHHEEQDHLKTD
SIO_010081: slc35e4
subclass of: SO_0000673
so part of: slc35e4
location: join(791801..792398,798851..799290)
location: region:791801-799290:1
so has part: feature:791801-792398:1:exon
so has part: feature:798851-799290:1:exon

XP_032898977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:791801-792398:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:798851-799290:1:exon

LOC116987224
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987224
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 815660..867301
location: region:815660-867301:1
so has part: feature:815660-867301:1:exon
subclass of: SO_0000010

116987224
type: Gene
SIO_000068: ncbigene

position:815660:1
position: 815660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:867301:1
position: 867301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:815660-867301:1:exon

LOC116987224
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987224
product: synergin gamma-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_033043087.1
SIO_010081: LOC116987224
subclass of: SO_0000673
so part of: LOC116987224
location: join(815660..815941,831382..831451,838260..838356,846825..846985,860442..860543,866999..867301)
location: region:815660-867301:1
so has part: feature:815660-815941:1:exon
so has part: feature:831382-831451:1:exon
so has part: feature:838260-838356:1:exon
so has part: feature:846825-846985:1:exon
so has part: feature:860442-860543:1:exon
so has part: feature:866999-867301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:815660-815941:1:exon

position:815941:1
position: 815941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:831382-831451:1:exon

position:831382:1
position: 831382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:831451:1
position: 831451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:838260-838356:1:exon

position:838260:1
position: 838260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:838356:1
position: 838356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:846825-846985:1:exon

position:846825:1
position: 846825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:846985:1
position: 846985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:860442-860543:1:exon

position:860442:1
position: 860442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:860543:1
position: 860543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:866999-867301:1:exon

position:866999:1
position: 866999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987224
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987224
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synergin gamma-like
translation: MEGKVHHLQKCLDGIYKVIRSANDILCGISQPSVCSEVLQSPQGVAYISGVNEVYKVAKRVEGGMTSLNIDNQNLHNRLRDIELTWNNLQAFFSFSPTILQMLSSELTAVCSPATDSENGQIRTCGVCLFRTGNELNGKANTVLYNSCHYHASCANFWLNCVDSNLPGLIAAEERSQTSEPCSSCAELPGHQL
SIO_010081: LOC116987224
subclass of: SO_0000673
so part of: LOC116987224
location: join(831401..831451,838260..838356,846825..846985,860442..860543,866999..867169)
location: region:831401-867169:1
so has part: feature:831401-831451:1:exon
so has part: feature:838260-838356:1:exon
so has part: feature:846825-846985:1:exon
so has part: feature:860442-860543:1:exon
so has part: feature:866999-867169:1:exon

XP_032898978.1
type: Protein
SIO_000068: ncbiprotein

position:831401:1
position: 831401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:867169:1
position: 867169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:831401-831451:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:838260-838356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:846825-846985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:860442-860543:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:866999-867169:1:exon

LOC116987697
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987697
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(875803..875909)
location: region:875803-875909:-1
so has part: feature:875803-875909:-1:exon
subclass of: SO_0000623

116987697
type: Gene
SIO_000068: ncbigene

position:875803:-1
position: 875803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:875909:-1
position: 875909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:875803-875909:-1:exon

LOC116987697
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987697
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415761.1
SIO_010081: LOC116987697
subclass of: SO_0000673
so part of: LOC116987697
location: complement(875803..875909)
location: region:875803-875909:-1
so has part: feature:875803-875909:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:875803-875909:-1:exon

LOC116987698
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987698
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(878982..879088)
location: region:878982-879088:-1
so has part: feature:878982-879088:-1:exon
subclass of: SO_0000623

116987698
type: Gene
SIO_000068: ncbigene

position:878982:-1
position: 878982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:879088:-1
position: 879088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878982-879088:-1:exon

LOC116987698
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987698
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415762.1
SIO_010081: LOC116987698
subclass of: SO_0000673
so part of: LOC116987698
location: complement(878982..879088)
location: region:878982-879088:-1
so has part: feature:878982-879088:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:878982-879088:-1:exon

LOC116987699
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987699
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(881570..881676)
location: region:881570-881676:-1
so has part: feature:881570-881676:-1:exon
subclass of: SO_0000623

116987699
type: Gene
SIO_000068: ncbigene

position:881570:-1
position: 881570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:881676:-1
position: 881676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:881570-881676:-1:exon

LOC116987699
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987699
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415763.1
SIO_010081: LOC116987699
subclass of: SO_0000673
so part of: LOC116987699
location: complement(881570..881676)
location: region:881570-881676:-1
so has part: feature:881570-881676:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:881570-881676:-1:exon

LOC116987701
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987701
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(884986..885092)
location: region:884986-885092:-1
so has part: feature:884986-885092:-1:exon
subclass of: SO_0000623

116987701
type: Gene
SIO_000068: ncbigene

position:884986:-1
position: 884986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:885092:-1
position: 885092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:884986-885092:-1:exon

LOC116987701
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987701
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415764.1
SIO_010081: LOC116987701
subclass of: SO_0000673
so part of: LOC116987701
location: complement(884986..885092)
location: region:884986-885092:-1
so has part: feature:884986-885092:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:884986-885092:-1:exon

LOC116987702
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987702
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(887280..887386)
location: region:887280-887386:-1
so has part: feature:887280-887386:-1:exon
subclass of: SO_0000623

116987702
type: Gene
SIO_000068: ncbigene

position:887280:-1
position: 887280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:887386:-1
position: 887386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:887280-887386:-1:exon

LOC116987702
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987702
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415765.1
SIO_010081: LOC116987702
subclass of: SO_0000673
so part of: LOC116987702
location: complement(887280..887386)
location: region:887280-887386:-1
so has part: feature:887280-887386:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:887280-887386:-1:exon

LOC116987703
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987703
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 892739..892860
location: region:892739-892860:1
so has part: feature:892739-892860:1:exon

116987703
type: Gene
SIO_000068: ncbigene

position:892739:1
position: 892739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:892860:1
position: 892860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:892739-892860:1:exon

LOC116987703
type: Exon
subclass of: SO_0000147
RO_0002162: 386614
gene: LOC116987703
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116987703
subclass of: SO_0000673
so part of: LOC116987703
location: 892739..892860
location: region:892739-892860:1
so has part: feature:892739-892860:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:892739-892860:1:exon

LOC116987704
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987704
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 897644..897748
location: region:897644-897748:1
so has part: feature:897644-897748:1:exon
subclass of: SO_0000623

116987704
type: Gene
SIO_000068: ncbigene

position:897644:1
position: 897644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:897748:1
position: 897748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:897644-897748:1:exon

LOC116987704
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987704
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415766.1
SIO_010081: LOC116987704
subclass of: SO_0000673
so part of: LOC116987704
location: 897644..897748
location: region:897644-897748:1
so has part: feature:897644-897748:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:897644-897748:1:exon

LOC116987705
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987705
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 911821..911924
location: region:911821-911924:1
so has part: feature:911821-911924:1:exon
subclass of: SO_0000623

116987705
type: Gene
SIO_000068: ncbigene

position:911821:1
position: 911821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:911924:1
position: 911924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:911821-911924:1:exon

LOC116987705
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: snRNA
gene: LOC116987705
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004415767.1
SIO_010081: LOC116987705
subclass of: SO_0000673
so part of: LOC116987705
location: 911821..911924
location: region:911821-911924:1
so has part: feature:911821-911924:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:911821-911924:1:exon

LOC116987193
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987193
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(966567..975949)
location: region:966567-975949:-1
so has part: feature:966567-975949:-1:exon
subclass of: SO_0000011

116987193
type: Gene
SIO_000068: ncbigene

position:966567:-1
position: 966567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:975949:-1
position: 975949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966567-975949:-1:exon

LOC116987193
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987193
product: uncharacterized LOC116987193
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004415657.1
SIO_010081: LOC116987193
subclass of: SO_0000673
so part of: LOC116987193
location: complement(join(966567..966610,970462..970467,975939..975949))
location: region:966567-975949:-1
so has part: feature:975939-975949:-1:exon
so has part: feature:970462-970467:-1:exon
so has part: feature:966567-966610:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:975939-975949:-1:exon

position:975939:-1
position: 975939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:970462-970467:-1:exon

position:970462:-1
position: 970462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:970467:-1
position: 970467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:966567-966610:-1:exon

position:966610:-1
position: 966610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

susd2
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: susd2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 996481..1141090
location: region:996481-1141090:1
so has part: feature:996481-1141090:1:exon
subclass of: SO_0000010

116987225
type: Gene
SIO_000068: ncbigene

position:996481:1
position: 996481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1141090:1
position: 1141090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:996481-1141090:1:exon

susd2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: susd2
product: sushi domain containing 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033043090.1
SIO_010081: susd2
subclass of: SO_0000673
so part of: susd2
location: join(996481..996670,1011106..1011336,1033705..1033909,1037298..1037449,1047346..1047513,1049785..1049959,1060117..1060318,1067717..1067802,1081090..1081358,1082947..1083102,1090927..1091091,1106114..1106362,1110423..1110695,1115971..1116147,1122022..1122118,1139346..1141090)
location: region:996481-1141090:1
so has part: feature:996481-996670:1:exon
so has part: feature:1011106-1011336:1:exon
so has part: feature:1033705-1033909:1:exon
so has part: feature:1037298-1037449:1:exon
so has part: feature:1047346-1047513:1:exon
so has part: feature:1049785-1049959:1:exon
so has part: feature:1060117-1060318:1:exon
so has part: feature:1067717-1067802:1:exon
so has part: feature:1081090-1081358:1:exon
so has part: feature:1082947-1083102:1:exon
so has part: feature:1090927-1091091:1:exon
so has part: feature:1106114-1106362:1:exon
so has part: feature:1110423-1110695:1:exon
so has part: feature:1115971-1116147:1:exon
so has part: feature:1122022-1122118:1:exon
so has part: feature:1139346-1141090:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:996481-996670:1:exon

position:996670:1
position: 996670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1011106-1011336:1:exon

position:1011106:1
position: 1011106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1011336:1
position: 1011336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1033705-1033909:1:exon

position:1033705:1
position: 1033705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1033909:1
position: 1033909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1037298-1037449:1:exon

position:1037298:1
position: 1037298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1037449:1
position: 1037449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1047346-1047513:1:exon

position:1047346:1
position: 1047346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1047513:1
position: 1047513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1049785-1049959:1:exon

position:1049785:1
position: 1049785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1049959:1
position: 1049959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1060117-1060318:1:exon

position:1060117:1
position: 1060117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1060318:1
position: 1060318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1067717-1067802:1:exon

position:1067717:1
position: 1067717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1067802:1
position: 1067802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1081090-1081358:1:exon

position:1081090:1
position: 1081090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1081358:1
position: 1081358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1082947-1083102:1:exon

position:1082947:1
position: 1082947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1083102:1
position: 1083102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1090927-1091091:1:exon

position:1090927:1
position: 1090927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1091091:1
position: 1091091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1106114-1106362:1:exon

position:1106114:1
position: 1106114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1106362:1
position: 1106362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1110423-1110695:1:exon

position:1110423:1
position: 1110423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1110695:1
position: 1110695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1115971-1116147:1:exon

position:1115971:1
position: 1115971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1116147:1
position: 1116147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1122022-1122118:1:exon

position:1122022:1
position: 1122022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1122118:1
position: 1122118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1139346-1141090:1:exon

position:1139346:1
position: 1139346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

susd2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: susd2
product: sushi domain containing 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033043089.1
SIO_010081: susd2
subclass of: SO_0000673
so part of: susd2
location: join(996485..996740,1011106..1011336,1033705..1033909,1037298..1037449,1047346..1047513,1049785..1049959,1060117..1060318,1067717..1067802,1081090..1081358,1082947..1083102,1090927..1091091,1106114..1106362,1110423..1110695,1115971..1116147,1122022..1122118,1139346..1141090)
location: region:996485-1141090:1
so has part: feature:996485-996740:1:exon
so has part: feature:1011106-1011336:1:exon
so has part: feature:1033705-1033909:1:exon
so has part: feature:1037298-1037449:1:exon
so has part: feature:1047346-1047513:1:exon
so has part: feature:1049785-1049959:1:exon
so has part: feature:1060117-1060318:1:exon
so has part: feature:1067717-1067802:1:exon
so has part: feature:1081090-1081358:1:exon
so has part: feature:1082947-1083102:1:exon
so has part: feature:1090927-1091091:1:exon
so has part: feature:1106114-1106362:1:exon
so has part: feature:1110423-1110695:1:exon
so has part: feature:1115971-1116147:1:exon
so has part: feature:1122022-1122118:1:exon
so has part: feature:1139346-1141090:1:exon

position:996485:1
position: 996485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:996485-996740:1:exon

position:996740:1
position: 996740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1011106-1011336:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1033705-1033909:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1037298-1037449:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1047346-1047513:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1049785-1049959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1060117-1060318:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1067717-1067802:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1081090-1081358:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1082947-1083102:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1090927-1091091:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1106114-1106362:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1110423-1110695:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1115971-1116147:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1122022-1122118:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1139346-1141090:1:exon

susd2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: susd2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sushi domain-containing protein 2
translation: MKQHLSMAKGERHKTQLFYLLVIGLILCSTVQTDAQTLCAGQCGSELANCSCHASCDPLGICCPDYWRFCLRTSPQSGTLMGGKDFVIVNNTFKAEDNITCRFKNSIVTMGYVDDEKMAHCISPLLYENGRIPFELSTDDGKNYLHQGTWVAVHHGKYSPLKKAVLHNETKWQYYGTPGVTGTLTLMWNTSIIPQQLVRIELWGYQENGLPYSDSWKGVWTYLYSLVKSVRNSGIFTFTPQPAQTAYLKWEIGMLRITGQMEPEGAPNVRALWSPSHALAWHLGEDFRGNSAAWAKDKCLKWVELEKTLPDFLSEIADCPCTMEQSRADTGRFHPDYGCDIEHGSMCTYHPGAVHCVRAIQGSLKYGAGQQCCYNAKGNQILTIDSTGGSTPDRGHDWGSPPYERPPRVPGFSHGLYDVISFYYCCLWSDNCQQYTDLRPSSDCRTYRPPKVGTAFGDPHLFTFDGTNFTFNGRGEYTLVTGEGNSTSETLQIQGRTKIIKNTEGTNAHVTGFAAVAMQEGDSDLIEVRIPDHPSESSVEVLVNKEIVTFNEQNWMDLKGVFLYSPIVHHVTTMFPSGAGVEARARGTILSITILLPETFMNRTEGLFGVMNNDPNDDFTFRNGSTLPTDTSQEMLFELGASWAIENKSSLFTYDSQFLLDNYSHAPKHDLNFTPVFQVPDDPSNPLYVDMTTLCQGNEFCRFDTLATKSLQLGNATKLSYENYQMLVESLEPVISCGILEEPKNGKKRGNVYLIGSTLNFTCNEGHVFSGSSMRTCLPTGQWSGEPVYCISENVLGIVLGTLLAIFSLVLIGVILYMNEKRLKRKKAKMAQNSFQNANPGKIDM
SIO_010081: susd2
subclass of: SO_0000673
so part of: susd2
location: join(1011237..1011336,1033705..1033909,1037298..1037449,1047346..1047513,1049785..1049959,1060117..1060318,1067717..1067802,1081090..1081358,1082947..1083102,1090927..1091091,1106114..1106362,1110423..1110695,1115971..1116147,1122022..1122118,1139346..1139409)
location: region:1011237-1139409:1
so has part: feature:1011237-1011336:1:exon
so has part: feature:1033705-1033909:1:exon
so has part: feature:1037298-1037449:1:exon
so has part: feature:1047346-1047513:1:exon
so has part: feature:1049785-1049959:1:exon
so has part: feature:1060117-1060318:1:exon
so has part: feature:1067717-1067802:1:exon
so has part: feature:1081090-1081358:1:exon
so has part: feature:1082947-1083102:1:exon
so has part: feature:1090927-1091091:1:exon
so has part: feature:1106114-1106362:1:exon
so has part: feature:1110423-1110695:1:exon
so has part: feature:1115971-1116147:1:exon
so has part: feature:1122022-1122118:1:exon
so has part: feature:1139346-1139409:1:exon

XP_032898980.1
type: Protein
SIO_000068: ncbiprotein

position:1011237:1
position: 1011237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1139409:1
position: 1139409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1011237-1011336:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1033705-1033909:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1037298-1037449:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047346-1047513:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1049785-1049959:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1060117-1060318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1067717-1067802:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1081090-1081358:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1082947-1083102:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1090927-1091091:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1106114-1106362:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1110423-1110695:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1115971-1116147:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1122022-1122118:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1139346-1139409:1:exon

susd2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: susd2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sushi domain-containing protein 2
translation: MKQHLSMAKGERHKTQLFYLLVIGLILCSTVQTDAQTLCAGQCGSELANCSCHASCDPLGICCPDYWRFCLRTSPQSGTLMGGKDFVIVNNTFKAEDNITCRFKNSIVTMGYVDDEKMAHCISPLLYENGRIPFELSTDDGKNYLHQGTWVAVHHGKYSPLKKAVLHNETKWQYYGTPGVTGTLTLMWNTSIIPQQLVRIELWGYQENGLPYSDSWKGVWTYLYSLVKSVRNSGIFTFTPQPAQTAYLKWEIGMLRITGQMEPEGAPNVRALWSPSHALAWHLGEDFRGNSAAWAKDKCLKWVELEKTLPDFLSEIADCPCTMEQSRADTGRFHPDYGCDIEHGSMCTYHPGAVHCVRAIQGSLKYGAGQQCCYNAKGNQILTIDSTGGSTPDRGHDWGSPPYERPPRVPGFSHGLYDVISFYYCCLWSDNCQQYTDLRPSSDCRTYRPPKVGTAFGDPHLFTFDGTNFTFNGRGEYTLVTGEGNSTSETLQIQGRTKIIKNTEGTNAHVTGFAAVAMQEGDSDLIEVRIPDHPSESSVEVLVNKEIVTFNEQNWMDLKGVFLYSPIVHHVTTMFPSGAGVEARARGTILSITILLPETFMNRTEGLFGVMNNDPNDDFTFRNGSTLPTDTSQEMLFELGASWAIENKSSLFTYDSQFLLDNYSHAPKHDLNFTPVFQVPDDPSNPLYVDMTTLCQGNEFCRFDTLATKSLQLGNATKLSYENYQMLVESLEPVISCGILEEPKNGKKRGNVYLIGSTLNFTCNEGHVFSGSSMRTCLPTGQWSGEPVYCISENVLGIVLGTLLAIFSLVLIGVILYMNEKRLKRKKAKMAQNSFQNANPGKIDM
SIO_010081: susd2
subclass of: SO_0000673
so part of: susd2
location: join(1011237..1011336,1033705..1033909,1037298..1037449,1047346..1047513,1049785..1049959,1060117..1060318,1067717..1067802,1081090..1081358,1082947..1083102,1090927..1091091,1106114..1106362,1110423..1110695,1115971..1116147,1122022..1122118,1139346..1139409)
location: region:1011237-1139409:1
so has part: feature:1011237-1011336:1:exon
so has part: feature:1033705-1033909:1:exon
so has part: feature:1037298-1037449:1:exon
so has part: feature:1047346-1047513:1:exon
so has part: feature:1049785-1049959:1:exon
so has part: feature:1060117-1060318:1:exon
so has part: feature:1067717-1067802:1:exon
so has part: feature:1081090-1081358:1:exon
so has part: feature:1082947-1083102:1:exon
so has part: feature:1090927-1091091:1:exon
so has part: feature:1106114-1106362:1:exon
so has part: feature:1110423-1110695:1:exon
so has part: feature:1115971-1116147:1:exon
so has part: feature:1122022-1122118:1:exon
so has part: feature:1139346-1139409:1:exon

XP_032898981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1011237-1011336:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1033705-1033909:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1037298-1037449:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047346-1047513:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1049785-1049959:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1060117-1060318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1067717-1067802:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1081090-1081358:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1082947-1083102:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1090927-1091091:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1106114-1106362:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1110423-1110695:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1115971-1116147:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1122022-1122118:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1139346-1139409:1:exon

kremen1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: kremen1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1197836..1459122
location: region:1197836-1459122:1
so has part: feature:1197836-1459122:1:exon
subclass of: SO_0000010

116987226
type: Gene
SIO_000068: ncbigene

position:1197836:1
position: 1197836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1459122:1
position: 1459122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197836-1459122:1:exon

kremen1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: kremen1
product: kringle containing transmembrane protein 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_033043091.1
SIO_010081: kremen1
subclass of: SO_0000673
so part of: kremen1
location: join(1197836..1198101,1255802..1255964,1326793..1326884,1363906..1364030,1366434..1366587,1375280..1375612,1383499..1383663,1383746..1383830,1456897..1459122)
location: region:1197836-1459122:1
so has part: feature:1197836-1198101:1:exon
so has part: feature:1255802-1255964:1:exon
so has part: feature:1326793-1326884:1:exon
so has part: feature:1363906-1364030:1:exon
so has part: feature:1366434-1366587:1:exon
so has part: feature:1375280-1375612:1:exon
so has part: feature:1383499-1383663:1:exon
so has part: feature:1383746-1383830:1:exon
so has part: feature:1456897-1459122:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1197836-1198101:1:exon

position:1198101:1
position: 1198101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1255802-1255964:1:exon

position:1255802:1
position: 1255802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1255964:1
position: 1255964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1326793-1326884:1:exon

position:1326793:1
position: 1326793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1326884:1
position: 1326884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1363906-1364030:1:exon

position:1363906:1
position: 1363906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1364030:1
position: 1364030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1366434-1366587:1:exon

position:1366434:1
position: 1366434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1366587:1
position: 1366587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1375280-1375612:1:exon

position:1375280:1
position: 1375280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1375612:1
position: 1375612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1383499-1383663:1:exon

position:1383499:1
position: 1383499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1383663:1
position: 1383663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1383746-1383830:1:exon

position:1383746:1
position: 1383746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1383830:1
position: 1383830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1456897-1459122:1:exon

position:1456897:1
position: 1456897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

kremen1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: kremen1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: kremen protein 1
translation: MRSRAQALDLYMRFGCIVTLGWAELNTECYTANGADYRGCQNRTSDQGGKPCLFWSETFQHPYNTLKYPNEEGGLGNHNYCRNPDNDVRPWCYIAEHEDGVYWKYCDISTCHMPGYLGCFKDNGDPPPLSGSSETSNKLTIQTCIKFCRNKRFKLAGMESGYACFCGNDADYWRHGEAKSTECNHVCFGDHTQPCGGDGRINIFDAMIGACGGNYSMDAGIIYSPDFPDNYASGRVCYWTIQVPGASLIQFDFTLFDIRDSSDMVEFLDGSSNNVLARFDGRNRPHDSLNVSASFVILYFYSDRVNQAEGFAVLYKAIKDEPQTQPPVNKNDLNMSDVLIEKVGSGTNVARSSKILYFITASPSQPNQNMPVWTIYALAGLLTLTVIAMVSKILLHLTIKSRRIPAQNSSENCNQQSPSEPWVITYKPSTXSVFKKKLKDQHGDRSPLVGD
SIO_010081: kremen1
subclass of: SO_0000673
so part of: kremen1
location: join(1198020..1198101,1255802..1255964,1326793..1326884,1363906..1364030,1366434..1366587,1375280..1375612,1383499..1383663,1383746..1383830,1456897..1457052)
location: region:1198020-1457052:1
so has part: feature:1198020-1198101:1:exon
so has part: feature:1255802-1255964:1:exon
so has part: feature:1326793-1326884:1:exon
so has part: feature:1363906-1364030:1:exon
so has part: feature:1366434-1366587:1:exon
so has part: feature:1375280-1375612:1:exon
so has part: feature:1383499-1383663:1:exon
so has part: feature:1383746-1383830:1:exon
so has part: feature:1456897-1457052:1:exon

XP_032898982.1
type: Protein
SIO_000068: ncbiprotein

position:1198020:1
position: 1198020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1457052:1
position: 1457052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1198020-1198101:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1255802-1255964:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1326793-1326884:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1363906-1364030:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1366434-1366587:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1375280-1375612:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383499-1383663:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1383746-1383830:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1456897-1457052:1:exon

znrf3
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: znrf3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1659398..1974600)
location: region:1659398-1974600:-1
so has part: feature:1659398-1974600:-1:exon
subclass of: SO_0000010

116987227
type: Gene
SIO_000068: ncbigene

position:1659398:-1
position: 1659398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1974600:-1
position: 1974600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1659398-1974600:-1:exon

znrf3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: znrf3
product: zinc and ring finger 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_033043094.1
SIO_010081: znrf3
subclass of: SO_0000673
so part of: znrf3
location: complement(join(1659398..1659509,1678963..1680549,1685687..1685789,1690263..1690430,1728877..1729008,1733541..1733615,1815485..1815610,1974007..1974600))
location: region:1659398-1974600:-1
so has part: feature:1974007-1974600:-1:exon
so has part: feature:1815485-1815610:-1:exon
so has part: feature:1733541-1733615:-1:exon
so has part: feature:1728877-1729008:-1:exon
so has part: feature:1690263-1690430:-1:exon
so has part: feature:1685687-1685789:-1:exon
so has part: feature:1678963-1680549:-1:exon
so has part: feature:1659398-1659509:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1974007-1974600:-1:exon

position:1974007:-1
position: 1974007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1815485-1815610:-1:exon

position:1815485:-1
position: 1815485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1815610:-1
position: 1815610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1733541-1733615:-1:exon

position:1733541:-1
position: 1733541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1733615:-1
position: 1733615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1728877-1729008:-1:exon

position:1728877:-1
position: 1728877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1729008:-1
position: 1729008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1690263-1690430:-1:exon

position:1690263:-1
position: 1690263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1690430:-1
position: 1690430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1685687-1685789:-1:exon

position:1685687:-1
position: 1685687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1685789:-1
position: 1685789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1678963-1680549:-1:exon

position:1678963:-1
position: 1678963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1680549:-1
position: 1680549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1659398-1659509:-1:exon

position:1659509:-1
position: 1659509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

znrf3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: znrf3
product: zinc and ring finger 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043093.1
SIO_010081: znrf3
subclass of: SO_0000673
so part of: znrf3
location: complement(join(1659398..1659509,1678963..1680549,1685687..1685789,1690263..1690430,1695134..1695241,1728877..1729008,1733541..1733615,1815485..1815610,1974007..1974599))
location: region:1659398-1974599:-1
so has part: feature:1974007-1974599:-1:exon
so has part: feature:1815485-1815610:-1:exon
so has part: feature:1733541-1733615:-1:exon
so has part: feature:1728877-1729008:-1:exon
so has part: feature:1695134-1695241:-1:exon
so has part: feature:1690263-1690430:-1:exon
so has part: feature:1685687-1685789:-1:exon
so has part: feature:1678963-1680549:-1:exon
so has part: feature:1659398-1659509:-1:exon

position:1974599:-1
position: 1974599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1974007-1974599:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1815485-1815610:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1733541-1733615:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1728877-1729008:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1695134-1695241:-1:exon

position:1695134:-1
position: 1695134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1695241:-1
position: 1695241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1690263-1690430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1685687-1685789:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1678963-1680549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1659398-1659509:-1:exon

znrf3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: znrf3
product: zinc and ring finger 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_033043092.1
SIO_010081: znrf3
subclass of: SO_0000673
so part of: znrf3
location: complement(join(1659398..1659509,1678963..1680549,1685687..1685789,1690263..1690430,1695134..1695244,1728877..1729008,1733541..1733615,1815485..1815610,1974007..1974597))
location: region:1659398-1974597:-1
so has part: feature:1974007-1974597:-1:exon
so has part: feature:1815485-1815610:-1:exon
so has part: feature:1733541-1733615:-1:exon
so has part: feature:1728877-1729008:-1:exon
so has part: feature:1695134-1695244:-1:exon
so has part: feature:1690263-1690430:-1:exon
so has part: feature:1685687-1685789:-1:exon
so has part: feature:1678963-1680549:-1:exon
so has part: feature:1659398-1659509:-1:exon

position:1974597:-1
position: 1974597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1974007-1974597:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1815485-1815610:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1733541-1733615:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1728877-1729008:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1695134-1695244:-1:exon

position:1695244:-1
position: 1695244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1690263-1690430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1685687-1685789:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1678963-1680549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1659398-1659509:-1:exon

znrf3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: znrf3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase ZNRF3 isoform X3
translation: MMWSGSELMPVLLVVAAAALGSVRAKETAFVEVVLFESSSNGEYTTFTTDLQGRFSRAGATISAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPQLDPKPCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQGSEDPLKRPVVYVKGVDAARLMNIVNKQKVARARIQHRPPRSSMNRLALQALEKMETRKFKSKSKVSREGNCGASDTLSSSSTSDCAICLEKYVDGEELRVIPCTHRFHKRCVDPWLLQHHTCPHCRHNIIERKKESGGPVCMEAEGQGRGRQRVVLPVHYPGRVHRTSQLTTYPTRTSMDPHGNAVTVLTVEQHSEQGLFPPQAGAYVHSFPPVHMDHHCSLEHRAFPQSHAFRRPKFNGRNYTRAPCFSQYETMYQHYFIQGLSYPQAESQVGLISHKGPSQAFQAGGSMLYPTVLHIPPSSHLDGGSSSSFSCYHGHRSVYSGYLADCPGSDSSSSSSSSAQCHCSSSDSMLDCTELSNQGVYGSCSTFRSSLSSDYDPYVYRSRSPCRAGALLVEGPPGEEEEEEEEEPPKHCGPCAEGEAGPAVSPADQLSNCSMDMNYSSSSSLEYREASSSAEGRPGGSGHQAEDRSGPSEQACARCLEIHALDCKVAESGQEGRRFPLPSVACRRRAEPRTASQALYSVAGSRPCWAELGQGQACCRYLERQAGSMAEDCAVTVQYTQADETPPCSPHTSSSGGCERGQRIAIIPEDTETDLLAAAEPSEASRLCRPQDTAGQQRREPCTAPTPLHPLALPEAASHNICSRPHEPTVRSSSAGSGPSLMLEKDFGTEQNI
SIO_010081: znrf3
subclass of: SO_0000673
so part of: znrf3
location: complement(join(1659454..1659509,1678963..1680549,1685687..1685789,1690263..1690430,1728877..1729008,1733541..1733615,1815485..1815610,1974007..1974216))
location: region:1659454-1974216:-1
so has part: feature:1974007-1974216:-1:exon
so has part: feature:1815485-1815610:-1:exon
so has part: feature:1733541-1733615:-1:exon
so has part: feature:1728877-1729008:-1:exon
so has part: feature:1690263-1690430:-1:exon
so has part: feature:1685687-1685789:-1:exon
so has part: feature:1678963-1680549:-1:exon
so has part: feature:1659454-1659509:-1:exon

XP_032898985.1
type: Protein
SIO_000068: ncbiprotein

position:1659454:-1
position: 1659454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1974216:-1
position: 1974216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1974007-1974216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1815485-1815610:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1733541-1733615:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1728877-1729008:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1690263-1690430:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1685687-1685789:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1678963-1680549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1659454-1659509:-1:exon

znrf3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: znrf3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase ZNRF3 isoform X2
translation: MMWSGSELMPVLLVVAAAALGSVRAKETAFVEVVLFESSSNGEYTTFTTDLQGRFSRAGATISAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPQLDPKPCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQGSEDPLKRPVVYVKGVDAARLMNIVNKQKVARARIQHRPPRPTEYFDMGIFLAFFVVVSLVCLVLLIKIKLKQRRSQSSMNRLALQALEKMETRKFKSKSKVSREGNCGASDTLSSSSTSDCAICLEKYVDGEELRVIPCTHRFHKRCVDPWLLQHHTCPHCRHNIIERKKESGGPVCMEAEGQGRGRQRVVLPVHYPGRVHRTSQLTTYPTRTSMDPHGNAVTVLTVEQHSEQGLFPPQAGAYVHSFPPVHMDHHCSLEHRAFPQSHAFRRPKFNGRNYTRAPCFSQYETMYQHYFIQGLSYPQAESQVGLISHKGPSQAFQAGGSMLYPTVLHIPPSSHLDGGSSSSFSCYHGHRSVYSGYLADCPGSDSSSSSSSSAQCHCSSSDSMLDCTELSNQGVYGSCSTFRSSLSSDYDPYVYRSRSPCRAGALLVEGPPGEEEEEEEEEPPKHCGPCAEGEAGPAVSPADQLSNCSMDMNYSSSSSLEYREASSSAEGRPGGSGHQAEDRSGPSEQACARCLEIHALDCKVAESGQEGRRFPLPSVACRRRAEPRTASQALYSVAGSRPCWAELGQGQACCRYLERQAGSMAEDCAVTVQYTQADETPPCSPHTSSSGGCERGQRIAIIPEDTETDLLAAAEPSEASRLCRPQDTAGQQRREPCTAPTPLHPLALPEAASHNICSRPHEPTVRSSSAGSGPSLMLEKDFGTEQNI
SIO_010081: znrf3
subclass of: SO_0000673
so part of: znrf3
location: complement(join(1659454..1659509,1678963..1680549,1685687..1685789,1690263..1690430,1695134..1695241,1728877..1729008,1733541..1733615,1815485..1815610,1974007..1974216))
location: region:1659454-1974216:-1
so has part: feature:1974007-1974216:-1:exon
so has part: feature:1815485-1815610:-1:exon
so has part: feature:1733541-1733615:-1:exon
so has part: feature:1728877-1729008:-1:exon
so has part: feature:1695134-1695241:-1:exon
so has part: feature:1690263-1690430:-1:exon
so has part: feature:1685687-1685789:-1:exon
so has part: feature:1678963-1680549:-1:exon
so has part: feature:1659454-1659509:-1:exon

XP_032898984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1974007-1974216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1815485-1815610:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1733541-1733615:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1728877-1729008:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1695134-1695241:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1690263-1690430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1685687-1685789:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1678963-1680549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1659454-1659509:-1:exon

znrf3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: znrf3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase ZNRF3 isoform X1
translation: MMWSGSELMPVLLVVAAAALGSVRAKETAFVEVVLFESSSNGEYTTFTTDLQGRFSRAGATISAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPQLDPKPCLTVLGKAKRAVQRGATAVIFDVSENPDAIDQLNQGSEDPLKRPVVYVKGVDAARLMNIVNKQKVARARIQHRPPRQPTEYFDMGIFLAFFVVVSLVCLVLLIKIKLKQRRSQSSMNRLALQALEKMETRKFKSKSKVSREGNCGASDTLSSSSTSDCAICLEKYVDGEELRVIPCTHRFHKRCVDPWLLQHHTCPHCRHNIIERKKESGGPVCMEAEGQGRGRQRVVLPVHYPGRVHRTSQLTTYPTRTSMDPHGNAVTVLTVEQHSEQGLFPPQAGAYVHSFPPVHMDHHCSLEHRAFPQSHAFRRPKFNGRNYTRAPCFSQYETMYQHYFIQGLSYPQAESQVGLISHKGPSQAFQAGGSMLYPTVLHIPPSSHLDGGSSSSFSCYHGHRSVYSGYLADCPGSDSSSSSSSSAQCHCSSSDSMLDCTELSNQGVYGSCSTFRSSLSSDYDPYVYRSRSPCRAGALLVEGPPGEEEEEEEEEPPKHCGPCAEGEAGPAVSPADQLSNCSMDMNYSSSSSLEYREASSSAEGRPGGSGHQAEDRSGPSEQACARCLEIHALDCKVAESGQEGRRFPLPSVACRRRAEPRTASQALYSVAGSRPCWAELGQGQACCRYLERQAGSMAEDCAVTVQYTQADETPPCSPHTSSSGGCERGQRIAIIPEDTETDLLAAAEPSEASRLCRPQDTAGQQRREPCTAPTPLHPLALPEAASHNICSRPHEPTVRSSSAGSGPSLMLEKDFGTEQNI
SIO_010081: znrf3
subclass of: SO_0000673
so part of: znrf3
location: complement(join(1659454..1659509,1678963..1680549,1685687..1685789,1690263..1690430,1695134..1695244,1728877..1729008,1733541..1733615,1815485..1815610,1974007..1974216))
location: region:1659454-1974216:-1
so has part: feature:1974007-1974216:-1:exon
so has part: feature:1815485-1815610:-1:exon
so has part: feature:1733541-1733615:-1:exon
so has part: feature:1728877-1729008:-1:exon
so has part: feature:1695134-1695244:-1:exon
so has part: feature:1690263-1690430:-1:exon
so has part: feature:1685687-1685789:-1:exon
so has part: feature:1678963-1680549:-1:exon
so has part: feature:1659454-1659509:-1:exon

XP_032898983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1974007-1974216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1815485-1815610:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1733541-1733615:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1728877-1729008:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1695134-1695244:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1690263-1690430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1685687-1685789:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1678963-1680549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1659454-1659509:-1:exon

xbp1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: xbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2354207..2382825
location: region:2354207-2382825:1
so has part: feature:2354207-2382825:1:exon
subclass of: SO_0000010

116987228
type: Gene
SIO_000068: ncbigene

position:2354207:1
position: 2354207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2382825:1
position: 2382825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2354207-2382825:1:exon

xbp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: xbp1
product: X-box binding protein 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033043095.1
SIO_010081: xbp1
subclass of: SO_0000673
so part of: xbp1
location: join(2354207..2354220,2374223..2374433,2375072..2375168,2376212..2376331,2379524..2379687,2381713..2382825)
location: region:2354207-2382825:1
so has part: feature:2354207-2354220:1:exon
so has part: feature:2374223-2374433:1:exon
so has part: feature:2375072-2375168:1:exon
so has part: feature:2376212-2376331:1:exon
so has part: feature:2379524-2379687:1:exon
so has part: feature:2381713-2382825:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2354207-2354220:1:exon

position:2354220:1
position: 2354220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2374223-2374433:1:exon

position:2374223:1
position: 2374223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2374433:1
position: 2374433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2375072-2375168:1:exon

position:2375072:1
position: 2375072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2375168:1
position: 2375168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2376212-2376331:1:exon

position:2376212:1
position: 2376212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2376331:1
position: 2376331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2379524-2379687:1:exon

position:2379524:1
position: 2379524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2379687:1
position: 2379687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2381713-2382825:1:exon

position:2381713:1
position: 2381713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

xbp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: xbp1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: X-box-binding protein 1
translation: MVAVSSKLLLIPGEQPTGLDVGRHMSLVYPAQGGPLLAPSPAISHTQRKRQRLTHLSPEEKAMRRKLKNRVAAQTARDRKKARMSELEDQVSEMESENQKLQIENRLLHEKTHSLMTENQELRQRLGMEALDTEKEKVLLQARVDEMSLAAGSAERSTQTTCASAAGAGPAAGQADNFHMDTDSIDSSDSESDLFLGILDYFDPETLLRFTEGCRPFELGECAYGENVGSLPASTSVSLGAPSTKLEAINEMIHSDHFYHKPLAEASLVQSSETGVKIEQASFGGTNEVIAEEAPLPMELKEEPLEDKLIAELRLANNLSSRQCQEKPLCPLDYHDSDYEGSSSPLSDMSSPLTLGNSWEDAFTSELFPQLIAV
SIO_010081: xbp1
subclass of: SO_0000673
so part of: xbp1
location: join(2374240..2374433,2375072..2375168,2376212..2376331,2379524..2379687,2381713..2382264)
location: region:2374240-2382264:1
so has part: feature:2374240-2374433:1:exon
so has part: feature:2375072-2375168:1:exon
so has part: feature:2376212-2376331:1:exon
so has part: feature:2379524-2379687:1:exon
so has part: feature:2381713-2382264:1:exon

XP_032898986.1
type: Protein
SIO_000068: ncbiprotein

position:2374240:1
position: 2374240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2382264:1
position: 2382264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2374240-2374433:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2375072-2375168:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2376212-2376331:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2379524-2379687:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2381713-2382264:1:exon

ccdc60
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: ccdc60
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2466551..2595918)
location: region:2466551-2595918:-1
so has part: feature:2466551-2595918:-1:exon
subclass of: SO_0000010

116987229
type: Gene
SIO_000068: ncbigene

position:2466551:-1
position: 2466551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2595918:-1
position: 2595918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2466551-2595918:-1:exon

ccdc60
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: ccdc60
product: coiled-coil domain containing 60, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033043098.1
SIO_010081: ccdc60
subclass of: SO_0000673
so part of: ccdc60
location: complement(join(2466551..2467079,2468454..2468643,2471742..2471876,2483127..2483225,2486526..2486613,2515054..2515330,2519679..2519769,2526299..2526403,2540997..2541149,2550574..2550759,2578022..2578101,2587286..2587375,2595238..2595918))
location: region:2466551-2595918:-1
so has part: feature:2595238-2595918:-1:exon
so has part: feature:2587286-2587375:-1:exon
so has part: feature:2578022-2578101:-1:exon
so has part: feature:2550574-2550759:-1:exon
so has part: feature:2540997-2541149:-1:exon
so has part: feature:2526299-2526403:-1:exon
so has part: feature:2519679-2519769:-1:exon
so has part: feature:2515054-2515330:-1:exon
so has part: feature:2486526-2486613:-1:exon
so has part: feature:2483127-2483225:-1:exon
so has part: feature:2471742-2471876:-1:exon
so has part: feature:2468454-2468643:-1:exon
so has part: feature:2466551-2467079:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2595238-2595918:-1:exon

position:2595238:-1
position: 2595238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2587286-2587375:-1:exon

position:2587286:-1
position: 2587286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2587375:-1
position: 2587375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2578022-2578101:-1:exon

position:2578022:-1
position: 2578022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2578101:-1
position: 2578101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2550574-2550759:-1:exon

position:2550574:-1
position: 2550574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2550759:-1
position: 2550759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2540997-2541149:-1:exon

position:2540997:-1
position: 2540997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2541149:-1
position: 2541149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2526299-2526403:-1:exon

position:2526299:-1
position: 2526299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2526403:-1
position: 2526403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2519679-2519769:-1:exon

position:2519679:-1
position: 2519679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2519769:-1
position: 2519769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2515054-2515330:-1:exon

position:2515054:-1
position: 2515054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2515330:-1
position: 2515330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2486526-2486613:-1:exon

position:2486526:-1
position: 2486526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2486613:-1
position: 2486613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2483127-2483225:-1:exon

position:2483127:-1
position: 2483127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2483225:-1
position: 2483225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2471742-2471876:-1:exon

position:2471742:-1
position: 2471742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2471876:-1
position: 2471876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2468454-2468643:-1:exon

position:2468454:-1
position: 2468454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2468643:-1
position: 2468643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2466551-2467079:-1:exon

position:2467079:-1
position: 2467079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ccdc60
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: ccdc60
product: coiled-coil domain containing 60, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033043096.1
SIO_010081: ccdc60
subclass of: SO_0000673
so part of: ccdc60
location: complement(join(2466551..2467079,2468454..2468643,2471742..2471876,2477120..2477260,2483127..2483225,2486526..2486613,2515054..2515330,2519679..2519769,2526299..2526403,2540997..2541149,2550574..2550759,2578022..2578101,2587286..2587375,2595238..2595918))
location: region:2466551-2595918:-1
so has part: feature:2595238-2595918:-1:exon
so has part: feature:2587286-2587375:-1:exon
so has part: feature:2578022-2578101:-1:exon
so has part: feature:2550574-2550759:-1:exon
so has part: feature:2540997-2541149:-1:exon
so has part: feature:2526299-2526403:-1:exon
so has part: feature:2519679-2519769:-1:exon
so has part: feature:2515054-2515330:-1:exon
so has part: feature:2486526-2486613:-1:exon
so has part: feature:2483127-2483225:-1:exon
so has part: feature:2477120-2477260:-1:exon
so has part: feature:2471742-2471876:-1:exon
so has part: feature:2468454-2468643:-1:exon
so has part: feature:2466551-2467079:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2595238-2595918:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2587286-2587375:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2578022-2578101:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2550574-2550759:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2540997-2541149:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526299-2526403:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2519679-2519769:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2515054-2515330:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2486526-2486613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2483127-2483225:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2477120-2477260:-1:exon

position:2477120:-1
position: 2477120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2477260:-1
position: 2477260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2471742-2471876:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2468454-2468643:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2466551-2467079:-1:exon

ccdc60
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: ccdc60
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 60 isoform X2
translation: MPAGSRVLEPRSFVAIKPLPFAAAAQGLKVRARSLAVYIPSEPSREQIFRENYRRRQRQLNQQGYRSLSWQPYQPIGHPLQLAPRKLVLHSLGQLHQAVIDEATAASEDRPDEAKDSRSPNVPKENKVPTANRMHLKYKDKDLKTISKDLSHTRQLVNTAKQGQGFFKRLQREEQENKTAQLMEQRKLMEKRKTAWQPPTLSSDEESEEEQNEAMRFFKTEPVMSTHLKGIQRHSQNVSSKRKNVSARPYTPLYCSLVSSRFTDRDVEPLHRQLCALNWLLEAVAAEPPNTMGPVSTCWSARDPGGMKNASRKINKDKSIEAKWEQFISQPKLKKSTMRVLQKTPLRFRRTSFSAASPANVSSSMLTPVFDSASSEIASSGGRGTGTPAPVLESVCEIPDDDSTISSIHTQNKQDEEEEEAIPDYLQKLIDSVHESINKELHGEDTHPRNNEESSTAVVSTGKVNPWASYSTEPHTDINKLQQRPKRKRWDTSRRRFRALDNITSFYTYNEDMQRSLQESGENKTEGNAESWFCSLLPRVPEEIRGNQKISQALRKLEKFGERQSHRIRPQQFLKTLHGLRNWELCSPDISAAIEFMRDKVIQMPAEDYDNWLQLKLNLPKRAQSAPPMR
SIO_010081: ccdc60
subclass of: SO_0000673
so part of: ccdc60
location: complement(join(2466972..2467079,2468454..2468643,2471742..2471876,2483127..2483225,2486526..2486613,2515054..2515330,2519679..2519769,2526299..2526403,2540997..2541149,2550574..2550759,2578022..2578101,2587286..2587375,2595238..2595528))
location: region:2466972-2595528:-1
so has part: feature:2595238-2595528:-1:exon
so has part: feature:2587286-2587375:-1:exon
so has part: feature:2578022-2578101:-1:exon
so has part: feature:2550574-2550759:-1:exon
so has part: feature:2540997-2541149:-1:exon
so has part: feature:2526299-2526403:-1:exon
so has part: feature:2519679-2519769:-1:exon
so has part: feature:2515054-2515330:-1:exon
so has part: feature:2486526-2486613:-1:exon
so has part: feature:2483127-2483225:-1:exon
so has part: feature:2471742-2471876:-1:exon
so has part: feature:2468454-2468643:-1:exon
so has part: feature:2466972-2467079:-1:exon

XP_032898989.1
type: Protein
SIO_000068: ncbiprotein

position:2466972:-1
position: 2466972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2595528:-1
position: 2595528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2595238-2595528:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2587286-2587375:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2578022-2578101:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2550574-2550759:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2540997-2541149:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526299-2526403:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2519679-2519769:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2515054-2515330:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2486526-2486613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2483127-2483225:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2471742-2471876:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2468454-2468643:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2466972-2467079:-1:exon

ccdc60
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: ccdc60
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 60 isoform X1
translation: MPAGSRVLEPRSFVAIKPLPFAAAAQGLKVRARSLAVYIPSEPSREQIFRENYRRRQRQLNQQGYRSLSWQPYQPIGHPLQLAPRKLVLHSLGQLHQAVIDEATAASEDRPDEAKDSRSPNVPKENKVPTANRMHLKYKDKDLKTISKDLSHTRQLVNTAKQGQGFFKRLQREEQENKTAQLMEQRKLMEKRKTAWQPPTLSSDEESEEEQNEAMRFFKTEPVMSTHLKGIQRHSQNVSSKRKNVSARPYTPLYCSLVSSRFTDRDVEPLHRQLCALNWLLEAVAAEPPNTMGPVSTCWSARDPGGMKNASRKINKDKSIEAKWEQFISQPKLKKSTMRVLQKTPLRFRRTSFSAASPANVSSSMLTPVFDSASSEIASSGGRGTGTPAPVLESVCEIPDDDSTISSIHTQNKQDEEEEEAIPDYLQKLIDSVHESINKELHGEDTHPRNNEESSTAVVSTGKVNPWASYSTEPHTDINKLQQRPKSTPSGHVSGTNLFSASKSSLSLEMQSKFVEITEEAALCLHDNLAALEKKRWDTSRRRFRALDNITSFYTYNEDMQRSLQESGENKTEGNAESWFCSLLPRVPEEIRGNQKISQALRKLEKFGERQSHRIRPQQFLKTLHGLRNWELCSPDISAAIEFMRDKVIQMPAEDYDNWLQLKLNLPKRAQSAPPMR
SIO_010081: ccdc60
subclass of: SO_0000673
so part of: ccdc60
location: complement(join(2466972..2467079,2468454..2468643,2471742..2471876,2477120..2477260,2483127..2483225,2486526..2486613,2515054..2515330,2519679..2519769,2526299..2526403,2540997..2541149,2550574..2550759,2578022..2578101,2587286..2587375,2595238..2595528))
location: region:2466972-2595528:-1
so has part: feature:2595238-2595528:-1:exon
so has part: feature:2587286-2587375:-1:exon
so has part: feature:2578022-2578101:-1:exon
so has part: feature:2550574-2550759:-1:exon
so has part: feature:2540997-2541149:-1:exon
so has part: feature:2526299-2526403:-1:exon
so has part: feature:2519679-2519769:-1:exon
so has part: feature:2515054-2515330:-1:exon
so has part: feature:2486526-2486613:-1:exon
so has part: feature:2483127-2483225:-1:exon
so has part: feature:2477120-2477260:-1:exon
so has part: feature:2471742-2471876:-1:exon
so has part: feature:2468454-2468643:-1:exon
so has part: feature:2466972-2467079:-1:exon

XP_032898987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2595238-2595528:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2587286-2587375:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2578022-2578101:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2550574-2550759:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2540997-2541149:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526299-2526403:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2519679-2519769:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2515054-2515330:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2486526-2486613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2483127-2483225:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2477120-2477260:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2471742-2471876:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2468454-2468643:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2466972-2467079:-1:exon

LOC116987230
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2626465..2643668
location: region:2626465-2643668:1
so has part: feature:2626465-2643668:1:exon
subclass of: SO_0000010

116987230
type: Gene
SIO_000068: ncbigene

position:2626465:1
position: 2626465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2643668:1
position: 2643668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2626465-2643668:1:exon

LOC116987230
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987230
product: heat shock protein beta-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043099.1
SIO_010081: LOC116987230
subclass of: SO_0000673
so part of: LOC116987230
location: join(2626465..2627028,2639191..2639254,2642929..2643108,2643248..2643668)
location: region:2626465-2643668:1
so has part: feature:2626465-2627028:1:exon
so has part: feature:2639191-2639254:1:exon
so has part: feature:2642929-2643108:1:exon
so has part: feature:2643248-2643668:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2626465-2627028:1:exon

position:2627028:1
position: 2627028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2639191-2639254:1:exon

position:2639191:1
position: 2639191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2639254:1
position: 2639254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2642929-2643108:1:exon

position:2642929:1
position: 2642929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2643108:1
position: 2643108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2643248-2643668:1:exon

position:2643248:1
position: 2643248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heat shock protein beta-1-like
translation: MSLSHFFPRSYWDPLRRGYSPSCLLDLDFGLPPYPEQPLRDWMEWMENRFSTSRAGTLCSGPADNATASHSTSSISQPLARGTSVPQRKLSCWKISLDVKHFTPDELQVKTQEGYLEISGSHNEREDQHGFISRCFTRKYRLPSAVAARSVTSTLTSNGILVVEAPLRSSLEVVIPVQTEKVSGDDEKVKKEEEPVVGKEVWRMRRCSTLKWFLKIKKTRKKHIHQQVK
SIO_010081: LOC116987230
subclass of: SO_0000673
so part of: LOC116987230
location: join(2626671..2627028,2639191..2639254,2642929..2643108,2643248..2643335)
location: region:2626671-2643335:1
so has part: feature:2626671-2627028:1:exon
so has part: feature:2639191-2639254:1:exon
so has part: feature:2642929-2643108:1:exon
so has part: feature:2643248-2643335:1:exon

XP_032898990.1
type: Protein
SIO_000068: ncbiprotein

position:2626671:1
position: 2626671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2643335:1
position: 2643335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2626671-2627028:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2639191-2639254:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2642929-2643108:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2643248-2643335:1:exon

hspb8
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: hspb8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2679485..2686034)
location: region:2679485-2686034:-1
so has part: feature:2679485-2686034:-1:exon
subclass of: SO_0000010

116987232
type: Gene
SIO_000068: ncbigene

position:2679485:-1
position: 2679485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2686034:-1
position: 2686034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2679485-2686034:-1:exon

hspb8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: hspb8
product: heat shock protein family B (small) member 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_033043102.1
SIO_010081: hspb8
subclass of: SO_0000673
so part of: hspb8
location: complement(join(2679485..2679982,2684573..2684636,2685522..2686034))
location: region:2679485-2686034:-1
so has part: feature:2685522-2686034:-1:exon
so has part: feature:2684573-2684636:-1:exon
so has part: feature:2679485-2679982:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2685522-2686034:-1:exon

position:2685522:-1
position: 2685522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2684573-2684636:-1:exon

position:2684573:-1
position: 2684573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2684636:-1
position: 2684636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2679485-2679982:-1:exon

position:2679982:-1
position: 2679982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

hspb8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: hspb8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heat shock protein beta-8
translation: MAEGQVPFSCQIPGRQRSTRDPFRDPRFLEEDFGMSPFPDHFTADWPDWARPRLTSTWPGPLRSSFNGAAARDAAAAGSPSPPHYTARYTGYPETRSPLSPGEPWKMCVNVQSFAPEELTIKTKDSFVEISGKHEEKQEEGGIVSKNFTKKIQLPTEVNPATVFASLSPEGVLIIEAPPVRPPCYFYGDDSMSIDAEENGLRGQEQTVS
SIO_010081: hspb8
subclass of: SO_0000673
so part of: hspb8
location: complement(join(2679811..2679982,2684573..2684636,2685522..2685915))
location: region:2679811-2685915:-1
so has part: feature:2685522-2685915:-1:exon
so has part: feature:2684573-2684636:-1:exon
so has part: feature:2679811-2679982:-1:exon

XP_032898993.1
type: Protein
SIO_000068: ncbiprotein

position:2679811:-1
position: 2679811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2685915:-1
position: 2685915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2685522-2685915:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2684573-2684636:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2679811-2679982:-1:exon

srrm4
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: srrm4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2702160..3135392)
location: region:2702160-3135392:-1
so has part: feature:2702160-3135392:-1:exon
subclass of: SO_0000010

116987231
type: Gene
SIO_000068: ncbigene

position:2702160:-1
position: 2702160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3135392:-1
position: 3135392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2702160-3135392:-1:exon

srrm4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: srrm4
product: serine/arginine repetitive matrix 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043101.1
SIO_010081: srrm4
subclass of: SO_0000673
so part of: srrm4
location: complement(join(2702160..2705577,2708064..2708204,2710966..2711073,2720231..2720461,2723525..2723883,2748262..2748439,2785749..2785799,2785896..2785931,2800122..2800193,2807249..2807326,2832632..2832760,3134713..3135392))
location: region:2702160-3135392:-1
so has part: feature:3134713-3135392:-1:exon
so has part: feature:2832632-2832760:-1:exon
so has part: feature:2807249-2807326:-1:exon
so has part: feature:2800122-2800193:-1:exon
so has part: feature:2785896-2785931:-1:exon
so has part: feature:2785749-2785799:-1:exon
so has part: feature:2748262-2748439:-1:exon
so has part: feature:2723525-2723883:-1:exon
so has part: feature:2720231-2720461:-1:exon
so has part: feature:2710966-2711073:-1:exon
so has part: feature:2708064-2708204:-1:exon
so has part: feature:2702160-2705577:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3134713-3135392:-1:exon

position:3134713:-1
position: 3134713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2832632-2832760:-1:exon

position:2832632:-1
position: 2832632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2832760:-1
position: 2832760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2807249-2807326:-1:exon

position:2807249:-1
position: 2807249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2807326:-1
position: 2807326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2800122-2800193:-1:exon

position:2800122:-1
position: 2800122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2800193:-1
position: 2800193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2785896-2785931:-1:exon

position:2785896:-1
position: 2785896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2785931:-1
position: 2785931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2785749-2785799:-1:exon

position:2785749:-1
position: 2785749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2785799:-1
position: 2785799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2748262-2748439:-1:exon

position:2748262:-1
position: 2748262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2748439:-1
position: 2748439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2723525-2723883:-1:exon

position:2723525:-1
position: 2723525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2723883:-1
position: 2723883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2720231-2720461:-1:exon

position:2720231:-1
position: 2720231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2720461:-1
position: 2720461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2710966-2711073:-1:exon

position:2710966:-1
position: 2710966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2711073:-1
position: 2711073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2708064-2708204:-1:exon

position:2708064:-1
position: 2708064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2708204:-1
position: 2708204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2702160-2705577:-1:exon

position:2705577:-1
position: 2705577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

srrm4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: srrm4
product: serine/arginine repetitive matrix 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033043100.1
SIO_010081: srrm4
subclass of: SO_0000673
so part of: srrm4
location: complement(join(2702160..2705577,2708064..2708204,2710966..2711073,2720231..2720461,2723525..2723883,2748262..2748439,2756879..2756971,2785749..2785799,2785896..2785931,2800122..2800193,2807249..2807326,2832632..2832760,3134713..3135389))
location: region:2702160-3135389:-1
so has part: feature:3134713-3135389:-1:exon
so has part: feature:2832632-2832760:-1:exon
so has part: feature:2807249-2807326:-1:exon
so has part: feature:2800122-2800193:-1:exon
so has part: feature:2785896-2785931:-1:exon
so has part: feature:2785749-2785799:-1:exon
so has part: feature:2756879-2756971:-1:exon
so has part: feature:2748262-2748439:-1:exon
so has part: feature:2723525-2723883:-1:exon
so has part: feature:2720231-2720461:-1:exon
so has part: feature:2710966-2711073:-1:exon
so has part: feature:2708064-2708204:-1:exon
so has part: feature:2702160-2705577:-1:exon

position:3135389:-1
position: 3135389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3134713-3135389:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2832632-2832760:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2807249-2807326:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2800122-2800193:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2785896-2785931:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2785749-2785799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2756879-2756971:-1:exon

position:2756879:-1
position: 2756879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2756971:-1
position: 2756971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2748262-2748439:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2723525-2723883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2720231-2720461:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2710966-2711073:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2708064-2708204:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2702160-2705577:-1:exon

srrm4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: srrm4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/arginine repetitive matrix protein 4 isoform X2
translation: MISVQQGEKQLFEKFWRGTFKAVATPRPESIIVASIRARRSLNNGASNYQAHRSNERSTSAMLQAASANGCSKVKDSKQQNHHRQHRSCSGHSPPPASKRKKKKKKSEHKRRRSPSCSPAPVRKKKKKSSKKHKRNRSAAASAKKRRHSSKSPKRKRKDEKRHRKRNEGRSKAARCPRGRSRSSNHGDYSKSNPGQRAPGTSHSHSGKSPCKSPQNKNSRPTSKIIYKSESSGRKLVKEEYSKPDNVPSQNGTYHDYDSGNDTASSPSTKPPSSRSQTEGEKGQILNHHAELGSQTPSPGKLKLGDAEPGSDSGNSVTSCSSPCKVVASSPTTSPAYQLDKGARRELSASHGWPTTSERKTSPSPSPARNSPRRHRSRSDSQSSRERERSSHSYSCSSRSRSSEYKSSMKYSRSRSHSSGKRSSSRSLSYSPRSRRSPGSRSSRSRRSPSYSRYSPERDHDRGRDGKKYGSRERESRRRRSRSYSPMRKRRRDSPSHLEPRRITSARKRPIPYYRPSPSSSSSVSSYSSRYSSRSHSRSWSRSRTTSRSRSYSSRSRSRSRSRNRSRSRSRSSDRGSSGRSRSKSYDSDGSYESLRR
SIO_010081: srrm4
subclass of: SO_0000673
so part of: srrm4
location: complement(join(2705298..2705577,2708064..2708204,2710966..2711073,2720231..2720461,2723525..2723883,2748262..2748439,2785749..2785799,2785896..2785931,2800122..2800193,2807249..2807326,2832632..2832760,3134713..3134843))
location: region:2705298-3134843:-1
so has part: feature:3134713-3134843:-1:exon
so has part: feature:2832632-2832760:-1:exon
so has part: feature:2807249-2807326:-1:exon
so has part: feature:2800122-2800193:-1:exon
so has part: feature:2785896-2785931:-1:exon
so has part: feature:2785749-2785799:-1:exon
so has part: feature:2748262-2748439:-1:exon
so has part: feature:2723525-2723883:-1:exon
so has part: feature:2720231-2720461:-1:exon
so has part: feature:2710966-2711073:-1:exon
so has part: feature:2708064-2708204:-1:exon
so has part: feature:2705298-2705577:-1:exon

XP_032898992.1
type: Protein
SIO_000068: ncbiprotein

position:2705298:-1
position: 2705298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3134843:-1
position: 3134843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3134713-3134843:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2832632-2832760:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2807249-2807326:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2800122-2800193:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2785896-2785931:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2785749-2785799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2748262-2748439:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2723525-2723883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2720231-2720461:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2710966-2711073:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2708064-2708204:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2705298-2705577:-1:exon

srrm4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: srrm4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/arginine repetitive matrix protein 4 isoform X1
translation: MISVQQGEKQLFEKFWRGTFKAVATPRPESIIVASIRARRSLNNGASNYQAHRSNERSTSAMLQAASANGCSKVKDSKQQNHHRQHRSCSGHSPPPASKRKKKKKKSEHKRRRSPSCSPAPVRKKKKKSSKKHKRNRSAAASAKKRRHSSKSPKRKRKDEKRHRKRSRAVSTSHKGHRCRRPTSHVSAARTSSCSSSNEGRSKAARCPRGRSRSSNHGDYSKSNPGQRAPGTSHSHSGKSPCKSPQNKNSRPTSKIIYKSESSGRKLVKEEYSKPDNVPSQNGTYHDYDSGNDTASSPSTKPPSSRSQTEGEKGQILNHHAELGSQTPSPGKLKLGDAEPGSDSGNSVTSCSSPCKVVASSPTTSPAYQLDKGARRELSASHGWPTTSERKTSPSPSPARNSPRRHRSRSDSQSSRERERSSHSYSCSSRSRSSEYKSSMKYSRSRSHSSGKRSSSRSLSYSPRSRRSPGSRSSRSRRSPSYSRYSPERDHDRGRDGKKYGSRERESRRRRSRSYSPMRKRRRDSPSHLEPRRITSARKRPIPYYRPSPSSSSSVSSYSSRYSSRSHSRSWSRSRTTSRSRSYSSRSRSRSRSRNRSRSRSRSSDRGSSGRSRSKSYDSDGSYESLRR
SIO_010081: srrm4
subclass of: SO_0000673
so part of: srrm4
location: complement(join(2705298..2705577,2708064..2708204,2710966..2711073,2720231..2720461,2723525..2723883,2748262..2748439,2756879..2756971,2785749..2785799,2785896..2785931,2800122..2800193,2807249..2807326,2832632..2832760,3134713..3134843))
location: region:2705298-3134843:-1
so has part: feature:3134713-3134843:-1:exon
so has part: feature:2832632-2832760:-1:exon
so has part: feature:2807249-2807326:-1:exon
so has part: feature:2800122-2800193:-1:exon
so has part: feature:2785896-2785931:-1:exon
so has part: feature:2785749-2785799:-1:exon
so has part: feature:2756879-2756971:-1:exon
so has part: feature:2748262-2748439:-1:exon
so has part: feature:2723525-2723883:-1:exon
so has part: feature:2720231-2720461:-1:exon
so has part: feature:2710966-2711073:-1:exon
so has part: feature:2708064-2708204:-1:exon
so has part: feature:2705298-2705577:-1:exon

XP_032898991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3134713-3134843:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2832632-2832760:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2807249-2807326:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2800122-2800193:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2785896-2785931:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2785749-2785799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2756879-2756971:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2748262-2748439:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2723525-2723883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2720231-2720461:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2710966-2711073:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2708064-2708204:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2705298-2705577:-1:exon

suds3
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: suds3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4589505..4655459)
location: region:4589505-4655459:-1
so has part: feature:4589505-4655459:-1:exon
subclass of: SO_0000010

116987233
type: Gene
SIO_000068: ncbigene

position:4589505:-1
position: 4589505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4655459:-1
position: 4655459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4589505-4655459:-1:exon

suds3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: suds3
product: SDS3 homolog, SIN3A corepressor complex component, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_033043103.1
SIO_010081: suds3
subclass of: SO_0000673
so part of: suds3
location: complement(join(4589505..4590291,4593984..4594068,4602698..4602803,4602945..4602966,4603777..4603838,4605316..4605411,4606304..4606460,4619773..4619792,4622220..4622291,4622503..4622558,4635747..4635819,4655303..4655459))
location: region:4589505-4655459:-1
so has part: feature:4655303-4655459:-1:exon
so has part: feature:4635747-4635819:-1:exon
so has part: feature:4622503-4622558:-1:exon
so has part: feature:4622220-4622291:-1:exon
so has part: feature:4619773-4619792:-1:exon
so has part: feature:4606304-4606460:-1:exon
so has part: feature:4605316-4605411:-1:exon
so has part: feature:4603777-4603838:-1:exon
so has part: feature:4602945-4602966:-1:exon
so has part: feature:4602698-4602803:-1:exon
so has part: feature:4593984-4594068:-1:exon
so has part: feature:4589505-4590291:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4655303-4655459:-1:exon

position:4655303:-1
position: 4655303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4635747-4635819:-1:exon

position:4635747:-1
position: 4635747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4635819:-1
position: 4635819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4622503-4622558:-1:exon

position:4622503:-1
position: 4622503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4622558:-1
position: 4622558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4622220-4622291:-1:exon

position:4622220:-1
position: 4622220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4622291:-1
position: 4622291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4619773-4619792:-1:exon

position:4619773:-1
position: 4619773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4619792:-1
position: 4619792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4606304-4606460:-1:exon

position:4606304:-1
position: 4606304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4606460:-1
position: 4606460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4605316-4605411:-1:exon

position:4605316:-1
position: 4605316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4605411:-1
position: 4605411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4603777-4603838:-1:exon

position:4603777:-1
position: 4603777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4603838:-1
position: 4603838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4602945-4602966:-1:exon

position:4602945:-1
position: 4602945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4602966:-1
position: 4602966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4602698-4602803:-1:exon

position:4602698:-1
position: 4602698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4602803:-1
position: 4602803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4593984-4594068:-1:exon

position:4593984:-1
position: 4593984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4594068:-1
position: 4594068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4589505-4590291:-1:exon

position:4590291:-1
position: 4590291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

suds3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: suds3
product: SDS3 homolog, SIN3A corepressor complex component, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_033043104.1
SIO_010081: suds3
subclass of: SO_0000673
so part of: suds3
location: complement(join(4589505..4590291,4593984..4594068,4602698..4602803,4602945..4602966,4603777..4603838,4605316..4605411,4606304..4606460,4619773..4619792,4622220..4622291,4622503..4622558,4635747..4635842,4655303..4655408))
location: region:4589505-4655408:-1
so has part: feature:4655303-4655408:-1:exon
so has part: feature:4635747-4635842:-1:exon
so has part: feature:4622503-4622558:-1:exon
so has part: feature:4622220-4622291:-1:exon
so has part: feature:4619773-4619792:-1:exon
so has part: feature:4606304-4606460:-1:exon
so has part: feature:4605316-4605411:-1:exon
so has part: feature:4603777-4603838:-1:exon
so has part: feature:4602945-4602966:-1:exon
so has part: feature:4602698-4602803:-1:exon
so has part: feature:4593984-4594068:-1:exon
so has part: feature:4589505-4590291:-1:exon

position:4655408:-1
position: 4655408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4655303-4655408:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4635747-4635842:-1:exon

position:4635842:-1
position: 4635842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4622503-4622558:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4622220-4622291:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4619773-4619792:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4606304-4606460:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4605316-4605411:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4603777-4603838:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4602945-4602966:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4602698-4602803:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4593984-4594068:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4589505-4590291:-1:exon

suds3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: suds3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sin3 histone deacetylase corepressor complex component SDS3 isoform X1
translation: MSAALLSPIVDYYNDEEELDSVDDEDERSVRCRDSDEDTEDASETDIANKQDDEDYLEVKEQMYQEKLTSLKRQLQQLQEGTLQEYQRRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKIELKENLIAELEEKKKMIENERLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTEEQIMEDLRTLNKLKSPKRPASPSSPEHPPSTPAEAPAQRYEARIEDGKLYYDKRWYHKSQAIYLESKENTKIGCVISSVGTNEIWVRKTSDSTKMRIYLGQLHRGVFIIRRRSAA
SIO_010081: suds3
subclass of: SO_0000673
so part of: suds3
location: complement(join(4590193..4590291,4593984..4594068,4602698..4602803,4602945..4602966,4603777..4603838,4605316..4605411,4606304..4606460,4619773..4619792,4622220..4622291,4622503..4622558,4635747..4635819,4655303..4655414))
location: region:4590193-4655414:-1
so has part: feature:4655303-4655414:-1:exon
so has part: feature:4635747-4635819:-1:exon
so has part: feature:4622503-4622558:-1:exon
so has part: feature:4622220-4622291:-1:exon
so has part: feature:4619773-4619792:-1:exon
so has part: feature:4606304-4606460:-1:exon
so has part: feature:4605316-4605411:-1:exon
so has part: feature:4603777-4603838:-1:exon
so has part: feature:4602945-4602966:-1:exon
so has part: feature:4602698-4602803:-1:exon
so has part: feature:4593984-4594068:-1:exon
so has part: feature:4590193-4590291:-1:exon

XP_032898994.1
type: Protein
SIO_000068: ncbiprotein

position:4590193:-1
position: 4590193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4655414:-1
position: 4655414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4655303-4655414:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4635747-4635819:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4622503-4622558:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4622220-4622291:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4619773-4619792:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4606304-4606460:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4605316-4605411:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4603777-4603838:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4602945-4602966:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4602698-4602803:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4593984-4594068:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4590193-4590291:-1:exon

suds3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: suds3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sin3 histone deacetylase corepressor complex component SDS3 isoform X2
translation: MYQEKLTSLKRQLQQLQEGTLQEYQRRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKIELKENLIAELEEKKKMIENERLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTEEQIMEDLRTLNKLKSPKRPASPSSPEHPPSTPAEAPAQRYEARIEDGKLYYDKRWYHKSQAIYLESKENTKIGCVISSVGTNEIWVRKTSDSTKMRIYLGQLHRGVFIIRRRSAA
SIO_010081: suds3
subclass of: SO_0000673
so part of: suds3
location: complement(join(4590193..4590291,4593984..4594068,4602698..4602803,4602945..4602966,4603777..4603838,4605316..4605411,4606304..4606460,4619773..4619792,4622220..4622291,4622503..4622557))
location: region:4590193-4622557:-1
so has part: feature:4622503-4622557:-1:exon
so has part: feature:4622220-4622291:-1:exon
so has part: feature:4619773-4619792:-1:exon
so has part: feature:4606304-4606460:-1:exon
so has part: feature:4605316-4605411:-1:exon
so has part: feature:4603777-4603838:-1:exon
so has part: feature:4602945-4602966:-1:exon
so has part: feature:4602698-4602803:-1:exon
so has part: feature:4593984-4594068:-1:exon
so has part: feature:4590193-4590291:-1:exon

XP_032898995.1
type: Protein
SIO_000068: ncbiprotein

position:4622557:-1
position: 4622557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4622503-4622557:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4622220-4622291:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4619773-4619792:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4606304-4606460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4605316-4605411:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4603777-4603838:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4602945-4602966:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4602698-4602803:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4593984-4594068:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4590193-4590291:-1:exon

taok3
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: taok3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4697529..4770803
location: region:4697529-4770803:1
so has part: feature:4697529-4770803:1:exon
subclass of: SO_0000010

116987234
type: Gene
SIO_000068: ncbigene

position:4697529:1
position: 4697529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4770803:1
position: 4770803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4697529-4770803:1:exon

taok3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: taok3
product: TAO kinase 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_033043106.1
SIO_010081: taok3
subclass of: SO_0000673
so part of: taok3
location: join(4697529..4697663,4698238..4698329,4703004..4703097,4703522..4703603,4718062..4718226,4735613..4735750,4742612..4742848,4749871..4749999,4750649..4750852,4754176..4754415,4763707..4763919,4766143..4766325,4769150..4770803)
location: region:4697529-4770803:1
so has part: feature:4697529-4697663:1:exon
so has part: feature:4698238-4698329:1:exon
so has part: feature:4703004-4703097:1:exon
so has part: feature:4703522-4703603:1:exon
so has part: feature:4718062-4718226:1:exon
so has part: feature:4735613-4735750:1:exon
so has part: feature:4742612-4742848:1:exon
so has part: feature:4749871-4749999:1:exon
so has part: feature:4750649-4750852:1:exon
so has part: feature:4754176-4754415:1:exon
so has part: feature:4763707-4763919:1:exon
so has part: feature:4766143-4766325:1:exon
so has part: feature:4769150-4770803:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4697529-4697663:1:exon

position:4697663:1
position: 4697663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4698238-4698329:1:exon

position:4698238:1
position: 4698238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4698329:1
position: 4698329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4703004-4703097:1:exon

position:4703004:1
position: 4703004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4703097:1
position: 4703097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4703522-4703603:1:exon

position:4703522:1
position: 4703522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4703603:1
position: 4703603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4718062-4718226:1:exon

position:4718062:1
position: 4718062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4718226:1
position: 4718226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4735613-4735750:1:exon

position:4735613:1
position: 4735613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4735750:1
position: 4735750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4742612-4742848:1:exon

position:4742612:1
position: 4742612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4742848:1
position: 4742848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4749871-4749999:1:exon

position:4749871:1
position: 4749871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4749999:1
position: 4749999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4750649-4750852:1:exon

position:4750649:1
position: 4750649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4750852:1
position: 4750852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4754176-4754415:1:exon

position:4754176:1
position: 4754176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4754415:1
position: 4754415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4763707-4763919:1:exon

position:4763707:1
position: 4763707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4763919:1
position: 4763919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4766143-4766325:1:exon

position:4766143:1
position: 4766143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4766325:1
position: 4766325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4769150-4770803:1:exon

position:4769150:1
position: 4769150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

taok3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: taok3
product: TAO kinase 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_033043107.1
SIO_010081: taok3
subclass of: SO_0000673
so part of: taok3
location: join(4697541..4697663,4698238..4698329,4703004..4703603,4718062..4718226,4726777..4726980,4735613..4735750,4742612..4742848,4749871..4749999,4750649..4750852,4754176..4754415,4763707..4763919,4766143..4766325,4769150..4770803)
location: region:4697541-4770803:1
so has part: feature:4697541-4697663:1:exon
so has part: feature:4698238-4698329:1:exon
so has part: feature:4703004-4703603:1:exon
so has part: feature:4718062-4718226:1:exon
so has part: feature:4726777-4726980:1:exon
so has part: feature:4735613-4735750:1:exon
so has part: feature:4742612-4742848:1:exon
so has part: feature:4749871-4749999:1:exon
so has part: feature:4750649-4750852:1:exon
so has part: feature:4754176-4754415:1:exon
so has part: feature:4763707-4763919:1:exon
so has part: feature:4766143-4766325:1:exon
so has part: feature:4769150-4770803:1:exon

position:4697541:1
position: 4697541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4697541-4697663:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4698238-4698329:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4703004-4703603:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4718062-4718226:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4726777-4726980:1:exon

position:4726777:1
position: 4726777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4726980:1
position: 4726980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4735613-4735750:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4742612-4742848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4749871-4749999:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4750649-4750852:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4754176-4754415:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4763707-4763919:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4766143-4766325:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4769150-4770803:1:exon

taok3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: taok3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase TAO3 isoform X1
translation: MAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPILQSNEWSQFFRNFVDYCLQKIPQDRPTSSELLRHEFVRREHPQRVLCDLIARTKDAVRELDNLQYRKMKKILFQETRNGPTESQEEEEQDHVFIRDEAGQKDSRPDLRPTPSLHSRASLLKNREHFATIRTASLVTRQIHEHEQENELREQMSGYKRMRRQHQKQLMALENKLKAEMDEHRLRLEKEVETQCNNASIELEKLAKKQQISMEKEMKIAAQDEKKTQQHIAAQQKKELTIFLESQRRQYKLCKEKIKEEMNEDHSTPKKEKQERLSRHKENLQHTQAEEESQLLGRQRLQYDRNCRELKRRLLIMRHNLEQEHLREEVNKKQTQKEMEHAMLIRHDESTQELEFRQLNMLQRLRIDLIRLQHQTELENQTEYNTRRERELHRKHVLELRQQPKSLKAMELQIKKQFQDTCKVQTKQYKALRNHQLEVTPKSDHKMVLKALKEEQTRKLAILAEQYEQSINEMMASQALRLDEAQEAECQALKHQLQQEMELLNAYQSKIKMQTEAQHERELQKLEQLVSLRRARLEQKIEEELAALQKDRTERIRNLLERREREIENFDVETLRLGFGNLVTLDYPKEDYR
SIO_010081: taok3
subclass of: SO_0000673
so part of: taok3
location: join(4698239..4698329,4703004..4703097,4703522..4703603,4718062..4718226,4735613..4735750,4742612..4742848,4749871..4749999,4750649..4750852,4754176..4754415,4763707..4763919,4766143..4766325,4769150..4769311)
location: region:4698239-4769311:1
so has part: feature:4698239-4698329:1:exon
so has part: feature:4703004-4703097:1:exon
so has part: feature:4703522-4703603:1:exon
so has part: feature:4718062-4718226:1:exon
so has part: feature:4735613-4735750:1:exon
so has part: feature:4742612-4742848:1:exon
so has part: feature:4749871-4749999:1:exon
so has part: feature:4750649-4750852:1:exon
so has part: feature:4754176-4754415:1:exon
so has part: feature:4763707-4763919:1:exon
so has part: feature:4766143-4766325:1:exon
so has part: feature:4769150-4769311:1:exon

XP_032898997.1
type: Protein
SIO_000068: ncbiprotein

position:4698239:1
position: 4698239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4769311:1
position: 4769311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4698239-4698329:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4703004-4703097:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4703522-4703603:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4718062-4718226:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4735613-4735750:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4742612-4742848:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4749871-4749999:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4750649-4750852:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4754176-4754415:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4763707-4763919:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4766143-4766325:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4769150-4769311:1:exon

taok3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: taok3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase TAO3 isoform X2
translation: MKKILFQETRNGPTESQEEEEDSEHGAGLGSKVDSLGSNQSIPSMSISTGSQNSSVNSLHEVFDDSSEIAMMHDGDNTMQSNVSVIHRKQDHVFIRDEAGQKDSRPDLRPTPSLHSRASLLKNREHFATIRTASLVTRQIHEHEQENELREQMSGYKRMRRQHQKQLMALENKLKAEMDEHRLRLEKEVETQCNNASIELEKLAKKQQISMEKEMKIAAQDEKKTQQHIAAQQKKELTIFLESQRRQYKLCKEKIKEEMNEDHSTPKKEKQERLSRHKENLQHTQAEEESQLLGRQRLQYDRNCRELKRRLLIMRHNLEQEHLREEVNKKQTQKEMEHAMLIRHDESTQELEFRQLNMLQRLRIDLIRLQHQTELENQTEYNTRRERELHRKHVLELRQQPKSLKAMELQIKKQFQDTCKVQTKQYKALRNHQLEVTPKSDHKMVLKALKEEQTRKLAILAEQYEQSINEMMASQALRLDEAQEAECQALKHQLQQEMELLNAYQSKIKMQTEAQHERELQKLEQLVSLRRARLEQKIEEELAALQKDRTERIRNLLERREREIENFDVETLRLGFGNLVTLDYPKEDYR
SIO_010081: taok3
subclass of: SO_0000673
so part of: taok3
location: join(4718164..4718226,4726777..4726980,4735613..4735750,4742612..4742848,4749871..4749999,4750649..4750852,4754176..4754415,4763707..4763919,4766143..4766325,4769150..4769311)
location: region:4718164-4769311:1
so has part: feature:4718164-4718226:1:exon
so has part: feature:4726777-4726980:1:exon
so has part: feature:4735613-4735750:1:exon
so has part: feature:4742612-4742848:1:exon
so has part: feature:4749871-4749999:1:exon
so has part: feature:4750649-4750852:1:exon
so has part: feature:4754176-4754415:1:exon
so has part: feature:4763707-4763919:1:exon
so has part: feature:4766143-4766325:1:exon
so has part: feature:4769150-4769311:1:exon

XP_032898998.1
type: Protein
SIO_000068: ncbiprotein

position:4718164:1
position: 4718164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4718164-4718226:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4726777-4726980:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4735613-4735750:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4742612-4742848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4749871-4749999:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4750649-4750852:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4754176-4754415:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4763707-4763919:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4766143-4766325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4769150-4769311:1:exon

pebp1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: pebp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4780973..4798660)
location: region:4780973-4798660:-1
so has part: feature:4780973-4798660:-1:exon
subclass of: SO_0000010

116987236
type: Gene
SIO_000068: ncbigene

position:4780973:-1
position: 4780973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4798660:-1
position: 4798660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4780973-4798660:-1:exon

pebp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: pebp1
product: phosphatidylethanolamine binding protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 32 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
transcript id: XM_033043110.1
SIO_010081: pebp1
subclass of: SO_0000673
so part of: pebp1
location: complement(join(4780973..4781337,4793129..4793229,4795870..4795979,4798195..4798660))
location: region:4780973-4798660:-1
so has part: feature:4798195-4798660:-1:exon
so has part: feature:4795870-4795979:-1:exon
so has part: feature:4793129-4793229:-1:exon
so has part: feature:4780973-4781337:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4798195-4798660:-1:exon

position:4798195:-1
position: 4798195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4795870-4795979:-1:exon

position:4795870:-1
position: 4795870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4795979:-1
position: 4795979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4793129-4793229:-1:exon

position:4793129:-1
position: 4793129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4793229:-1
position: 4793229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4780973-4781337:-1:exon

position:4781337:-1
position: 4781337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

pebp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: pebp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylethanolamine-binding protein 1
translation: MADELQAWSGPLALNEVDEKPQHPLAVKYDGVDIDALGKVLTPTQVQKRPVSINWPGCSPAKQYTLVLTDPDAPSREKPKFREWHHFLVVNMKGNDIKSGEILSDYVGSGPPQGTGLHRYVWLVYEQSKALQCDEPRLTNRSGDKRGNFKTAAFRKKYSLGSPVAGICYQAEWDNYVPKLYDQLAGK
SIO_010081: pebp1
subclass of: SO_0000673
so part of: pebp1
location: complement(join(4781120..4781337,4793129..4793229,4795870..4795979,4798195..4798329))
location: region:4781120-4798329:-1
so has part: feature:4798195-4798329:-1:exon
so has part: feature:4795870-4795979:-1:exon
so has part: feature:4793129-4793229:-1:exon
so has part: feature:4781120-4781337:-1:exon

XP_032899001.1
type: Protein
SIO_000068: ncbiprotein

position:4781120:-1
position: 4781120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4798329:-1
position: 4798329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4798195-4798329:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4795870-4795979:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4793129-4793229:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4781120-4781337:-1:exon

nos1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: nos1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4850721..4978164)
location: region:4850721-4978164:-1
so has part: feature:4850721-4978164:-1:exon
subclass of: SO_0000010

116987235
type: Gene
SIO_000068: ncbigene

position:4850721:-1
position: 4850721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4978164:-1
position: 4978164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4850721-4978164:-1:exon

nos1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: nos1
product: nitric oxide synthase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033043108.1
SIO_010081: nos1
subclass of: SO_0000673
so part of: nos1
location: complement(join(4850721..4851195,4856815..4856933,4859018..4859212,4863410..4863558,4864298..4864419,4868417..4868504,4871535..4871745,4873589..4873758,4875277..4875470,4880660..4880738,4880829..4880967,4882765..4882939,4883630..4883746,4884184..4884242,4884944..4885048,4891994..4892138,4893414..4893499,4896438..4896632,4896718..4896819,4908512..4908686,4911095..4911234,4911336..4911477,4914690..4914781,4915767..4915929,4917594..4917739,4917847..4917984,4923567..4923669,4977903..4978164))
location: region:4850721-4978164:-1
so has part: feature:4977903-4978164:-1:exon
so has part: feature:4923567-4923669:-1:exon
so has part: feature:4917847-4917984:-1:exon
so has part: feature:4917594-4917739:-1:exon
so has part: feature:4915767-4915929:-1:exon
so has part: feature:4914690-4914781:-1:exon
so has part: feature:4911336-4911477:-1:exon
so has part: feature:4911095-4911234:-1:exon
so has part: feature:4908512-4908686:-1:exon
so has part: feature:4896718-4896819:-1:exon
so has part: feature:4896438-4896632:-1:exon
so has part: feature:4893414-4893499:-1:exon
so has part: feature:4891994-4892138:-1:exon
so has part: feature:4884944-4885048:-1:exon
so has part: feature:4884184-4884242:-1:exon
so has part: feature:4883630-4883746:-1:exon
so has part: feature:4882765-4882939:-1:exon
so has part: feature:4880829-4880967:-1:exon
so has part: feature:4880660-4880738:-1:exon
so has part: feature:4875277-4875470:-1:exon
so has part: feature:4873589-4873758:-1:exon
so has part: feature:4871535-4871745:-1:exon
so has part: feature:4868417-4868504:-1:exon
so has part: feature:4864298-4864419:-1:exon
so has part: feature:4863410-4863558:-1:exon
so has part: feature:4859018-4859212:-1:exon
so has part: feature:4856815-4856933:-1:exon
so has part: feature:4850721-4851195:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4977903-4978164:-1:exon

position:4977903:-1
position: 4977903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4923567-4923669:-1:exon

position:4923567:-1
position: 4923567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4923669:-1
position: 4923669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4917847-4917984:-1:exon

position:4917847:-1
position: 4917847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4917984:-1
position: 4917984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4917594-4917739:-1:exon

position:4917594:-1
position: 4917594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4917739:-1
position: 4917739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4915767-4915929:-1:exon

position:4915767:-1
position: 4915767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4915929:-1
position: 4915929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4914690-4914781:-1:exon

position:4914690:-1
position: 4914690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4914781:-1
position: 4914781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4911336-4911477:-1:exon

position:4911336:-1
position: 4911336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4911477:-1
position: 4911477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4911095-4911234:-1:exon

position:4911095:-1
position: 4911095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4911234:-1
position: 4911234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4908512-4908686:-1:exon

position:4908512:-1
position: 4908512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4908686:-1
position: 4908686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4896718-4896819:-1:exon

position:4896718:-1
position: 4896718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4896819:-1
position: 4896819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4896438-4896632:-1:exon

position:4896438:-1
position: 4896438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4896632:-1
position: 4896632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4893414-4893499:-1:exon

position:4893414:-1
position: 4893414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4893499:-1
position: 4893499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4891994-4892138:-1:exon

position:4891994:-1
position: 4891994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4892138:-1
position: 4892138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4884944-4885048:-1:exon

position:4884944:-1
position: 4884944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4885048:-1
position: 4885048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4884184-4884242:-1:exon

position:4884184:-1
position: 4884184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4884242:-1
position: 4884242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4883630-4883746:-1:exon

position:4883630:-1
position: 4883630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4883746:-1
position: 4883746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4882765-4882939:-1:exon

position:4882765:-1
position: 4882765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4882939:-1
position: 4882939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4880829-4880967:-1:exon

position:4880829:-1
position: 4880829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4880967:-1
position: 4880967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4880660-4880738:-1:exon

position:4880660:-1
position: 4880660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4880738:-1
position: 4880738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:4875277-4875470:-1:exon

position:4875277:-1
position: 4875277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4875470:-1
position: 4875470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:4873589-4873758:-1:exon

position:4873589:-1
position: 4873589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4873758:-1
position: 4873758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:4871535-4871745:-1:exon

position:4871535:-1
position: 4871535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4871745:-1
position: 4871745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:4868417-4868504:-1:exon

position:4868417:-1
position: 4868417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4868504:-1
position: 4868504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:4864298-4864419:-1:exon

position:4864298:-1
position: 4864298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4864419:-1
position: 4864419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:4863410-4863558:-1:exon

position:4863410:-1
position: 4863410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4863558:-1
position: 4863558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:4859018-4859212:-1:exon

position:4859018:-1
position: 4859018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4859212:-1
position: 4859212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:4856815-4856933:-1:exon

position:4856815:-1
position: 4856815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4856933:-1
position: 4856933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:4850721-4851195:-1:exon

position:4851195:-1
position: 4851195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

nos1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: nos1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nitric oxide synthase, brain isoform X1
translation: MADLHQQCLDLQSENDRPPNDLPTVLPNSHSEQVVSPVQVSPTKKSPNDSPSKSPRFAKIKNWETGTVLNDTLHLNSGVANGCREQLCLGSIMMPSQHVKKPSKARTKENLLPLAADFLNQYYTSIERYGSEAHIQRMENVTKEIETMGTYQLKDTELIYGAKHAWRNAARCIGRIQWSKLQVFDARDCSTAHSMFNYICNHIKYATNKGNLRSAITIFPQRTDEKHDFRIWNNQFIKYAGYRQPDGSIVGDPASVDLTEVCMQQGWKGPNGRFDVLPLLLQANGNDPEQFEITPELILEVPITHPRFEWFEDLKLKWYCLPAVSNMLLDIGGLEFPASPFNGWYMGTEIGVRNFCDTSRYSVLEDVAKRIGLNTGNISSLWKDLALVEINIAVLHSFQSKKVTIMDHHSAAESFMKHMDNEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNYHLSPSFEYQIDAWLTHVWKGANGTPTKKRAIGFKKLAKAVKFSTKLMRQVMAKRVKANILYATETGKSQSYAKTLCEIFKHAFDAKVISMDEYDIVHLEHEALVLVITSTFGNGDPPENGEKFSSALMEIKHPHSKSAKGPGYKIRFNSVSSISDARKSSSAEPEHRDSFGSTGPLANVRFSVFGLGSRVYPHFCAFARAVDTLLEEFGGERIMRMGEGDELCGQEESFRTWAKRVFKTACDVFCVGDDVNIENANKSLISNDRSWKRAKFRLSYQTTAPDLTQALNSIHKKKISAARLLSRHNLQNPKSSRSTILLRIHTDNLDGLSYQPGDHLCVFPGNHEILVNALINQLEDPPPANKVIKVEFLEEKTTALGVIGNWCDETRIPPSTISQAFKYYLDITTPPIPLLLQQFALLAKDDQQKKRLEVLSKGLKEYEEWKWYNNPTIVEVLEEFPSVQVPATLLLTQLPLLQPRYYSISSSPDLYPDEIHLTVAVVSYHTRDGEGSLHHGVCSSWLNRIDSDEMVPCFVRGAPSFRLPKDPLVPCFLIGPGTGIAPFRSFWQQRMYYVEHNGMKAGPMTLVFGCRQSHIDHIYREETIHVKNKGVFKELHTAYSREPGKPKKYVQDVLREHYSDQIVELLQDQGGHIYVCGDVTMAGDVLKTIQHILAQQGKMSLEDAGIFISKLRDENRYHEDIFGVTLRTHEVTNRLRSESIAFIEESKKDSDEVFCA
SIO_010081: nos1
subclass of: SO_0000673
so part of: nos1
location: complement(join(4851180..4851195,4856815..4856933,4859018..4859212,4863410..4863558,4864298..4864419,4868417..4868504,4871535..4871745,4873589..4873758,4875277..4875470,4880660..4880738,4880829..4880967,4882765..4882939,4883630..4883746,4884184..4884242,4884944..4885048,4891994..4892138,4893414..4893499,4896438..4896632,4896718..4896819,4908512..4908686,4911095..4911234,4911336..4911477,4914690..4914781,4915767..4915929,4917594..4917739,4917847..4917984,4923567..4923665))
location: region:4851180-4923665:-1
so has part: feature:4923567-4923665:-1:exon
so has part: feature:4917847-4917984:-1:exon
so has part: feature:4917594-4917739:-1:exon
so has part: feature:4915767-4915929:-1:exon
so has part: feature:4914690-4914781:-1:exon
so has part: feature:4911336-4911477:-1:exon
so has part: feature:4911095-4911234:-1:exon
so has part: feature:4908512-4908686:-1:exon
so has part: feature:4896718-4896819:-1:exon
so has part: feature:4896438-4896632:-1:exon
so has part: feature:4893414-4893499:-1:exon
so has part: feature:4891994-4892138:-1:exon
so has part: feature:4884944-4885048:-1:exon
so has part: feature:4884184-4884242:-1:exon
so has part: feature:4883630-4883746:-1:exon
so has part: feature:4882765-4882939:-1:exon
so has part: feature:4880829-4880967:-1:exon
so has part: feature:4880660-4880738:-1:exon
so has part: feature:4875277-4875470:-1:exon
so has part: feature:4873589-4873758:-1:exon
so has part: feature:4871535-4871745:-1:exon
so has part: feature:4868417-4868504:-1:exon
so has part: feature:4864298-4864419:-1:exon
so has part: feature:4863410-4863558:-1:exon
so has part: feature:4859018-4859212:-1:exon
so has part: feature:4856815-4856933:-1:exon
so has part: feature:4851180-4851195:-1:exon

XP_032898999.1
type: Protein
SIO_000068: ncbiprotein

position:4851180:-1
position: 4851180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4923665:-1
position: 4923665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4923567-4923665:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4917847-4917984:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4917594-4917739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4915767-4915929:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4914690-4914781:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4911336-4911477:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4911095-4911234:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4908512-4908686:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896718-4896819:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4896438-4896632:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4893414-4893499:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4891994-4892138:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4884944-4885048:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4884184-4884242:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4883630-4883746:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4882765-4882939:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4880829-4880967:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4880660-4880738:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4875277-4875470:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4873589-4873758:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4871535-4871745:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4868417-4868504:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4864298-4864419:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4863410-4863558:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4859018-4859212:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4856815-4856933:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4851180-4851195:-1:exon

nos1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: nos1
product: nitric oxide synthase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033043109.1
SIO_010081: nos1
subclass of: SO_0000673
so part of: nos1
location: complement(join(4856811..4856933,4859018..4859212,4863410..4863558,4864298..4864419,4868417..4868504,4871535..4871745,4873589..4873758,4875277..4875470,4880660..4880738,4880829..4880967,4882765..4882939,4883630..4883746,4884184..4884242,4884944..4885048,4891994..4892138,4893414..4893499,4896438..4896632,4896718..4896819,4908512..4908686,4911095..4911234,4911336..4911477,4914690..4914781,4915767..4915929,4917594..4917739,4917847..4917984,4923567..4923669,4977903..4978164))
location: region:4856811-4978164:-1
so has part: feature:4977903-4978164:-1:exon
so has part: feature:4923567-4923669:-1:exon
so has part: feature:4917847-4917984:-1:exon
so has part: feature:4917594-4917739:-1:exon
so has part: feature:4915767-4915929:-1:exon
so has part: feature:4914690-4914781:-1:exon
so has part: feature:4911336-4911477:-1:exon
so has part: feature:4911095-4911234:-1:exon
so has part: feature:4908512-4908686:-1:exon
so has part: feature:4896718-4896819:-1:exon
so has part: feature:4896438-4896632:-1:exon
so has part: feature:4893414-4893499:-1:exon
so has part: feature:4891994-4892138:-1:exon
so has part: feature:4884944-4885048:-1:exon
so has part: feature:4884184-4884242:-1:exon
so has part: feature:4883630-4883746:-1:exon
so has part: feature:4882765-4882939:-1:exon
so has part: feature:4880829-4880967:-1:exon
so has part: feature:4880660-4880738:-1:exon
so has part: feature:4875277-4875470:-1:exon
so has part: feature:4873589-4873758:-1:exon
so has part: feature:4871535-4871745:-1:exon
so has part: feature:4868417-4868504:-1:exon
so has part: feature:4864298-4864419:-1:exon
so has part: feature:4863410-4863558:-1:exon
so has part: feature:4859018-4859212:-1:exon
so has part: feature:4856811-4856933:-1:exon

position:4856811:-1
position: 4856811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4977903-4978164:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4923567-4923669:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4917847-4917984:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4917594-4917739:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4915767-4915929:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4914690-4914781:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4911336-4911477:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4911095-4911234:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4908512-4908686:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4896718-4896819:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896438-4896632:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4893414-4893499:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4891994-4892138:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4884944-4885048:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4884184-4884242:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4883630-4883746:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4882765-4882939:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4880829-4880967:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4880660-4880738:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4875277-4875470:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4873589-4873758:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4871535-4871745:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4868417-4868504:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4864298-4864419:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4863410-4863558:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4859018-4859212:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4856811-4856933:-1:exon

nos1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: nos1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nitric oxide synthase, brain isoform X2
translation: MADLHQQCLDLQSENDRPPNDLPTVLPNSHSEQVVSPVQVSPTKKSPNDSPSKSPRFAKIKNWETGTVLNDTLHLNSGVANGCREQLCLGSIMMPSQHVKKPSKARTKENLLPLAADFLNQYYTSIERYGSEAHIQRMENVTKEIETMGTYQLKDTELIYGAKHAWRNAARCIGRIQWSKLQVFDARDCSTAHSMFNYICNHIKYATNKGNLRSAITIFPQRTDEKHDFRIWNNQFIKYAGYRQPDGSIVGDPASVDLTEVCMQQGWKGPNGRFDVLPLLLQANGNDPEQFEITPELILEVPITHPRFEWFEDLKLKWYCLPAVSNMLLDIGGLEFPASPFNGWYMGTEIGVRNFCDTSRYSVLEDVAKRIGLNTGNISSLWKDLALVEINIAVLHSFQSKKVTIMDHHSAAESFMKHMDNEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNYHLSPSFEYQIDAWLTHVWKGANGTPTKKRAIGFKKLAKAVKFSTKLMRQVMAKRVKANILYATETGKSQSYAKTLCEIFKHAFDAKVISMDEYDIVHLEHEALVLVITSTFGNGDPPENGEKFSSALMEIKHPHSKSAKGPGYKIRFNSVSSISDARKSSSAEPEHRDSFGSTGPLANVRFSVFGLGSRVYPHFCAFARAVDTLLEEFGGERIMRMGEGDELCGQEESFRTWAKRVFKTACDVFCVGDDVNIENANKSLISNDRSWKRAKFRLSYQTTAPDLTQALNSIHKKKISAARLLSRHNLQNPKSSRSTILLRIHTDNLDGLSYQPGDHLCVFPGNHEILVNALINQLEDPPPANKVIKVEFLEEKTTALGVIGNWCDETRIPPSTISQAFKYYLDITTPPIPLLLQQFALLAKDDQQKKRLEVLSKGLKEYEEWKWYNNPTIVEVLEEFPSVQVPATLLLTQLPLLQPRYYSISSSPDLYPDEIHLTVAVVSYHTRDGEGSLHHGVCSSWLNRIDSDEMVPCFVRGAPSFRLPKDPLVPCFLIGPGTGIAPFRSFWQQRMYYVEHNGMKAGPMTLVFGCRQSHIDHIYREETIHVKNKGVFKELHTAYSREPGKPKKYVQDVLREHYSDQIVELLQDQGGHIYVCGDVTMAGDVLKTIQHILAQQGKMSLEDAGIFISKLRDENRYHEDIFGVTLRTHEVTNRLRSESIAFIEESKKDSDE
SIO_010081: nos1
subclass of: SO_0000673
so part of: nos1
location: complement(join(4856811..4856933,4859018..4859212,4863410..4863558,4864298..4864419,4868417..4868504,4871535..4871745,4873589..4873758,4875277..4875470,4880660..4880738,4880829..4880967,4882765..4882939,4883630..4883746,4884184..4884242,4884944..4885048,4891994..4892138,4893414..4893499,4896438..4896632,4896718..4896819,4908512..4908686,4911095..4911234,4911336..4911477,4914690..4914781,4915767..4915929,4917594..4917739,4917847..4917984,4923567..4923665))
location: region:4856811-4923665:-1
so has part: feature:4923567-4923665:-1:exon
so has part: feature:4917847-4917984:-1:exon
so has part: feature:4917594-4917739:-1:exon
so has part: feature:4915767-4915929:-1:exon
so has part: feature:4914690-4914781:-1:exon
so has part: feature:4911336-4911477:-1:exon
so has part: feature:4911095-4911234:-1:exon
so has part: feature:4908512-4908686:-1:exon
so has part: feature:4896718-4896819:-1:exon
so has part: feature:4896438-4896632:-1:exon
so has part: feature:4893414-4893499:-1:exon
so has part: feature:4891994-4892138:-1:exon
so has part: feature:4884944-4885048:-1:exon
so has part: feature:4884184-4884242:-1:exon
so has part: feature:4883630-4883746:-1:exon
so has part: feature:4882765-4882939:-1:exon
so has part: feature:4880829-4880967:-1:exon
so has part: feature:4880660-4880738:-1:exon
so has part: feature:4875277-4875470:-1:exon
so has part: feature:4873589-4873758:-1:exon
so has part: feature:4871535-4871745:-1:exon
so has part: feature:4868417-4868504:-1:exon
so has part: feature:4864298-4864419:-1:exon
so has part: feature:4863410-4863558:-1:exon
so has part: feature:4859018-4859212:-1:exon
so has part: feature:4856811-4856933:-1:exon

XP_032899000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4923567-4923665:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4917847-4917984:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4917594-4917739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4915767-4915929:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4914690-4914781:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4911336-4911477:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4911095-4911234:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4908512-4908686:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896718-4896819:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4896438-4896632:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4893414-4893499:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4891994-4892138:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4884944-4885048:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4884184-4884242:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4883630-4883746:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4882765-4882939:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4880829-4880967:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4880660-4880738:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4875277-4875470:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4873589-4873758:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4871535-4871745:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4868417-4868504:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4864298-4864419:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4863410-4863558:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4859018-4859212:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4856811-4856933:-1:exon

LOC116987238
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987238
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4873882..4875531
location: region:4873882-4875531:1
so has part: feature:4873882-4875531:1:exon
subclass of: SO_0000011

116987238
type: Gene
SIO_000068: ncbigene

position:4873882:1
position: 4873882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4875531:1
position: 4875531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4873882-4875531:1:exon

LOC116987238
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987238
product: uncharacterized LOC116987238
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004415672.1
SIO_010081: LOC116987238
subclass of: SO_0000673
so part of: LOC116987238
location: join(4873882..4874101,4875302..4875531)
location: region:4873882-4875531:1
so has part: feature:4873882-4874101:1:exon
so has part: feature:4875302-4875531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4873882-4874101:1:exon

position:4874101:1
position: 4874101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4875302-4875531:1:exon

position:4875302:1
position: 4875302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987237
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987237
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4893461..4902863
location: region:4893461-4902863:1
so has part: feature:4893461-4902863:1:exon
subclass of: SO_0000011

116987237
type: Gene
SIO_000068: ncbigene

position:4893461:1
position: 4893461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4902863:1
position: 4902863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4893461-4902863:1:exon

LOC116987237
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987237
product: uncharacterized LOC116987237
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004415671.1
SIO_010081: LOC116987237
subclass of: SO_0000673
so part of: LOC116987237
location: join(4893461..4893493,4897017..4897022,4902851..4902863)
location: region:4893461-4902863:1
so has part: feature:4893461-4893493:1:exon
so has part: feature:4897017-4897022:1:exon
so has part: feature:4902851-4902863:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4893461-4893493:1:exon

position:4893493:1
position: 4893493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4897017-4897022:1:exon

position:4897017:1
position: 4897017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4897022:1
position: 4897022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4902851-4902863:1:exon

position:4902851:1
position: 4902851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ksr2
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: ksr2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5037261..5430641)
location: region:5037261-5430641:-1
so has part: feature:5037261-5430641:-1:exon
subclass of: SO_0000010

116987239
type: Gene
SIO_000068: ncbigene

position:5037261:-1
position: 5037261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5430641:-1
position: 5430641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5037261-5430641:-1:exon

ksr2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: ksr2
product: kinase suppressor of ras 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033043111.1
SIO_010081: ksr2
subclass of: SO_0000673
so part of: ksr2
location: complement(join(5037261..5038404,5041008..5041137,5043883..5044014,5067607..5067740,5067960..5068056,5096519..5096892,5101480..5101528,5108164..5108230,5108630..5108694,5123314..5123504,5130612..5130730,5140859..5140926,5147632..5147715,5164874..5164943,5235729..5235910,5297920..5298424,5329445..5329595,5337150..5337290,5430189..5430641))
location: region:5037261-5430641:-1
so has part: feature:5430189-5430641:-1:exon
so has part: feature:5337150-5337290:-1:exon
so has part: feature:5329445-5329595:-1:exon
so has part: feature:5297920-5298424:-1:exon
so has part: feature:5235729-5235910:-1:exon
so has part: feature:5164874-5164943:-1:exon
so has part: feature:5147632-5147715:-1:exon
so has part: feature:5140859-5140926:-1:exon
so has part: feature:5130612-5130730:-1:exon
so has part: feature:5123314-5123504:-1:exon
so has part: feature:5108630-5108694:-1:exon
so has part: feature:5108164-5108230:-1:exon
so has part: feature:5101480-5101528:-1:exon
so has part: feature:5096519-5096892:-1:exon
so has part: feature:5067960-5068056:-1:exon
so has part: feature:5067607-5067740:-1:exon
so has part: feature:5043883-5044014:-1:exon
so has part: feature:5041008-5041137:-1:exon
so has part: feature:5037261-5038404:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5430189-5430641:-1:exon

position:5430189:-1
position: 5430189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5337150-5337290:-1:exon

position:5337150:-1
position: 5337150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5337290:-1
position: 5337290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5329445-5329595:-1:exon

position:5329445:-1
position: 5329445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5329595:-1
position: 5329595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5297920-5298424:-1:exon

position:5297920:-1
position: 5297920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5298424:-1
position: 5298424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5235729-5235910:-1:exon

position:5235729:-1
position: 5235729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5235910:-1
position: 5235910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5164874-5164943:-1:exon

position:5164874:-1
position: 5164874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5164943:-1
position: 5164943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5147632-5147715:-1:exon

position:5147632:-1
position: 5147632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5147715:-1
position: 5147715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5140859-5140926:-1:exon

position:5140859:-1
position: 5140859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5140926:-1
position: 5140926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5130612-5130730:-1:exon

position:5130612:-1
position: 5130612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5130730:-1
position: 5130730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5123314-5123504:-1:exon

position:5123314:-1
position: 5123314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5123504:-1
position: 5123504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5108630-5108694:-1:exon

position:5108630:-1
position: 5108630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5108694:-1
position: 5108694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5108164-5108230:-1:exon

position:5108164:-1
position: 5108164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5108230:-1
position: 5108230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5101480-5101528:-1:exon

position:5101480:-1
position: 5101480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5101528:-1
position: 5101528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5096519-5096892:-1:exon

position:5096519:-1
position: 5096519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5096892:-1
position: 5096892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5067960-5068056:-1:exon

position:5067960:-1
position: 5067960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5068056:-1
position: 5068056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5067607-5067740:-1:exon

position:5067607:-1
position: 5067607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5067740:-1
position: 5067740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5043883-5044014:-1:exon

position:5043883:-1
position: 5043883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5044014:-1
position: 5044014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5041008-5041137:-1:exon

position:5041008:-1
position: 5041008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5041137:-1
position: 5041137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5037261-5038404:-1:exon

position:5038404:-1
position: 5038404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ksr2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: ksr2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kinase suppressor of Ras 2
translation: MDEDNKTKSEKQHLTVQKALQQCELVQNMIEISISSLEGLRTKCATANDLTQKEIRTLEGKLVKYFSRQLSCKRNVSLQERSAELEGFPHLVHWFRIVNIRKEVIEDIAPDQLTLEALLEMTDEDVCETVKKYGTNSEECARLIASLSCLRSVYKSGSGHSSQDWVIQWPTTETGKENTPVSQAEPVMWPGCSITLSPKMPSKFMQQDFHSVPVLGTNCTYTDRLTIGDPIGLYPTFESGPSSLPPSPRQRHPIHTPPRTPPIVKTMTPPGTPPVRRRNKLKPPGTPPPTSRKLIHLIPGFTALHRSKSHEFQLGNRVEETHTPKAKKKNKPLNLKIHNSVGSCENIPAQRSPLLSERSLRSFFVGHPSFLPSTPPVHTDANFSSNTLSVPRWSPQIPRRDLGNSIKHRFSTKYWMSQTCTVCGKGMLFGLKCKNCKLKCHNKCTKEAPPCHLLIIHRGARLVRTESVPCDINNPLKKPPRYSDLHSSQTLPKTNKINKDHIPAPYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSPQCIRQQKPFNLSGTTLHYSVSAFSLLQASHYYKYKQQFIFPDVTPETQNRTPQVVLHPVNSDPTGGNPTLRVEVNEPTSENEDANDASKSDGSEDDFEEMNLSLLSARNFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGKVYHGRWHGEVAIRLIDIERDNEDHLKLFKRKVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKMVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNIFYDNGKIIITDFGLFSISGALQEGRRESEMRIPNGWLYHLAPEIIQQLSPSTDEDKLPFSKQSDVFAFGTVWFELHAREWPFKNQPSDAIIWQAGRGMKPNLSQIGVGKEIVDILLFCWAYEQEERPSFSKIMELLEKLPKRNRRLSHPGHFWKSAEYVSLSSNV
SIO_010081: ksr2
subclass of: SO_0000673
so part of: ksr2
location: complement(join(5038243..5038404,5041008..5041137,5043883..5044014,5067607..5067740,5067960..5068056,5096519..5096892,5101480..5101528,5108164..5108230,5108630..5108694,5123314..5123504,5130612..5130730,5140859..5140926,5147632..5147715,5164874..5164943,5235729..5235910,5297920..5298424,5329445..5329595,5337150..5337290,5430189..5430365))
location: region:5038243-5430365:-1
so has part: feature:5430189-5430365:-1:exon
so has part: feature:5337150-5337290:-1:exon
so has part: feature:5329445-5329595:-1:exon
so has part: feature:5297920-5298424:-1:exon
so has part: feature:5235729-5235910:-1:exon
so has part: feature:5164874-5164943:-1:exon
so has part: feature:5147632-5147715:-1:exon
so has part: feature:5140859-5140926:-1:exon
so has part: feature:5130612-5130730:-1:exon
so has part: feature:5123314-5123504:-1:exon
so has part: feature:5108630-5108694:-1:exon
so has part: feature:5108164-5108230:-1:exon
so has part: feature:5101480-5101528:-1:exon
so has part: feature:5096519-5096892:-1:exon
so has part: feature:5067960-5068056:-1:exon
so has part: feature:5067607-5067740:-1:exon
so has part: feature:5043883-5044014:-1:exon
so has part: feature:5041008-5041137:-1:exon
so has part: feature:5038243-5038404:-1:exon

XP_032899002.1
type: Protein
SIO_000068: ncbiprotein

position:5038243:-1
position: 5038243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5430365:-1
position: 5430365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5430189-5430365:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5337150-5337290:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5329445-5329595:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5297920-5298424:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5235729-5235910:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5164874-5164943:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5147632-5147715:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5140859-5140926:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5130612-5130730:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5123314-5123504:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5108630-5108694:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5108164-5108230:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5101480-5101528:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5096519-5096892:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5067960-5068056:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5067607-5067740:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5043883-5044014:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5041008-5041137:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5038243-5038404:-1:exon

rfc5
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: rfc5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5467699..5542778
location: region:5467699-5542778:1
so has part: feature:5467699-5542778:1:exon
subclass of: SO_0000010

116987242
type: Gene
SIO_000068: ncbigene

position:5467699:1
position: 5467699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5542778:1
position: 5542778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5467699-5542778:1:exon

rfc5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rfc5
product: replication factor C subunit 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_033043113.1
SIO_010081: rfc5
subclass of: SO_0000673
so part of: rfc5
location: join(5467699..5467927,5482239..5482303,5508638..5508774,5513433..5513512,5513704..5513777,5519458..5519617,5528150..5528231,5528321..5528450,5530322..5530399,5539394..5539448,5541457..5542778)
location: region:5467699-5542778:1
so has part: feature:5467699-5467927:1:exon
so has part: feature:5482239-5482303:1:exon
so has part: feature:5508638-5508774:1:exon
so has part: feature:5513433-5513512:1:exon
so has part: feature:5513704-5513777:1:exon
so has part: feature:5519458-5519617:1:exon
so has part: feature:5528150-5528231:1:exon
so has part: feature:5528321-5528450:1:exon
so has part: feature:5530322-5530399:1:exon
so has part: feature:5539394-5539448:1:exon
so has part: feature:5541457-5542778:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5467699-5467927:1:exon

position:5467927:1
position: 5467927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5482239-5482303:1:exon

position:5482239:1
position: 5482239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5482303:1
position: 5482303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5508638-5508774:1:exon

position:5508638:1
position: 5508638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5508774:1
position: 5508774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5513433-5513512:1:exon

position:5513433:1
position: 5513433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5513512:1
position: 5513512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5513704-5513777:1:exon

position:5513704:1
position: 5513704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5513777:1
position: 5513777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5519458-5519617:1:exon

position:5519458:1
position: 5519458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5519617:1
position: 5519617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5528150-5528231:1:exon

position:5528150:1
position: 5528150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5528231:1
position: 5528231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5528321-5528450:1:exon

position:5528321:1
position: 5528321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5528450:1
position: 5528450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5530322-5530399:1:exon

position:5530322:1
position: 5530322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5530399:1
position: 5530399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5539394-5539448:1:exon

position:5539394:1
position: 5539394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5539448:1
position: 5539448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5541457-5542778:1:exon

position:5541457:1
position: 5541457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

rfc5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rfc5
product: replication factor C subunit 5, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_033043115.1
SIO_010081: rfc5
subclass of: SO_0000673
so part of: rfc5
location: join(5467699..5467927,5508638..5508774,5513433..5513512,5513704..5513777,5519458..5519617,5528150..5528231,5528321..5528450,5530322..5530399,5539394..5539448,5541457..5542778)
location: region:5467699-5542778:1
so has part: feature:5467699-5467927:1:exon
so has part: feature:5508638-5508774:1:exon
so has part: feature:5513433-5513512:1:exon
so has part: feature:5513704-5513777:1:exon
so has part: feature:5519458-5519617:1:exon
so has part: feature:5528150-5528231:1:exon
so has part: feature:5528321-5528450:1:exon
so has part: feature:5530322-5530399:1:exon
so has part: feature:5539394-5539448:1:exon
so has part: feature:5541457-5542778:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5467699-5467927:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5508638-5508774:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5513433-5513512:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5513704-5513777:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5519458-5519617:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5528150-5528231:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5528321-5528450:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5530322-5530399:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5539394-5539448:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5541457-5542778:1:exon

rfc5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rfc5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: replication factor C subunit 5 isoform X1
translation: MAAVKELRSRNLPWVEKYRPQTLDDLISHQDILNTIQRFISEDRLPHLLFYGPPGTGKTSTILACAKRLYKNKELNSMVLELNASDDRGIDTVRGPILNFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTTEQMSPRLEFVIQEEKVNITPDGLKAILTLSNGDMRRSLNILQSTSMAYDKVTEDTVYTCTGHPLKSDIANILDWMLNKDFTTAYKNIMELKTLKGLALHDILTEVHTFVHRVDLPPSIRIHLLIKMADIEYRLASGTSEKIQLSSLIAAFQAARNMVVAEA
SIO_010081: rfc5
subclass of: SO_0000673
so part of: rfc5
location: join(5467887..5467927,5482239..5482303,5508638..5508774,5513433..5513512,5513704..5513777,5519458..5519617,5528150..5528231,5528321..5528450,5530322..5530399,5539394..5539448,5541457..5541553)
location: region:5467887-5541553:1
so has part: feature:5467887-5467927:1:exon
so has part: feature:5482239-5482303:1:exon
so has part: feature:5508638-5508774:1:exon
so has part: feature:5513433-5513512:1:exon
so has part: feature:5513704-5513777:1:exon
so has part: feature:5519458-5519617:1:exon
so has part: feature:5528150-5528231:1:exon
so has part: feature:5528321-5528450:1:exon
so has part: feature:5530322-5530399:1:exon
so has part: feature:5539394-5539448:1:exon
so has part: feature:5541457-5541553:1:exon

XP_032899004.1
type: Protein
SIO_000068: ncbiprotein

position:5467887:1
position: 5467887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5541553:1
position: 5541553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5467887-5467927:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5482239-5482303:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5508638-5508774:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5513433-5513512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5513704-5513777:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5519458-5519617:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5528150-5528231:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5528321-5528450:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5530322-5530399:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5539394-5539448:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5541457-5541553:1:exon

rfc5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rfc5
product: replication factor C subunit 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_033043114.1
SIO_010081: rfc5
subclass of: SO_0000673
so part of: rfc5
location: join(5468109..5468317,5482239..5482303,5508638..5508774,5513433..5513512,5513704..5513777,5519458..5519617,5528150..5528231,5528321..5528450,5530322..5530399,5539394..5539448,5541457..5542778)
location: region:5468109-5542778:1
so has part: feature:5468109-5468317:1:exon
so has part: feature:5482239-5482303:1:exon
so has part: feature:5508638-5508774:1:exon
so has part: feature:5513433-5513512:1:exon
so has part: feature:5513704-5513777:1:exon
so has part: feature:5519458-5519617:1:exon
so has part: feature:5528150-5528231:1:exon
so has part: feature:5528321-5528450:1:exon
so has part: feature:5530322-5530399:1:exon
so has part: feature:5539394-5539448:1:exon
so has part: feature:5541457-5542778:1:exon

position:5468109:1
position: 5468109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5468109-5468317:1:exon

position:5468317:1
position: 5468317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5482239-5482303:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5508638-5508774:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5513433-5513512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5513704-5513777:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5519458-5519617:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5528150-5528231:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5528321-5528450:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5530322-5530399:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5539394-5539448:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5541457-5542778:1:exon

rfc5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rfc5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: replication factor C subunit 5 isoform X2
translation: MVLELNASDDRGIDTVRGPILNFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTTEQMSPRLEFVIQEEKVNITPDGLKAILTLSNGDMRRSLNILQSTSMAYDKVTEDTVYTCTGHPLKSDIANILDWMLNKDFTTAYKNIMELKTLKGLALHDILTEVHTFVHRVDLPPSIRIHLLIKMADIEYRLASGTSEKIQLSSLIAAFQAARNMVVAEA
SIO_010081: rfc5
subclass of: SO_0000673
so part of: rfc5
location: join(5508763..5508774,5513433..5513512,5513704..5513777,5519458..5519617,5528150..5528231,5528321..5528450,5530322..5530399,5539394..5539448,5541457..5541553)
location: region:5508763-5541553:1
so has part: feature:5508763-5508774:1:exon
so has part: feature:5513433-5513512:1:exon
so has part: feature:5513704-5513777:1:exon
so has part: feature:5519458-5519617:1:exon
so has part: feature:5528150-5528231:1:exon
so has part: feature:5528321-5528450:1:exon
so has part: feature:5530322-5530399:1:exon
so has part: feature:5539394-5539448:1:exon
so has part: feature:5541457-5541553:1:exon

XP_032899005.1
type: Protein
SIO_000068: ncbiprotein

position:5508763:1
position: 5508763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5508763-5508774:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5513433-5513512:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5513704-5513777:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5519458-5519617:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5528150-5528231:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5528321-5528450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5530322-5530399:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5539394-5539448:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5541457-5541553:1:exon

rfc5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rfc5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: replication factor C subunit 5 isoform X2
translation: MVLELNASDDRGIDTVRGPILNFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTTEQMSPRLEFVIQEEKVNITPDGLKAILTLSNGDMRRSLNILQSTSMAYDKVTEDTVYTCTGHPLKSDIANILDWMLNKDFTTAYKNIMELKTLKGLALHDILTEVHTFVHRVDLPPSIRIHLLIKMADIEYRLASGTSEKIQLSSLIAAFQAARNMVVAEA
SIO_010081: rfc5
subclass of: SO_0000673
so part of: rfc5
location: join(5508763..5508774,5513433..5513512,5513704..5513777,5519458..5519617,5528150..5528231,5528321..5528450,5530322..5530399,5539394..5539448,5541457..5541553)
location: region:5508763-5541553:1
so has part: feature:5508763-5508774:1:exon
so has part: feature:5513433-5513512:1:exon
so has part: feature:5513704-5513777:1:exon
so has part: feature:5519458-5519617:1:exon
so has part: feature:5528150-5528231:1:exon
so has part: feature:5528321-5528450:1:exon
so has part: feature:5530322-5530399:1:exon
so has part: feature:5539394-5539448:1:exon
so has part: feature:5541457-5541553:1:exon

XP_032899006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5508763-5508774:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5513433-5513512:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5513704-5513777:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5519458-5519617:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5528150-5528231:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5528321-5528450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5530322-5530399:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5539394-5539448:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5541457-5541553:1:exon

wsb2
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: wsb2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5543416..5575029)
location: region:5543416-5575029:-1
so has part: feature:5543416-5575029:-1:exon
subclass of: SO_0000010

116987240
type: Gene
SIO_000068: ncbigene

position:5543416:-1
position: 5543416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5575029:-1
position: 5575029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5543416-5575029:-1:exon

wsb2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: wsb2
product: WD repeat and SOCS box containing 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_033043112.1
SIO_010081: wsb2
subclass of: SO_0000673
so part of: wsb2
location: complement(join(5543416..5545174,5545441..5545548,5545883..5545999,5551796..5551974,5555973..5556073,5559214..5559345,5563377..5563609,5572686..5572860,5574749..5575029))
location: region:5543416-5575029:-1
so has part: feature:5574749-5575029:-1:exon
so has part: feature:5572686-5572860:-1:exon
so has part: feature:5563377-5563609:-1:exon
so has part: feature:5559214-5559345:-1:exon
so has part: feature:5555973-5556073:-1:exon
so has part: feature:5551796-5551974:-1:exon
so has part: feature:5545883-5545999:-1:exon
so has part: feature:5545441-5545548:-1:exon
so has part: feature:5543416-5545174:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5574749-5575029:-1:exon

position:5574749:-1
position: 5574749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5572686-5572860:-1:exon

position:5572686:-1
position: 5572686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5572860:-1
position: 5572860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5563377-5563609:-1:exon

position:5563377:-1
position: 5563377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5563609:-1
position: 5563609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5559214-5559345:-1:exon

position:5559214:-1
position: 5559214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5559345:-1
position: 5559345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5555973-5556073:-1:exon

position:5555973:-1
position: 5555973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5556073:-1
position: 5556073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5551796-5551974:-1:exon

position:5551796:-1
position: 5551796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5551974:-1
position: 5551974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5545883-5545999:-1:exon

position:5545883:-1
position: 5545883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5545999:-1
position: 5545999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5545441-5545548:-1:exon

position:5545441:-1
position: 5545441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5545548:-1
position: 5545548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5543416-5545174:-1:exon

position:5545174:-1
position: 5545174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

wsb2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: wsb2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: WD repeat and SOCS box-containing protein 2
translation: MDEYIECNAEPRSLLVAKLVPNRSPELDFKSGSETWGVAFSPDGSYFAWSQGYNIVTLIPWPLEDRRISHKIASRLKLDRKGRSQCGEKIIDCGQNVWGLAIGAPQPENGGRSSVNQSKCVSRISGMVLATGLANGEIKLWEVPSAHLLFNLKGHQAVVRSIAFISNENFMLVSASRDTTLRVWDLQQDGNLLHLLDDHRQWVYCCAVSPDSSKLCSVGGGKTLQVLLWSTISYTVIRKLEGHNADVVSCEFSPDGALLATASYDTHVIVWDPHTGESLMKLRHCSPAAATLDVDDGFRTAFVRAVSFSQEGLNLASVTDDRLLRIWSLDLQRPITVAPLANGLCCTFSPHGGVLATGTRDGHVKFWTVSRVLPTLQHICRSTLRYVMSTQQIMLLQVPKKIKEFLTYKSF
SIO_010081: wsb2
subclass of: SO_0000673
so part of: wsb2
location: complement(join(5545012..5545174,5545441..5545548,5545883..5545999,5551796..5551974,5555973..5556073,5559214..5559345,5563377..5563609,5572686..5572860,5574749..5574776))
location: region:5545012-5574776:-1
so has part: feature:5574749-5574776:-1:exon
so has part: feature:5572686-5572860:-1:exon
so has part: feature:5563377-5563609:-1:exon
so has part: feature:5559214-5559345:-1:exon
so has part: feature:5555973-5556073:-1:exon
so has part: feature:5551796-5551974:-1:exon
so has part: feature:5545883-5545999:-1:exon
so has part: feature:5545441-5545548:-1:exon
so has part: feature:5545012-5545174:-1:exon

XP_032899003.1
type: Protein
SIO_000068: ncbiprotein

position:5545012:-1
position: 5545012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5574776:-1
position: 5574776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5574749-5574776:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5572686-5572860:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5563377-5563609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5559214-5559345:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5555973-5556073:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5551796-5551974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5545883-5545999:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5545441-5545548:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5545012-5545174:-1:exon

vsig10
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: vsig10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5593949..5646485)
location: region:5593949-5646485:-1
so has part: feature:5593949-5646485:-1:exon
subclass of: SO_0000010

116987243
type: Gene
SIO_000068: ncbigene

position:5593949:-1
position: 5593949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5646485:-1
position: 5646485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5593949-5646485:-1:exon

vsig10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: vsig10
product: V-set and immunoglobulin domain containing 10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_033043116.1
SIO_010081: vsig10
subclass of: SO_0000673
so part of: vsig10
location: complement(join(5593949..5594613,5604478..5604544,5618653..5618789,5627006..5627018,5629851..5629958,5630060..5630344,5633768..5634049,5636350..5636634,5646272..5646485))
location: region:5593949-5646485:-1
so has part: feature:5646272-5646485:-1:exon
so has part: feature:5636350-5636634:-1:exon
so has part: feature:5633768-5634049:-1:exon
so has part: feature:5630060-5630344:-1:exon
so has part: feature:5629851-5629958:-1:exon
so has part: feature:5627006-5627018:-1:exon
so has part: feature:5618653-5618789:-1:exon
so has part: feature:5604478-5604544:-1:exon
so has part: feature:5593949-5594613:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5646272-5646485:-1:exon

position:5646272:-1
position: 5646272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5636350-5636634:-1:exon

position:5636350:-1
position: 5636350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5636634:-1
position: 5636634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5633768-5634049:-1:exon

position:5633768:-1
position: 5633768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5634049:-1
position: 5634049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5630060-5630344:-1:exon

position:5630060:-1
position: 5630060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5630344:-1
position: 5630344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5629851-5629958:-1:exon

position:5629851:-1
position: 5629851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5629958:-1
position: 5629958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5627006-5627018:-1:exon

position:5627006:-1
position: 5627006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5627018:-1
position: 5627018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5618653-5618789:-1:exon

position:5618653:-1
position: 5618653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5618789:-1
position: 5618789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5604478-5604544:-1:exon

position:5604478:-1
position: 5604478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5604544:-1
position: 5604544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5593949-5594613:-1:exon

position:5594613:-1
position: 5594613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

vsig10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: vsig10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-set and immunoglobulin domain-containing protein 10
translation: MGPGSTGRGRHLPFVAVLGLTLYALLGAVDAEEFTVTITPGETLPNGTIYVIKHSKVSFNCSRRSQQKSNISWNYIGPDSRQETFAKVEGTYLEFTLFNVDSDNQGNYTCSTNENVTKEVLVYHPPEGPPLCHAESSDNYVNLFCSWTEGYPHPTFVWSNATGNFGSGDQTHGQTGLNDTMVLQVKGSETYDGQIFKCVGSHVVYEQRMEPSCSLLLKAPLPETQPLVTGFEGKNITLTCRAKEGNPPPKLTWIRNNKTEIFTNKKYIVLQEGITSLLTIQRSLKAQDEGSYICKCENPLGIKEMEIWVSFNNKNISGLVGVIAVLALLCIAAILGIFLYRHRNLFVTRRRFWQSGSNVFTLVDSEEEEEFADEGSSGITSVVNHQSAEPMNGHVFVEDNPPKIYNDRLPSEKRNETDA
SIO_010081: vsig10
subclass of: SO_0000673
so part of: vsig10
location: complement(join(5604480..5604544,5618653..5618789,5627006..5627018,5629851..5629958,5630060..5630344,5633768..5634049,5636350..5636634,5646272..5646356))
location: region:5604480-5646356:-1
so has part: feature:5646272-5646356:-1:exon
so has part: feature:5636350-5636634:-1:exon
so has part: feature:5633768-5634049:-1:exon
so has part: feature:5630060-5630344:-1:exon
so has part: feature:5629851-5629958:-1:exon
so has part: feature:5627006-5627018:-1:exon
so has part: feature:5618653-5618789:-1:exon
so has part: feature:5604480-5604544:-1:exon

XP_032899007.1
type: Protein
SIO_000068: ncbiprotein

position:5604480:-1
position: 5604480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5646356:-1
position: 5646356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5646272-5646356:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5636350-5636634:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5633768-5634049:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5630060-5630344:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5629851-5629958:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5627006-5627018:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5618653-5618789:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5604480-5604544:-1:exon

fbxw8
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: fbxw8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5676021..5858612)
location: region:5676021-5858612:-1
so has part: feature:5676021-5858612:-1:exon
subclass of: SO_0000010

116987244
type: Gene
SIO_000068: ncbigene

position:5676021:-1
position: 5676021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5858612:-1
position: 5858612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5676021-5858612:-1:exon

fbxw8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: fbxw8
product: F-box and WD repeat domain containing 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_033043117.1
SIO_010081: fbxw8
subclass of: SO_0000673
so part of: fbxw8
location: complement(join(5676021..5682596,5683505..5683621,5684894..5685067,5710734..5710861,5751177..5751395,5761216..5761412,5792680..5792837,5816567..5816655,5832821..5832985,5833622..5833726,5858099..5858612))
location: region:5676021-5858612:-1
so has part: feature:5858099-5858612:-1:exon
so has part: feature:5833622-5833726:-1:exon
so has part: feature:5832821-5832985:-1:exon
so has part: feature:5816567-5816655:-1:exon
so has part: feature:5792680-5792837:-1:exon
so has part: feature:5761216-5761412:-1:exon
so has part: feature:5751177-5751395:-1:exon
so has part: feature:5710734-5710861:-1:exon
so has part: feature:5684894-5685067:-1:exon
so has part: feature:5683505-5683621:-1:exon
so has part: feature:5676021-5682596:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5858099-5858612:-1:exon

position:5858099:-1
position: 5858099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5833622-5833726:-1:exon

position:5833622:-1
position: 5833622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5833726:-1
position: 5833726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5832821-5832985:-1:exon

position:5832821:-1
position: 5832821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5832985:-1
position: 5832985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5816567-5816655:-1:exon

position:5816567:-1
position: 5816567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5816655:-1
position: 5816655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5792680-5792837:-1:exon

position:5792680:-1
position: 5792680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5792837:-1
position: 5792837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5761216-5761412:-1:exon

position:5761216:-1
position: 5761216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5761412:-1
position: 5761412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5751177-5751395:-1:exon

position:5751177:-1
position: 5751177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5751395:-1
position: 5751395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5710734-5710861:-1:exon

position:5710734:-1
position: 5710734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5710861:-1
position: 5710861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5684894-5685067:-1:exon

position:5684894:-1
position: 5684894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5685067:-1
position: 5685067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5683505-5683621:-1:exon

position:5683505:-1
position: 5683505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5683621:-1
position: 5683621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5676021-5682596:-1:exon

position:5682596:-1
position: 5682596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

fbxw8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: fbxw8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 8
translation: MGDKDLQEFRQQWEEEISGRDCSNRGKGSSWEERSSKRRRRQEGPGPGCHGDGESLGPGESPGSESDPPPANYLRLAVSLLEGRTSPLRDRIQSAGRRRGAAKPGEGGWSPAGRIAQGPGGGQRESLLDQLISDLNEINEIPFFDIDLPYELALRIFAYLGRTELGRCAQVSKTWRVIAEDEVLWYKHCLKEGYETKADIGDFIGWKAVLRDSLKKEQTLQTNWKNRIGAASQLHYDVGGILCDVHSCNEMVVSGYTSGDVRMWDISTWDSSALYLETSRSSAELGLQPHVSFVRINSTIAVAAYKGGAVDVWSTVLGREPIHHYQHNQDIQAIAVAIDSAAVATSSCYQVRLESSDQRGYWQTACQFELQKLVGSLQFVPNGLNIDGNETLLAAAEDTVYLLKPETEPKVLHSIYGNTVTCLEVSSNRVACGVRNVGWIMSDGNKVHIYCLQTAQPLSTLGNALGDFTCVNLRDSPPYLAVTGNKDRKVRVYDLRTSKAVISLYGHQLGVSCVQMDDWKIVSGGEEGLVCVWEQRMGTKLWEMHSRHPVRHLRFSAHTLITANIPNEKCPRGASIMDDDLTAHRRHRGIIYVYDFSVNKSAPVLPICCSSYDEDVGYNYNIALSMPYDRIR
SIO_010081: fbxw8
subclass of: SO_0000673
so part of: fbxw8
location: complement(join(5682455..5682596,5683505..5683621,5684894..5685067,5710734..5710861,5751177..5751395,5761216..5761412,5792680..5792837,5816567..5816655,5832821..5832985,5833622..5833726,5858099..5858503))
location: region:5682455-5858503:-1
so has part: feature:5858099-5858503:-1:exon
so has part: feature:5833622-5833726:-1:exon
so has part: feature:5832821-5832985:-1:exon
so has part: feature:5816567-5816655:-1:exon
so has part: feature:5792680-5792837:-1:exon
so has part: feature:5761216-5761412:-1:exon
so has part: feature:5751177-5751395:-1:exon
so has part: feature:5710734-5710861:-1:exon
so has part: feature:5684894-5685067:-1:exon
so has part: feature:5683505-5683621:-1:exon
so has part: feature:5682455-5682596:-1:exon

XP_032899008.1
type: Protein
SIO_000068: ncbiprotein

position:5682455:-1
position: 5682455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5858503:-1
position: 5858503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5858099-5858503:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5833622-5833726:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5832821-5832985:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5816567-5816655:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5792680-5792837:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5761216-5761412:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5751177-5751395:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5710734-5710861:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5684894-5685067:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5683505-5683621:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5682455-5682596:-1:exon

LOC116987247
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987247
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5857731..5885995
location: region:5857731-5885995:1
so has part: feature:5857731-5885995:1:exon
subclass of: SO_0000011

116987247
type: Gene
SIO_000068: ncbigene

position:5857731:1
position: 5857731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5885995:1
position: 5885995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5857731-5885995:1:exon

LOC116987247
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987247
product: uncharacterized LOC116987247
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004415674.1
SIO_010081: LOC116987247
subclass of: SO_0000673
so part of: LOC116987247
location: join(5857731..5858012,5878197..5878246,5885931..5885995)
location: region:5857731-5885995:1
so has part: feature:5857731-5858012:1:exon
so has part: feature:5878197-5878246:1:exon
so has part: feature:5885931-5885995:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5857731-5858012:1:exon

position:5858012:1
position: 5858012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5878197-5878246:1:exon

position:5878197:1
position: 5878197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5878246:1
position: 5878246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5885931-5885995:1:exon

position:5885931:1
position: 5885931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

rnft2
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: rnft2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5885857..5935395)
location: region:5885857-5935395:-1
so has part: feature:5885857-5935395:-1:exon
subclass of: SO_0000010

116987245
type: Gene
SIO_000068: ncbigene

position:5885857:-1
position: 5885857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5935395:-1
position: 5935395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5885857-5935395:-1:exon

rnft2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rnft2
product: ring finger protein, transmembrane 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043121.1
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5885857..5886848,5887874..5887975,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934848..5934929,5935166..5935395))
location: region:5885857-5935395:-1
so has part: feature:5935166-5935395:-1:exon
so has part: feature:5934848-5934929:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5885857-5886848:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5935166-5935395:-1:exon

position:5935166:-1
position: 5935166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5934848-5934929:-1:exon

position:5934848:-1
position: 5934848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5934929:-1
position: 5934929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5929555-5930033:-1:exon

position:5929555:-1
position: 5929555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5930033:-1
position: 5930033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5925629-5925705:-1:exon

position:5925629:-1
position: 5925629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5925705:-1
position: 5925705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5922975-5923075:-1:exon

position:5922975:-1
position: 5922975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5923075:-1
position: 5923075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5915326-5915479:-1:exon

position:5915326:-1
position: 5915326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5915479:-1
position: 5915479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5887874-5887975:-1:exon

position:5887874:-1
position: 5887874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5887975:-1
position: 5887975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5885857-5886848:-1:exon

position:5886848:-1
position: 5886848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

rnft2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rnft2
product: ring finger protein, transmembrane 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043119.1
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5885857..5886848,5887874..5887975,5889816..5889881,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934848..5934929,5935166..5935395))
location: region:5885857-5935395:-1
so has part: feature:5935166-5935395:-1:exon
so has part: feature:5934848-5934929:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5889816-5889881:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5885857-5886848:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5935166-5935395:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5934848-5934929:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5929555-5930033:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5889816-5889881:-1:exon

position:5889816:-1
position: 5889816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5889881:-1
position: 5889881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5885857-5886848:-1:exon

rnft2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rnft2
product: ring finger protein, transmembrane 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_033043118.1
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5885857..5886848,5887874..5887975,5889816..5889881,5890518..5890667,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934848..5934929,5935166..5935395))
location: region:5885857-5935395:-1
so has part: feature:5935166-5935395:-1:exon
so has part: feature:5934848-5934929:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5890518-5890667:-1:exon
so has part: feature:5889816-5889881:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5885857-5886848:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5935166-5935395:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5934848-5934929:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5929555-5930033:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5890518-5890667:-1:exon

position:5890518:-1
position: 5890518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5890667:-1
position: 5890667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5889816-5889881:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5885857-5886848:-1:exon

rnft2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rnft2
product: ring finger protein, transmembrane 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033043120.1
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5885857..5886848,5887874..5887975,5889816..5889881,5890518..5890667,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934314..5934378))
location: region:5885857-5934378:-1
so has part: feature:5934314-5934378:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5890518-5890667:-1:exon
so has part: feature:5889816-5889881:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5885857-5886848:-1:exon

position:5934378:-1
position: 5934378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5934314-5934378:-1:exon

position:5934314:-1
position: 5934314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5929555-5930033:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5890518-5890667:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5889816-5889881:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5885857-5886848:-1:exon

rnft2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rnft2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger and transmembrane domain-containing protein 2 isoform X4
translation: MLRKYLFFQFTTDWKKMQRRHSSNTDNVPPERLRSQTVGSETSVDENGVFEGLKPESPSPQQMFAGLTGLQAGPISAASFQSGLVLGSSLGASVGTGDVFIQMTPQEEGAIRTENMQYHHRHRHHHYHHSHHRSSLLHVSGDRHGNVEDGSDEPGTPAPALSELKAAIAWLQKGLPFILILLAKVCFQHKLGIAVCIGMASTFAYANLTVKHQVSLREKRSVLTALWILVFLIGNTVFLYYTFSTQELYKSLIFLKTSVESMDFFDLLWIAGITDFVLKYITIGFKCLVLILPRIILAFKTRSCGVRATSQQCSEAGEICPICQAEFREPVMLVCQHVFCDECACLWFDRERSCPLCRTSVTETVRCWKDGTTSAHFQVY
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5886714..5886848,5887874..5887975,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934848..5934929,5935166..5935178))
location: region:5886714-5935178:-1
so has part: feature:5935166-5935178:-1:exon
so has part: feature:5934848-5934929:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5886714-5886848:-1:exon

XP_032899012.1
type: Protein
SIO_000068: ncbiprotein

position:5886714:-1
position: 5886714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5935178:-1
position: 5935178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5935166-5935178:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5934848-5934929:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5929555-5930033:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5886714-5886848:-1:exon

rnft2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rnft2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger and transmembrane domain-containing protein 2 isoform X2
translation: MLRKYLFFQFTTDWKKMQRRHSSNTDNVPPERLRSQTVGSETSVDENGVFEGLKPESPSPQQMFAGLTGLQAGPISAASFQSGLVLGSSLGASVGTGDVFIQMTPQEEGAIRTENMQYHHRHRHHHYHHSHHRSSLLHVSGDRHGNVEDGSDEPGTPAPALSELKAAIAWLQKGLPFILILLAKVCFQHKLGIAVCIGMASTFAYANLTVKHQVSLREKRSVLTALWILVFLIGNTVFLYYTFSTQELYKSLIFLKTSVESMDFFDLLWIAGITDFVLKYITIGFKCLVLILPRIILAFKTRFLDVCGRIGGLRKALKILCKSQSCGVRATSQQCSEAGEICPICQAEFREPVMLVCQHVFCDECACLWFDRERSCPLCRTSVTETVRCWKDGTTSAHFQVY
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5886714..5886848,5887874..5887975,5889816..5889881,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934848..5934929,5935166..5935178))
location: region:5886714-5935178:-1
so has part: feature:5935166-5935178:-1:exon
so has part: feature:5934848-5934929:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5889816-5889881:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5886714-5886848:-1:exon

XP_032899010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5935166-5935178:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5934848-5934929:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5929555-5930033:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5889816-5889881:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5886714-5886848:-1:exon

rnft2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rnft2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger and transmembrane domain-containing protein 2 isoform X1
translation: MLRKYLFFQFTTDWKKMQRRHSSNTDNVPPERLRSQTVGSETSVDENGVFEGLKPESPSPQQMFAGLTGLQAGPISAASFQSGLVLGSSLGASVGTGDVFIQMTPQEEGAIRTENMQYHHRHRHHHYHHSHHRSSLLHVSGDRHGNVEDGSDEPGTPAPALSELKAAIAWLQKGLPFILILLAKVCFQHKLGIAVCIGMASTFAYANLTVKHQVSLREKRSVLTALWILVFLIGNTVFLYYTFSTQELYKSLIFLKTSVESMDFFDLLWIAGITDFVLKYITIGFKCLVLILPRIILAFKTRGSLYLLIEEVSQLLRSLIPIQLWYKCIMEGESTNSYLLEGTLIVLYSLCKFLDVCGRIGGLRKALKILCKSQSCGVRATSQQCSEAGEICPICQAEFREPVMLVCQHVFCDECACLWFDRERSCPLCRTSVTETVRCWKDGTTSAHFQVY
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5886714..5886848,5887874..5887975,5889816..5889881,5890518..5890667,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5930033,5934848..5934929,5935166..5935178))
location: region:5886714-5935178:-1
so has part: feature:5935166-5935178:-1:exon
so has part: feature:5934848-5934929:-1:exon
so has part: feature:5929555-5930033:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5890518-5890667:-1:exon
so has part: feature:5889816-5889881:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5886714-5886848:-1:exon

XP_032899009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5935166-5935178:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5934848-5934929:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5929555-5930033:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5890518-5890667:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5889816-5889881:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5886714-5886848:-1:exon

rnft2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rnft2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger and transmembrane domain-containing protein 2 isoform X3
translation: MFAGLTGLQAGPISAASFQSGLVLGSSLGASVGTGDVFIQMTPQEEGAIRTENMQYHHRHRHHHYHHSHHRSSLLHVSGDRHGNVEDGSDEPGTPAPALSELKAAIAWLQKGLPFILILLAKVCFQHKLGIAVCIGMASTFAYANLTVKHQVSLREKRSVLTALWILVFLIGNTVFLYYTFSTQELYKSLIFLKTSVESMDFFDLLWIAGITDFVLKYITIGFKCLVLILPRIILAFKTRGSLYLLIEEVSQLLRSLIPIQLWYKCIMEGESTNSYLLEGTLIVLYSLCKFLDVCGRIGGLRKALKILCKSQSCGVRATSQQCSEAGEICPICQAEFREPVMLVCQHVFCDECACLWFDRERSCPLCRTSVTETVRCWKDGTTSAHFQVY
SIO_010081: rnft2
subclass of: SO_0000673
so part of: rnft2
location: complement(join(5886714..5886848,5887874..5887975,5889816..5889881,5890518..5890667,5915326..5915479,5922975..5923075,5925629..5925705,5929555..5929942))
location: region:5886714-5929942:-1
so has part: feature:5929555-5929942:-1:exon
so has part: feature:5925629-5925705:-1:exon
so has part: feature:5922975-5923075:-1:exon
so has part: feature:5915326-5915479:-1:exon
so has part: feature:5890518-5890667:-1:exon
so has part: feature:5889816-5889881:-1:exon
so has part: feature:5887874-5887975:-1:exon
so has part: feature:5886714-5886848:-1:exon

XP_032899011.1
type: Protein
SIO_000068: ncbiprotein

position:5929942:-1
position: 5929942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5929555-5929942:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5925629-5925705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5922975-5923075:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5915326-5915479:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5890518-5890667:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5889816-5889881:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5887874-5887975:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5886714-5886848:-1:exon

spring1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: spring1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5935989..5962276
location: region:5935989-5962276:1
so has part: feature:5935989-5962276:1:exon
subclass of: SO_0000010

116987248
type: Gene
SIO_000068: ncbigene

position:5935989:1
position: 5935989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5962276:1
position: 5962276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5935989-5962276:1:exon

spring1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: spring1
product: SREBF pathway regulator in golgi 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_033043122.1
SIO_010081: spring1
subclass of: SO_0000673
so part of: spring1
location: join(5935989..5936251,5956473..5956629,5956859..5957010,5959353..5959466,5960761..5962276)
location: region:5935989-5962276:1
so has part: feature:5935989-5936251:1:exon
so has part: feature:5956473-5956629:1:exon
so has part: feature:5956859-5957010:1:exon
so has part: feature:5959353-5959466:1:exon
so has part: feature:5960761-5962276:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5935989-5936251:1:exon

position:5936251:1
position: 5936251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5956473-5956629:1:exon

position:5956473:1
position: 5956473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5956629:1
position: 5956629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5956859-5957010:1:exon

position:5956859:1
position: 5956859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5957010:1
position: 5957010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5959353-5959466:1:exon

position:5959353:1
position: 5959353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5959466:1
position: 5959466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5960761-5962276:1:exon

position:5960761:1
position: 5960761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

spring1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: spring1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SREBP regulating gene protein
translation: MVHCISMVWRKVLRKRWVLALVFGLSLVYFLRSTLRQEERTVLDRNLLQLRGPERRIVWKVRFNLGNSSRQNEQCRNSVQGKLLITDEQGYVCERKNLLVNGCCSINAPSTKLHACDTCLPNDCCSVYEYCVSCCLQPNKQPLLEHFLNRAAEVFQNLFTAIEDHFELCLAKCRTSSQSVQHENNYRDPAAKYCYGEDLPELLPL
SIO_010081: spring1
subclass of: SO_0000673
so part of: spring1
location: join(5936141..5936251,5956473..5956629,5956859..5957010,5959353..5959466,5960761..5960844)
location: region:5936141-5960844:1
so has part: feature:5936141-5936251:1:exon
so has part: feature:5956473-5956629:1:exon
so has part: feature:5956859-5957010:1:exon
so has part: feature:5959353-5959466:1:exon
so has part: feature:5960761-5960844:1:exon

XP_032899013.1
type: Protein
SIO_000068: ncbiprotein

position:5936141:1
position: 5936141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5960844:1
position: 5960844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5936141-5936251:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5956473-5956629:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5956859-5957010:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5959353-5959466:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5960761-5960844:1:exon

LOC116987194
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987194
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6009669..6019398)
location: region:6009669-6019398:-1
so has part: feature:6009669-6019398:-1:exon
subclass of: SO_0000011

116987194
type: Gene
SIO_000068: ncbigene

position:6009669:-1
position: 6009669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6019398:-1
position: 6019398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6009669-6019398:-1:exon

LOC116987194
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987194
product: uncharacterized LOC116987194
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004415658.1
SIO_010081: LOC116987194
subclass of: SO_0000673
so part of: LOC116987194
location: complement(join(6009669..6009679,6015572..6015577,6019363..6019398))
location: region:6009669-6019398:-1
so has part: feature:6019363-6019398:-1:exon
so has part: feature:6015572-6015577:-1:exon
so has part: feature:6009669-6009679:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6019363-6019398:-1:exon

position:6019363:-1
position: 6019363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6015572-6015577:-1:exon

position:6015572:-1
position: 6015572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6015577:-1
position: 6015577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6009669-6009679:-1:exon

position:6009679:-1
position: 6009679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

med13l
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: med13l
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6728047..6941346
location: region:6728047-6941346:1
so has part: feature:6728047-6941346:1:exon
subclass of: SO_0000010

116987249
type: Gene
SIO_000068: ncbigene

position:6728047:1
position: 6728047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6941346:1
position: 6941346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6728047-6941346:1:exon

med13l
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: med13l
product: mediator complex subunit 13L, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_033043124.1
SIO_010081: med13l
subclass of: SO_0000673
so part of: med13l
location: join(6728047..6728201,6729354..6729591,6827812..6827896,6843950..6844033,6868160..6868305,6870127..6870318,6876426..6876611,6887371..6887533,6891402..6891503,6893345..6894076,6902454..6902691,6905231..6905333,6905474..6905595,6906810..6906900,6907178..6907398,6907552..6907757,6908561..6909495,6917176..6917352,6921157..6921380,6921587..6921779,6922600..6923065,6924359..6924578,6924827..6925015,6926041..6926264,6927255..6927397,6928406..6928564,6928705..6928872,6930402..6930544,6937713..6937886,6939630..6939736,6939837..6941346)
location: region:6728047-6941346:1
so has part: feature:6728047-6728201:1:exon
so has part: feature:6729354-6729591:1:exon
so has part: feature:6827812-6827896:1:exon
so has part: feature:6843950-6844033:1:exon
so has part: feature:6868160-6868305:1:exon
so has part: feature:6870127-6870318:1:exon
so has part: feature:6876426-6876611:1:exon
so has part: feature:6887371-6887533:1:exon
so has part: feature:6891402-6891503:1:exon
so has part: feature:6893345-6894076:1:exon
so has part: feature:6902454-6902691:1:exon
so has part: feature:6905231-6905333:1:exon
so has part: feature:6905474-6905595:1:exon
so has part: feature:6906810-6906900:1:exon
so has part: feature:6907178-6907398:1:exon
so has part: feature:6907552-6907757:1:exon
so has part: feature:6908561-6909495:1:exon
so has part: feature:6917176-6917352:1:exon
so has part: feature:6921157-6921380:1:exon
so has part: feature:6921587-6921779:1:exon
so has part: feature:6922600-6923065:1:exon
so has part: feature:6924359-6924578:1:exon
so has part: feature:6924827-6925015:1:exon
so has part: feature:6926041-6926264:1:exon
so has part: feature:6927255-6927397:1:exon
so has part: feature:6928406-6928564:1:exon
so has part: feature:6928705-6928872:1:exon
so has part: feature:6930402-6930544:1:exon
so has part: feature:6937713-6937886:1:exon
so has part: feature:6939630-6939736:1:exon
so has part: feature:6939837-6941346:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6728047-6728201:1:exon

position:6728201:1
position: 6728201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6729354-6729591:1:exon

position:6729354:1
position: 6729354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6729591:1
position: 6729591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6827812-6827896:1:exon

position:6827812:1
position: 6827812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6827896:1
position: 6827896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6843950-6844033:1:exon

position:6843950:1
position: 6843950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6844033:1
position: 6844033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6868160-6868305:1:exon

position:6868160:1
position: 6868160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6868305:1
position: 6868305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6870127-6870318:1:exon

position:6870127:1
position: 6870127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6870318:1
position: 6870318
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 7
SIO_000628: feature:6876426-6876611:1:exon

position:6876426:1
position: 6876426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6876611:1
position: 6876611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6887371-6887533:1:exon

position:6887371:1
position: 6887371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6887533:1
position: 6887533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6891402-6891503:1:exon

position:6891402:1
position: 6891402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6891503:1
position: 6891503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6893345-6894076:1:exon

position:6893345:1
position: 6893345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6894076:1
position: 6894076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6902454-6902691:1:exon

position:6902454:1
position: 6902454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6902691:1
position: 6902691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6905231-6905333:1:exon

position:6905231:1
position: 6905231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6905333:1
position: 6905333
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 13
SIO_000628: feature:6905474-6905595:1:exon

position:6905474:1
position: 6905474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6905595:1
position: 6905595
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 14
SIO_000628: feature:6906810-6906900:1:exon

position:6906810:1
position: 6906810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6906900:1
position: 6906900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6907178-6907398:1:exon

position:6907178:1
position: 6907178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6907398:1
position: 6907398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6907552-6907757:1:exon

position:6907552:1
position: 6907552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6907757:1
position: 6907757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6908561-6909495:1:exon

position:6908561:1
position: 6908561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6909495:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6917176-6917352:1:exon

position:6917176:1
position: 6917176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6917352:1
position: 6917352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6921157-6921380:1:exon

position:6921157:1
position: 6921157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6921380:1
position: 6921380
reference: sequence
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urn:…
SIO_000300: 20
SIO_000628: feature:6921587-6921779:1:exon

position:6921587:1
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reference: sequence
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position:6921779:1
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reference: sequence
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urn:…
SIO_000300: 21
SIO_000628: feature:6922600-6923065:1:exon

position:6922600:1
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reference: sequence
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position:6923065:1
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reference: sequence
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urn:…
SIO_000300: 22
SIO_000628: feature:6924359-6924578:1:exon

position:6924359:1
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reference: sequence
type: ForwardStrandPosition
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position:6924578:1
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reference: sequence
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urn:…
SIO_000300: 23
SIO_000628: feature:6924827-6925015:1:exon

position:6924827:1
position: 6924827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6925015:1
position: 6925015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:6926041-6926264:1:exon

position:6926041:1
position: 6926041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6926264:1
position: 6926264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:6927255-6927397:1:exon

position:6927255:1
position: 6927255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6927397:1
position: 6927397
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 26
SIO_000628: feature:6928406-6928564:1:exon

position:6928406:1
position: 6928406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6928564:1
position: 6928564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:6928705-6928872:1:exon

position:6928705:1
position: 6928705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6928872:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 28
SIO_000628: feature:6930402-6930544:1:exon

position:6930402:1
position: 6930402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6930544:1
position: 6930544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:6937713-6937886:1:exon

position:6937713:1
position: 6937713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6937886:1
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reference: sequence
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urn:…
SIO_000300: 30
SIO_000628: feature:6939630-6939736:1:exon

position:6939630:1
position: 6939630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6939736:1
position: 6939736
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 31
SIO_000628: feature:6939837-6941346:1:exon

position:6939837:1
position: 6939837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

med13l
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: med13l
product: mediator complex subunit 13L, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_033043126.1
SIO_010081: med13l
subclass of: SO_0000673
so part of: med13l
location: join(6728047..6728201,6729354..6729591,6827812..6827896,6843950..6844033,6868160..6868305,6870127..6870318,6876426..6876611,6887371..6887533,6893345..6894076,6902454..6902691,6905231..6905333,6905474..6905595,6906810..6906900,6907178..6907398,6907552..6907757,6908561..6909495,6917176..6917352,6921157..6921380,6921587..6921779,6922600..6923065,6924359..6924578,6924827..6925015,6926041..6926264,6927255..6927397,6928406..6928564,6928705..6928872,6930402..6930544,6937713..6937886,6939630..6939736,6939837..6941346)
location: region:6728047-6941346:1
so has part: feature:6728047-6728201:1:exon
so has part: feature:6729354-6729591:1:exon
so has part: feature:6827812-6827896:1:exon
so has part: feature:6843950-6844033:1:exon
so has part: feature:6868160-6868305:1:exon
so has part: feature:6870127-6870318:1:exon
so has part: feature:6876426-6876611:1:exon
so has part: feature:6887371-6887533:1:exon
so has part: feature:6893345-6894076:1:exon
so has part: feature:6902454-6902691:1:exon
so has part: feature:6905231-6905333:1:exon
so has part: feature:6905474-6905595:1:exon
so has part: feature:6906810-6906900:1:exon
so has part: feature:6907178-6907398:1:exon
so has part: feature:6907552-6907757:1:exon
so has part: feature:6908561-6909495:1:exon
so has part: feature:6917176-6917352:1:exon
so has part: feature:6921157-6921380:1:exon
so has part: feature:6921587-6921779:1:exon
so has part: feature:6922600-6923065:1:exon
so has part: feature:6924359-6924578:1:exon
so has part: feature:6924827-6925015:1:exon
so has part: feature:6926041-6926264:1:exon
so has part: feature:6927255-6927397:1:exon
so has part: feature:6928406-6928564:1:exon
so has part: feature:6928705-6928872:1:exon
so has part: feature:6930402-6930544:1:exon
so has part: feature:6937713-6937886:1:exon
so has part: feature:6939630-6939736:1:exon
so has part: feature:6939837-6941346:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6728047-6728201:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6729354-6729591:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6827812-6827896:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6843950-6844033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6868160-6868305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6870127-6870318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6876426-6876611:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6887371-6887533:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6893345-6894076:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6902454-6902691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6905231-6905333:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6905474-6905595:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6906810-6906900:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6907178-6907398:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6907552-6907757:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6908561-6909495:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6917176-6917352:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6921157-6921380:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6921587-6921779:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6922600-6923065:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6924359-6924578:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6924827-6925015:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6926041-6926264:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6927255-6927397:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6928406-6928564:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6928705-6928872:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6930402-6930544:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6937713-6937886:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6939630-6939736:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6939837-6941346:1:exon

med13l
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: med13l
product: mediator complex subunit 13L, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_033043125.1
SIO_010081: med13l
subclass of: SO_0000673
so part of: med13l
location: join(6728047..6728201,6729354..6729591,6827812..6827896,6843950..6844033,6868160..6868305,6870127..6870318,6876426..6876611,6887374..6887533,6891402..6891503,6893345..6894076,6902454..6902691,6905231..6905333,6905474..6905595,6906810..6906900,6907178..6907398,6907552..6907757,6908561..6909495,6917176..6917352,6921157..6921380,6921587..6921779,6922600..6923065,6924359..6924578,6924827..6925015,6926041..6926264,6927255..6927397,6928406..6928564,6928705..6928872,6930402..6930544,6937713..6937886,6939630..6939736,6939837..6941346)
location: region:6728047-6941346:1
so has part: feature:6728047-6728201:1:exon
so has part: feature:6729354-6729591:1:exon
so has part: feature:6827812-6827896:1:exon
so has part: feature:6843950-6844033:1:exon
so has part: feature:6868160-6868305:1:exon
so has part: feature:6870127-6870318:1:exon
so has part: feature:6876426-6876611:1:exon
so has part: feature:6887374-6887533:1:exon
so has part: feature:6891402-6891503:1:exon
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so has part: feature:6905474-6905595:1:exon
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so has part: feature:6907552-6907757:1:exon
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so has part: feature:6921157-6921380:1:exon
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so has part: feature:6922600-6923065:1:exon
so has part: feature:6924359-6924578:1:exon
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so has part: feature:6927255-6927397:1:exon
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so has part: feature:6928705-6928872:1:exon
so has part: feature:6930402-6930544:1:exon
so has part: feature:6937713-6937886:1:exon
so has part: feature:6939630-6939736:1:exon
so has part: feature:6939837-6941346:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6728047-6728201:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6729354-6729591:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6827812-6827896:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6843950-6844033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6868160-6868305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6870127-6870318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6876426-6876611:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6887374-6887533:1:exon

position:6887374:1
position: 6887374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6891402-6891503:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6893345-6894076:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6902454-6902691:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6905231-6905333:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6905474-6905595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6906810-6906900:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6907178-6907398:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6907552-6907757:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6908561-6909495:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6917176-6917352:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6921157-6921380:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6921587-6921779:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6922600-6923065:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6924359-6924578:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6924827-6925015:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6926041-6926264:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6927255-6927397:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6928406-6928564:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6928705-6928872:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6930402-6930544:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6937713-6937886:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6939630-6939736:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:6939837-6941346:1:exon

med13l
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: med13l
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mediator of RNA polymerase II transcription subunit 13-like isoform X1
translation: MTAANWVANGASLEDCHSNLFSLAELTGIKWRRYSFQGLGSCGPIISAPAQDDPILQTFIRCLQANLLCVWRRDVRPEAKELWIYWWGEEPNLVDIIHHELRVVDAGLWENGLTYECRTLLFKAIHNLLERCLMEKNFVRIGKWFVKPYEKNEKPVNKSEHLSCSFTFFLHGESNVCTSVEIAQHQPVYLVNEEHINVALSSATPFQVIISPFGLNGTLTGQTYKMSDPATRKLIEEWQYFYPMVLKKKEIKEEEEMDCDDDFPVAVEVIVGGVRMVYPSAFVLIPQGDIPIISNAATAGGQTNPTQGPGSVKDANSCGLPLTPPTSPEQTIIAGDAVVQSVVSHVSGQEGSVNSTSPKHCGKIPPKITNQMIQKVWKECNLNKTQLKRHSTGEKSEEEVASNAAAWDFTEPGQRVNCSCSRQKLQKQRGATGTNRPPSISQPGFNTGLPCASLPSSASSKHKTNEKQEKGDKQQKRPMTPFHHRPSLTDELCMEQDPTGQKLGLVGIDVPLEMQNNRKYGKPASGPPGNQSKPLNLNPMDSPHSPISPLPPTLSPQPMGPEAEGLEGAPVPINPLLYSNGMELQAIPSLDDKTGLLSQRLPPVPEVSETTLYNGITAQNLESSDKVSWQCYKTLSCAEREFRPPELHCDRCDSKMDNADGSALRRLLAQPHKRFKVSEERRQVHIQEINYLDPTRLMQQHSEGPGELNDPYTFVDGDIEYSFTSIKKFKLGTEKDASKKSQQNKLEDGFGTRETPPTHATQLPDGKDAMSIFSTAPKSESRQSPTGRTLPASLTRETDLVVSYNDLDNLFDNSDDEENGTCPTRSKPAHAGSEDRAVGKDVKTTGPYPPTVADLQRMFPTPPSLEQHPAFSPVMNYKDGVNSEMVAGINSVENPMNSISASQFTEFKMEVEDGLGSPKPEEITDFSFVHKPPKAKAFVGSSMFAPLKAVPSQCLAPLKIPDACIYRPSWAIPPKIEQLPVPSSASLIRDGYVNVPSVGSLTEDYIQMNTPQMSTPLAVSSTAPASNSGAGILPSPATPRFSVPTPRTPRTPRTPRGAGTASGQGSVKYDSADLCSPASTPSTTRPLNSVEPATIQSIPQAHSLYVTLILSDSVMNFFKDRNFDSCCICVCDTKGADVDLYIPDPTNEVQNPCTCGFSAVVNRRLGYNAGLFLEDEFDIFGRTSEVGQAAERRLILCRNSMEPQGCEGSKRPQDPTSNLLFLIQDQSTGPFTSLSSLDYISFDRSALQSANWNYDKLRADNSDSCTECFNALEQGRQYVDNPSGGRLDETLIRSRSLHPWPNSNVLDVSILSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKIGRGSYGAEESPEPLPIPTLLLGYDKDFLMISPFALPFWEKLLLEPYGSQRDVAYIVVCPENEALLTGAKNFFRDLSAVYETCRLGEHRPICKVLRDGIMRVGQSSAKKLADESVDDWFSQAWMNDESDNLAKLKLYAQVCRHHLAPYLATLQLDNSLLIPPKHQPTASSGTQGQATPGAGGPSSGTGGTSAPATTGTTVTSTISTGSNTATTGNSGVGSGSTGTCCTSTSTTTTTTTTTPVLHQTGTTSSTAGFSGTVGSASLPSGSSGTSAERPQGSTPSVSGDLDVQTSAQQQEVQESTTERERIGIPTEPESADSNAYPPAVVIYLVDPFTYSSDEETSFTSGSLLGLLRCYMEMLDNLPEHMRNAFTVRIVPCQYLLQPVKDDHSFYIQHLKSLAFSVYTQCRRPLPTQIHIKSLTGFGPASTIEMTLKHPERPHPIQVYSPPYILAPIKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELLETCILNIDVPNRSRRSKVPARKIGLQKLWEWCVGIMQMTSVPWRIVMGTLGRVGHGELKDWSILIGRRSLQSTSKQLKETCTMCGISAADSPTILSACLVALEPQGSFVVMPDAVTMGSVFGRGTALNLQTSQLNTPQDASCT…
SIO_010081: med13l
subclass of: SO_0000673
so part of: med13l
location: join(6728133..6728201,6729354..6729591,6827812..6827896,6843950..6844033,6868160..6868305,6870127..6870318,6876426..6876611,6887371..6887533,6891402..6891503,6893345..6894076,6902454..6902691,6905231..6905333,6905474..6905595,6906810..6906900,6907178..6907398,6907552..6907757,6908561..6909495,6917176..6917352,6921157..6921380,6921587..6921779,6922600..6923065,6924359..6924578,6924827..6925015,6926041..6926264,6927255..6927397,6928406..6928564,6928705..6928872,6930402..6930544,6937713..6937886,6939630..6939736,6939837..6939969)
location: region:6728133-6939969:1
so has part: feature:6728133-6728201:1:exon
so has part: feature:6729354-6729591:1:exon
so has part: feature:6827812-6827896:1:exon
so has part: feature:6843950-6844033:1:exon
so has part: feature:6868160-6868305:1:exon
so has part: feature:6870127-6870318:1:exon
so has part: feature:6876426-6876611:1:exon
so has part: feature:6887371-6887533:1:exon
so has part: feature:6891402-6891503:1:exon
so has part: feature:6893345-6894076:1:exon
so has part: feature:6902454-6902691:1:exon
so has part: feature:6905231-6905333:1:exon
so has part: feature:6905474-6905595:1:exon
so has part: feature:6906810-6906900:1:exon
so has part: feature:6907178-6907398:1:exon
so has part: feature:6907552-6907757:1:exon
so has part: feature:6908561-6909495:1:exon
so has part: feature:6917176-6917352:1:exon
so has part: feature:6921157-6921380:1:exon
so has part: feature:6921587-6921779:1:exon
so has part: feature:6922600-6923065:1:exon
so has part: feature:6924359-6924578:1:exon
so has part: feature:6924827-6925015:1:exon
so has part: feature:6926041-6926264:1:exon
so has part: feature:6927255-6927397:1:exon
so has part: feature:6928406-6928564:1:exon
so has part: feature:6928705-6928872:1:exon
so has part: feature:6930402-6930544:1:exon
so has part: feature:6937713-6937886:1:exon
so has part: feature:6939630-6939736:1:exon
so has part: feature:6939837-6939969:1:exon

XP_032899015.1
type: Protein
SIO_000068: ncbiprotein

position:6728133:1
position: 6728133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6939969:1
position: 6939969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6728133-6728201:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6729354-6729591:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6827812-6827896:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6843950-6844033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6868160-6868305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6870127-6870318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6876426-6876611:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6887371-6887533:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6891402-6891503:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6893345-6894076:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6902454-6902691:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6905231-6905333:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6905474-6905595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6906810-6906900:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6907178-6907398:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6907552-6907757:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6908561-6909495:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6917176-6917352:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6921157-6921380:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6921587-6921779:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6922600-6923065:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6924359-6924578:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6924827-6925015:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6926041-6926264:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6927255-6927397:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6928406-6928564:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6928705-6928872:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6930402-6930544:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6937713-6937886:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6939630-6939736:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:6939837-6939969:1:exon

med13l
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: med13l
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mediator of RNA polymerase II transcription subunit 13-like isoform X3
translation: MTAANWVANGASLEDCHSNLFSLAELTGIKWRRYSFQGLGSCGPIISAPAQDDPILQTFIRCLQANLLCVWRRDVRPEAKELWIYWWGEEPNLVDIIHHELRVVDAGLWENGLTYECRTLLFKAIHNLLERCLMEKNFVRIGKWFVKPYEKNEKPVNKSEHLSCSFTFFLHGESNVCTSVEIAQHQPVYLVNEEHINVALSSATPFQVIISPFGLNGTLTGQTYKMSDPATRKLIEEWQYFYPMVLKKKEIKEEEEMDCDDDFPVAVEVIVGGVRMVYPSAFVLIPQGDIPIISNAATAGGQTNPTQGPGSVKDANSCGLPLTPPTSPEQTIIAGDAVVQSVVSHVSGQEGSVNSTSPKHCGKIPPKITNQMIQKVWKECNLNKTQLKQKLQKQRGATGTNRPPSISQPGFNTGLPCASLPSSASSKHKTNEKQEKGDKQQKRPMTPFHHRPSLTDELCMEQDPTGQKLGLVGIDVPLEMQNNRKYGKPASGPPGNQSKPLNLNPMDSPHSPISPLPPTLSPQPMGPEAEGLEGAPVPINPLLYSNGMELQAIPSLDDKTGLLSQRLPPVPEVSETTLYNGITAQNLESSDKVSWQCYKTLSCAEREFRPPELHCDRCDSKMDNADGSALRRLLAQPHKRFKVSEERRQVHIQEINYLDPTRLMQQHSEGPGELNDPYTFVDGDIEYSFTSIKKFKLGTEKDASKKSQQNKLEDGFGTRETPPTHATQLPDGKDAMSIFSTAPKSESRQSPTGRTLPASLTRETDLVVSYNDLDNLFDNSDDEENGTCPTRSKPAHAGSEDRAVGKDVKTTGPYPPTVADLQRMFPTPPSLEQHPAFSPVMNYKDGVNSEMVAGINSVENPMNSISASQFTEFKMEVEDGLGSPKPEEITDFSFVHKPPKAKAFVGSSMFAPLKAVPSQCLAPLKIPDACIYRPSWAIPPKIEQLPVPSSASLIRDGYVNVPSVGSLTEDYIQMNTPQMSTPLAVSSTAPASNSGAGILPSPATPRFSVPTPRTPRTPRTPRGAGTASGQGSVKYDSADLCSPASTPSTTRPLNSVEPATIQSIPQAHSLYVTLILSDSVMNFFKDRNFDSCCICVCDTKGADVDLYIPDPTNEVQNPCTCGFSAVVNRRLGYNAGLFLEDEFDIFGRTSEVGQAAERRLILCRNSMEPQGCEGSKRPQDPTSNLLFLIQDQSTGPFTSLSSLDYISFDRSALQSANWNYDKLRADNSDSCTECFNALEQGRQYVDNPSGGRLDETLIRSRSLHPWPNSNVLDVSILSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKIGRGSYGAEESPEPLPIPTLLLGYDKDFLMISPFALPFWEKLLLEPYGSQRDVAYIVVCPENEALLTGAKNFFRDLSAVYETCRLGEHRPICKVLRDGIMRVGQSSAKKLADESVDDWFSQAWMNDESDNLAKLKLYAQVCRHHLAPYLATLQLDNSLLIPPKHQPTASSGTQGQATPGAGGPSSGTGGTSAPATTGTTVTSTISTGSNTATTGNSGVGSGSTGTCCTSTSTTTTTTTTTPVLHQTGTTSSTAGFSGTVGSASLPSGSSGTSAERPQGSTPSVSGDLDVQTSAQQQEVQESTTERERIGIPTEPESADSNAYPPAVVIYLVDPFTYSSDEETSFTSGSLLGLLRCYMEMLDNLPEHMRNAFTVRIVPCQYLLQPVKDDHSFYIQHLKSLAFSVYTQCRRPLPTQIHIKSLTGFGPASTIEMTLKHPERPHPIQVYSPPYILAPIKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELLETCILNIDVPNRSRRSKVPARKIGLQKLWEWCVGIMQMTSVPWRIVMGTLGRVGHGELKDWSILIGRRSLQSTSKQLKETCTMCGISAADSPTILSACLVALEPQGSFVVMPDAVTMGSVFGRGTALNLQTSQLNTPQDASCTHILVFPTSAATVVANTEALEGLGNQDGIGILDED…
SIO_010081: med13l
subclass of: SO_0000673
so part of: med13l
location: join(6728133..6728201,6729354..6729591,6827812..6827896,6843950..6844033,6868160..6868305,6870127..6870318,6876426..6876611,6887371..6887533,6893345..6894076,6902454..6902691,6905231..6905333,6905474..6905595,6906810..6906900,6907178..6907398,6907552..6907757,6908561..6909495,6917176..6917352,6921157..6921380,6921587..6921779,6922600..6923065,6924359..6924578,6924827..6925015,6926041..6926264,6927255..6927397,6928406..6928564,6928705..6928872,6930402..6930544,6937713..6937886,6939630..6939736,6939837..6939969)
location: region:6728133-6939969:1
so has part: feature:6728133-6728201:1:exon
so has part: feature:6729354-6729591:1:exon
so has part: feature:6827812-6827896:1:exon
so has part: feature:6843950-6844033:1:exon
so has part: feature:6868160-6868305:1:exon
so has part: feature:6870127-6870318:1:exon
so has part: feature:6876426-6876611:1:exon
so has part: feature:6887371-6887533:1:exon
so has part: feature:6893345-6894076:1:exon
so has part: feature:6902454-6902691:1:exon
so has part: feature:6905231-6905333:1:exon
so has part: feature:6905474-6905595:1:exon
so has part: feature:6906810-6906900:1:exon
so has part: feature:6907178-6907398:1:exon
so has part: feature:6907552-6907757:1:exon
so has part: feature:6908561-6909495:1:exon
so has part: feature:6917176-6917352:1:exon
so has part: feature:6921157-6921380:1:exon
so has part: feature:6921587-6921779:1:exon
so has part: feature:6922600-6923065:1:exon
so has part: feature:6924359-6924578:1:exon
so has part: feature:6924827-6925015:1:exon
so has part: feature:6926041-6926264:1:exon
so has part: feature:6927255-6927397:1:exon
so has part: feature:6928406-6928564:1:exon
so has part: feature:6928705-6928872:1:exon
so has part: feature:6930402-6930544:1:exon
so has part: feature:6937713-6937886:1:exon
so has part: feature:6939630-6939736:1:exon
so has part: feature:6939837-6939969:1:exon

XP_032899017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6728133-6728201:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6729354-6729591:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6827812-6827896:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6843950-6844033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6868160-6868305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6870127-6870318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6876426-6876611:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6887371-6887533:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6893345-6894076:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6902454-6902691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6905231-6905333:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6905474-6905595:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6906810-6906900:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6907178-6907398:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6907552-6907757:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6908561-6909495:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6917176-6917352:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6921157-6921380:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6921587-6921779:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6922600-6923065:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6924359-6924578:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6924827-6925015:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6926041-6926264:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6927255-6927397:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6928406-6928564:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6928705-6928872:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6930402-6930544:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6937713-6937886:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6939630-6939736:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6939837-6939969:1:exon

med13l
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: med13l
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mediator of RNA polymerase II transcription subunit 13-like isoform X2
translation: MTAANWVANGASLEDCHSNLFSLAELTGIKWRRYSFQGLGSCGPIISAPAQDDPILQTFIRCLQANLLCVWRRDVRPEAKELWIYWWGEEPNLVDIIHHELRVVDAGLWENGLTYECRTLLFKAIHNLLERCLMEKNFVRIGKWFVKPYEKNEKPVNKSEHLSCSFTFFLHGESNVCTSVEIAQHQPVYLVNEEHINVALSSATPFQVIISPFGLNGTLTGQTYKMSDPATRKLIEEWQYFYPMVLKKKEIKEEEEMDCDDDFPVAVEVIVGGVRMVYPSAFVLIPQGDIPIISNAATAGGQTNPTQGPGSVKDANSCGLPLTPPTSPEQTIIGDAVVQSVVSHVSGQEGSVNSTSPKHCGKIPPKITNQMIQKVWKECNLNKTQLKRHSTGEKSEEEVASNAAAWDFTEPGQRVNCSCSRQKLQKQRGATGTNRPPSISQPGFNTGLPCASLPSSASSKHKTNEKQEKGDKQQKRPMTPFHHRPSLTDELCMEQDPTGQKLGLVGIDVPLEMQNNRKYGKPASGPPGNQSKPLNLNPMDSPHSPISPLPPTLSPQPMGPEAEGLEGAPVPINPLLYSNGMELQAIPSLDDKTGLLSQRLPPVPEVSETTLYNGITAQNLESSDKVSWQCYKTLSCAEREFRPPELHCDRCDSKMDNADGSALRRLLAQPHKRFKVSEERRQVHIQEINYLDPTRLMQQHSEGPGELNDPYTFVDGDIEYSFTSIKKFKLGTEKDASKKSQQNKLEDGFGTRETPPTHATQLPDGKDAMSIFSTAPKSESRQSPTGRTLPASLTRETDLVVSYNDLDNLFDNSDDEENGTCPTRSKPAHAGSEDRAVGKDVKTTGPYPPTVADLQRMFPTPPSLEQHPAFSPVMNYKDGVNSEMVAGINSVENPMNSISASQFTEFKMEVEDGLGSPKPEEITDFSFVHKPPKAKAFVGSSMFAPLKAVPSQCLAPLKIPDACIYRPSWAIPPKIEQLPVPSSASLIRDGYVNVPSVGSLTEDYIQMNTPQMSTPLAVSSTAPASNSGAGILPSPATPRFSVPTPRTPRTPRTPRGAGTASGQGSVKYDSADLCSPASTPSTTRPLNSVEPATIQSIPQAHSLYVTLILSDSVMNFFKDRNFDSCCICVCDTKGADVDLYIPDPTNEVQNPCTCGFSAVVNRRLGYNAGLFLEDEFDIFGRTSEVGQAAERRLILCRNSMEPQGCEGSKRPQDPTSNLLFLIQDQSTGPFTSLSSLDYISFDRSALQSANWNYDKLRADNSDSCTECFNALEQGRQYVDNPSGGRLDETLIRSRSLHPWPNSNVLDVSILSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKIGRGSYGAEESPEPLPIPTLLLGYDKDFLMISPFALPFWEKLLLEPYGSQRDVAYIVVCPENEALLTGAKNFFRDLSAVYETCRLGEHRPICKVLRDGIMRVGQSSAKKLADESVDDWFSQAWMNDESDNLAKLKLYAQVCRHHLAPYLATLQLDNSLLIPPKHQPTASSGTQGQATPGAGGPSSGTGGTSAPATTGTTVTSTISTGSNTATTGNSGVGSGSTGTCCTSTSTTTTTTTTTPVLHQTGTTSSTAGFSGTVGSASLPSGSSGTSAERPQGSTPSVSGDLDVQTSAQQQEVQESTTERERIGIPTEPESADSNAYPPAVVIYLVDPFTYSSDEETSFTSGSLLGLLRCYMEMLDNLPEHMRNAFTVRIVPCQYLLQPVKDDHSFYIQHLKSLAFSVYTQCRRPLPTQIHIKSLTGFGPASTIEMTLKHPERPHPIQVYSPPYILAPIKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELLETCILNIDVPNRSRRSKVPARKIGLQKLWEWCVGIMQMTSVPWRIVMGTLGRVGHGELKDWSILIGRRSLQSTSKQLKETCTMCGISAADSPTILSACLVALEPQGSFVVMPDAVTMGSVFGRGTALNLQTSQLNTPQDASCTH…
SIO_010081: med13l
subclass of: SO_0000673
so part of: med13l
location: join(6728133..6728201,6729354..6729591,6827812..6827896,6843950..6844033,6868160..6868305,6870127..6870318,6876426..6876611,6887374..6887533,6891402..6891503,6893345..6894076,6902454..6902691,6905231..6905333,6905474..6905595,6906810..6906900,6907178..6907398,6907552..6907757,6908561..6909495,6917176..6917352,6921157..6921380,6921587..6921779,6922600..6923065,6924359..6924578,6924827..6925015,6926041..6926264,6927255..6927397,6928406..6928564,6928705..6928872,6930402..6930544,6937713..6937886,6939630..6939736,6939837..6939969)
location: region:6728133-6939969:1
so has part: feature:6728133-6728201:1:exon
so has part: feature:6729354-6729591:1:exon
so has part: feature:6827812-6827896:1:exon
so has part: feature:6843950-6844033:1:exon
so has part: feature:6868160-6868305:1:exon
so has part: feature:6870127-6870318:1:exon
so has part: feature:6876426-6876611:1:exon
so has part: feature:6887374-6887533:1:exon
so has part: feature:6891402-6891503:1:exon
so has part: feature:6893345-6894076:1:exon
so has part: feature:6902454-6902691:1:exon
so has part: feature:6905231-6905333:1:exon
so has part: feature:6905474-6905595:1:exon
so has part: feature:6906810-6906900:1:exon
so has part: feature:6907178-6907398:1:exon
so has part: feature:6907552-6907757:1:exon
so has part: feature:6908561-6909495:1:exon
so has part: feature:6917176-6917352:1:exon
so has part: feature:6921157-6921380:1:exon
so has part: feature:6921587-6921779:1:exon
so has part: feature:6922600-6923065:1:exon
so has part: feature:6924359-6924578:1:exon
so has part: feature:6924827-6925015:1:exon
so has part: feature:6926041-6926264:1:exon
so has part: feature:6927255-6927397:1:exon
so has part: feature:6928406-6928564:1:exon
so has part: feature:6928705-6928872:1:exon
so has part: feature:6930402-6930544:1:exon
so has part: feature:6937713-6937886:1:exon
so has part: feature:6939630-6939736:1:exon
so has part: feature:6939837-6939969:1:exon

XP_032899016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6728133-6728201:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6729354-6729591:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6827812-6827896:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6843950-6844033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6868160-6868305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6870127-6870318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6876426-6876611:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6887374-6887533:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6891402-6891503:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6893345-6894076:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6902454-6902691:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6905231-6905333:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6905474-6905595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6906810-6906900:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6907178-6907398:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6907552-6907757:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6908561-6909495:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6917176-6917352:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6921157-6921380:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6921587-6921779:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6922600-6923065:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6924359-6924578:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6924827-6925015:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6926041-6926264:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6927255-6927397:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6928406-6928564:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6928705-6928872:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6930402-6930544:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6937713-6937886:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6939630-6939736:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:6939837-6939969:1:exon

LOC116987250
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7151710..7156834)
location: region:7151710-7156834:-1
so has part: feature:7151710-7156834:-1:exon
subclass of: SO_0000011

116987250
type: Gene
SIO_000068: ncbigene

position:7151710:-1
position: 7151710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7156834:-1
position: 7156834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7151710-7156834:-1:exon

LOC116987250
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987250
product: uncharacterized LOC116987250
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_004415675.1
SIO_010081: LOC116987250
subclass of: SO_0000673
so part of: LOC116987250
location: complement(join(7151710..7153016,7156518..7156834))
location: region:7151710-7156834:-1
so has part: feature:7156518-7156834:-1:exon
so has part: feature:7151710-7153016:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7156518-7156834:-1:exon

position:7156518:-1
position: 7156518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7151710-7153016:-1:exon

position:7153016:-1
position: 7153016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987690
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987690
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(7442691..7442804)
location: region:7442691-7442804:-1
so has part: feature:7442691-7442804:-1:exon

116987690
type: Gene
SIO_000068: ncbigene

position:7442691:-1
position: 7442691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7442804:-1
position: 7442804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7442691-7442804:-1:exon

LOC116987690
type: Exon
subclass of: SO_0000147
RO_0002162: 386614
gene: LOC116987690
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116987690
subclass of: SO_0000673
so part of: LOC116987690
location: complement(7442691..7442804)
location: region:7442691-7442804:-1
so has part: feature:7442691-7442804:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7442691-7442804:-1:exon

LOC116987252
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987252
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8376772..8424433)
location: region:8376772-8424433:-1
so has part: feature:8376772-8424433:-1:exon
subclass of: SO_0000011

116987252
type: Gene
SIO_000068: ncbigene

position:8376772:-1
position: 8376772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8424433:-1
position: 8424433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8376772-8424433:-1:exon

LOC116987252
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987252
product: uncharacterized LOC116987252, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_004415677.1
SIO_010081: LOC116987252
subclass of: SO_0000673
so part of: LOC116987252
location: complement(join(8376772..8376786,8395258..8395920,8398570..8398685,8421676..8421784,8424260..8424433))
location: region:8376772-8424433:-1
so has part: feature:8424260-8424433:-1:exon
so has part: feature:8421676-8421784:-1:exon
so has part: feature:8398570-8398685:-1:exon
so has part: feature:8395258-8395920:-1:exon
so has part: feature:8376772-8376786:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8424260-8424433:-1:exon

position:8424260:-1
position: 8424260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8421676-8421784:-1:exon

position:8421676:-1
position: 8421676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8421784:-1
position: 8421784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8398570-8398685:-1:exon

position:8398570:-1
position: 8398570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8398685:-1
position: 8398685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8395258-8395920:-1:exon

position:8395258:-1
position: 8395258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8395920:-1
position: 8395920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8376772-8376786:-1:exon

position:8376786:-1
position: 8376786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987252
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987252
product: uncharacterized LOC116987252, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004415676.1
SIO_010081: LOC116987252
subclass of: SO_0000673
so part of: LOC116987252
location: complement(join(8393850..8395920,8398570..8398685,8421676..8421784,8424260..8424433))
location: region:8393850-8424433:-1
so has part: feature:8424260-8424433:-1:exon
so has part: feature:8421676-8421784:-1:exon
so has part: feature:8398570-8398685:-1:exon
so has part: feature:8393850-8395920:-1:exon

position:8393850:-1
position: 8393850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8424260-8424433:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8421676-8421784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8398570-8398685:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8393850-8395920:-1:exon

tbx3
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: tbx3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8425189..8433913
location: region:8425189-8433913:1
so has part: feature:8425189-8433913:1:exon
subclass of: SO_0000010

116987251
type: Gene
SIO_000068: ncbigene

position:8425189:1
position: 8425189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8433913:1
position: 8433913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8425189-8433913:1:exon

tbx3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tbx3
product: T-box transcription factor 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_033043127.1
SIO_010081: tbx3
subclass of: SO_0000673
so part of: tbx3
location: join(8425189..8425925,8427119..8427386,8428497..8428643,8430163..8430239,8430612..8430775,8431312..8431976,8432667..8433913)
location: region:8425189-8433913:1
so has part: feature:8425189-8425925:1:exon
so has part: feature:8427119-8427386:1:exon
so has part: feature:8428497-8428643:1:exon
so has part: feature:8430163-8430239:1:exon
so has part: feature:8430612-8430775:1:exon
so has part: feature:8431312-8431976:1:exon
so has part: feature:8432667-8433913:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8425189-8425925:1:exon

position:8425925:1
position: 8425925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8427119-8427386:1:exon

position:8427119:1
position: 8427119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8427386:1
position: 8427386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8428497-8428643:1:exon

position:8428497:1
position: 8428497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8428643:1
position: 8428643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8430163-8430239:1:exon

position:8430163:1
position: 8430163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8430239:1
position: 8430239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8430612-8430775:1:exon

position:8430612:1
position: 8430612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8430775:1
position: 8430775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8431312-8431976:1:exon

position:8431312:1
position: 8431312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8431976:1
position: 8431976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8432667-8433913:1:exon

position:8432667:1
position: 8432667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tbx3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tbx3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-box transcription factor TBX3
translation: MNLPMREPVIPGTSMAYHPFLPHRAPDFALSAVLGHQPSFFPALALQPSGAASLTLPGVLSKPIVDQLVSAAEAGLAVSAMGHQPSHLRPLKTLEPEEEVEDDPKVILEAKDLWDQFHKRGTEMVITKSGRRMFPPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRKQLAIQSLRVYEEHQKGSKENGTSDDSSNEQATFKCFAPSVSPAASTPGTANLKGALQSDGEESDMDTKDDPVEGETDSEKLSTTAEQRKDERSSVKPHLCPSDTGSRSRGHESARTDKSLADLQHSPTNTSSRTVAHNGEGSGIKSPVRDHQKGDGSIAVNKYAYSPLTVQTDGISHLNHGHLQNFAFSHNLSGQHFFSPFGAGHPLLLHPGQFAMGGAFPNMATGMGHLLASMSASTGGIGSLDPLATSQQGLPGGSAAAALPYHLQQHVLASQGLAMSPFGSLFPYPYTYMAAAAAASMPAGVPTSIASSLHRHPFLNAVRPRLRYNPYTFSMPGMDSSGLLTTAVSSMSTPAEAKVSSMATSPVSAGLDSGSELNSRSSTLSSGSISLSPKQCSEKETSSELQNIQRLVSGLESKQDRSTRSSSP
SIO_010081: tbx3
subclass of: SO_0000673
so part of: tbx3
location: join(8425534..8425925,8427119..8427386,8428497..8428643,8430163..8430239,8430612..8430775,8431312..8431976,8432667..8433128)
location: region:8425534-8433128:1
so has part: feature:8425534-8425925:1:exon
so has part: feature:8427119-8427386:1:exon
so has part: feature:8428497-8428643:1:exon
so has part: feature:8430163-8430239:1:exon
so has part: feature:8430612-8430775:1:exon
so has part: feature:8431312-8431976:1:exon
so has part: feature:8432667-8433128:1:exon

XP_032899018.1
type: Protein
SIO_000068: ncbiprotein

position:8425534:1
position: 8425534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8433128:1
position: 8433128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8425534-8425925:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8427119-8427386:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8428497-8428643:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8430163-8430239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8430612-8430775:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8431312-8431976:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8432667-8433128:1:exon

LOC116987253
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987253
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8436238..8437515)
location: region:8436238-8437515:-1
so has part: feature:8436238-8437515:-1:exon
subclass of: SO_0000011

116987253
type: Gene
SIO_000068: ncbigene

position:8436238:-1
position: 8436238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8437515:-1
position: 8437515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8436238-8437515:-1:exon

LOC116987253
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987253
product: uncharacterized LOC116987253
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_004415678.1
SIO_010081: LOC116987253
subclass of: SO_0000673
so part of: LOC116987253
location: complement(join(8436238..8436468,8436692..8437515))
location: region:8436238-8437515:-1
so has part: feature:8436692-8437515:-1:exon
so has part: feature:8436238-8436468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8436692-8437515:-1:exon

position:8436692:-1
position: 8436692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8436238-8436468:-1:exon

position:8436468:-1
position: 8436468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987195
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987195
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8481152..8495823
location: region:8481152-8495823:1
so has part: feature:8481152-8495823:1:exon
subclass of: SO_0000011

116987195
type: Gene
SIO_000068: ncbigene

position:8481152:1
position: 8481152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8495823:1
position: 8495823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8481152-8495823:1:exon

LOC116987195
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987195
product: uncharacterized LOC116987195
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004415659.1
SIO_010081: LOC116987195
subclass of: SO_0000673
so part of: LOC116987195
location: join(8481152..8481192,8494903..8494912,8495814..8495823)
location: region:8481152-8495823:1
so has part: feature:8481152-8481192:1:exon
so has part: feature:8494903-8494912:1:exon
so has part: feature:8495814-8495823:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8481152-8481192:1:exon

position:8481192:1
position: 8481192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8494903-8494912:1:exon

position:8494903:1
position: 8494903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8494912:1
position: 8494912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8495814-8495823:1:exon

position:8495814:1
position: 8495814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tbx5
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: tbx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8567245..8595846
location: region:8567245-8595846:1
so has part: feature:8567245-8595846:1:exon
subclass of: SO_0000010

116987254
type: Gene
SIO_000068: ncbigene

position:8567245:1
position: 8567245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8595846:1
position: 8595846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8567245-8595846:1:exon

tbx5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tbx5
product: T-box transcription factor 5, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_033043132.1
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8567245..8567411,8580470..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8595846)
location: region:8567245-8595846:1
so has part: feature:8567245-8567411:1:exon
so has part: feature:8580470-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8595846:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8567245-8567411:1:exon

position:8567411:1
position: 8567411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8580470-8580635:1:exon

position:8580470:1
position: 8580470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8580635:1
position: 8580635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

position:8580939:1
position: 8580939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8581033:1
position: 8581033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

position:8582469:1
position: 8582469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8582588:1
position: 8582588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

position:8583080:1
position: 8583080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8583227:1
position: 8583227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

position:8585152:1
position: 8585152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8585304:1
position: 8585304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

position:8589066:1
position: 8589066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8589157:1
position: 8589157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

position:8590270:1
position: 8590270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8590493:1
position: 8590493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8593293-8595846:1:exon

position:8593293:1
position: 8593293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tbx5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tbx5
product: T-box transcription factor 5, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_033043133.1
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8574155..8575690,8580470..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8595846)
location: region:8574155-8595846:1
so has part: feature:8574155-8575690:1:exon
so has part: feature:8580470-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8595846:1:exon

position:8574155:1
position: 8574155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8574155-8575690:1:exon

position:8575690:1
position: 8575690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8580470-8580635:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8593293-8595846:1:exon

tbx5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tbx5
product: T-box transcription factor 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_033043129.1
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8577486..8577999,8580388..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8595846)
location: region:8577486-8595846:1
so has part: feature:8577486-8577999:1:exon
so has part: feature:8580388-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8595846:1:exon

position:8577486:1
position: 8577486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8577486-8577999:1:exon

position:8577999:1
position: 8577999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8580388-8580635:1:exon

position:8580388:1
position: 8580388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8593293-8595846:1:exon

tbx5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tbx5
product: T-box transcription factor 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_033043130.1
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8577487..8577999,8580388..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593296..8595846)
location: region:8577487-8595846:1
so has part: feature:8577487-8577999:1:exon
so has part: feature:8580388-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593296-8595846:1:exon

position:8577487:1
position: 8577487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8577487-8577999:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580388-8580635:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8593296-8595846:1:exon

position:8593296:1
position: 8593296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tbx5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tbx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-box transcription factor TBX5 isoform X1
translation: MDGEVLKFHRVFVLRLSCQDAGGSGMSRCVWISAGWTGVQHLERTEGWFPTSLQSARSTGCARISYITHTAPTKSTLWVNCFPTRPLHAKFLVHSYHRSYDKALFFHPQNHSLRVRQPGSIWKSAIPLAISGLFSLGCVLCLTREDSDCEGLYQYSSIVDRPEEGTVPCDGRFALLTIKSQCLGFPASLARIVRRNMAETEEGFGLPASTRSDPEPKEHSSENKQDSLLGAANKPHSPQQATYSQQGMEGIKVYLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFAETSFIAVTSYQNHKITQLKIENNPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQRVGSAASQFSGEVRVLPVSNSLNSQYQCENGVSSSSQELLPPNPYSLSQEQSPLYHCNKRKAVEEDCPSTEHPFKKSFMESPPQDDDPFYRSPSYSQQQNLAPSYRTESAQRQACMYAGSTSGTDAGSSLDDISCNTWATVPSYSSCTVTAMQPMDRIPYQHFSAHFTSSPLMPRISGVTNHTSPQIGDTHMFQHQTSVSHQPIVRPCAPQAAIQSASNLQPSDYLYPHGMSRTLSPHQYHSVHGVGMVPEWTENS
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8577510..8577999,8580388..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8593879)
location: region:8577510-8593879:1
so has part: feature:8577510-8577999:1:exon
so has part: feature:8580388-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8593879:1:exon

XP_032899020.1
type: Protein
SIO_000068: ncbiprotein

position:8577510:1
position: 8577510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8593879:1
position: 8593879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8577510-8577999:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580388-8580635:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8593293-8593879:1:exon

tbx5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tbx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-box transcription factor TBX5 isoform X2
translation: MDGEVLKFHRVFVLRLSCQDAGGSGMSRCVWISAGWTGVQHLERTEGWFPTSLQSARSTGCARISYITHTAPTKSTLWVNCFPTRPLHAKFLVHSYHRSYDKALFFHPQNHSLRVRQPGSIWKSAIPLAISGLFSLGCVLCLTREDSDCEGLYQYSSIVDRPEEGTVPCDGRFALLTIKSQCLGFPASLARIVRRNMAETEEGFGLPASTRSDPEPKEHSSENKQDSLLGAANKPHSPQQATYSQQGMEGIKVYLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFAETSFIAVTSYQNHKITQLKIENNPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQRVGSAASQFSGEVRVLPVSNSLNSQYQCENGVSSSSQELLPPNPYSLSQEQSPLYHCNKRKVEEDCPSTEHPFKKSFMESPPQDDDPFYRSPSYSQQQNLAPSYRTESAQRQACMYAGSTSGTDAGSSLDDISCNTWATVPSYSSCTVTAMQPMDRIPYQHFSAHFTSSPLMPRISGVTNHTSPQIGDTHMFQHQTSVSHQPIVRPCAPQAAIQSASNLQPSDYLYPHGMSRTLSPHQYHSVHGVGMVPEWTENS
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8577510..8577999,8580388..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593296..8593879)
location: region:8577510-8593879:1
so has part: feature:8577510-8577999:1:exon
so has part: feature:8580388-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593296-8593879:1:exon

XP_032899021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8577510-8577999:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580388-8580635:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8593296-8593879:1:exon

tbx5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tbx5
product: T-box transcription factor 5, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_033043131.1
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8577891..8577999,8580470..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8595846)
location: region:8577891-8595846:1
so has part: feature:8577891-8577999:1:exon
so has part: feature:8580470-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8595846:1:exon

position:8577891:1
position: 8577891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8577891-8577999:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580470-8580635:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8593293-8595846:1:exon

tbx5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tbx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-box transcription factor TBX5 isoform X3
translation: MAETEEGFGLPASTRSDPEPKEHSSENKQDSLLGAANKPHSPQQATYSQQGMEGIKVYLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFAETSFIAVTSYQNHKITQLKIENNPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQRVGSAASQFSGEVRVLPVSNSLNSQYQCENGVSSSSQELLPPNPYSLSQEQSPLYHCNKRKAVEEDCPSTEHPFKKSFMESPPQDDDPFYRSPSYSQQQNLAPSYRTESAQRQACMYAGSTSGTDAGSSLDDISCNTWATVPSYSSCTVTAMQPMDRIPYQHFSAHFTSSPLMPRISGVTNHTSPQIGDTHMFQHQTSVSHQPIVRPCAPQAAIQSASNLQPSDYLYPHGMSRTLSPHQYHSVHGVGMVPEWTENS
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8580486..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8593879)
location: region:8580486-8593879:1
so has part: feature:8580486-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8593879:1:exon

XP_032899022.1
type: Protein
SIO_000068: ncbiprotein

position:8580486:1
position: 8580486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8580486-8580635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8593293-8593879:1:exon

tbx5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tbx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-box transcription factor TBX5 isoform X3
translation: MAETEEGFGLPASTRSDPEPKEHSSENKQDSLLGAANKPHSPQQATYSQQGMEGIKVYLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFAETSFIAVTSYQNHKITQLKIENNPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQRVGSAASQFSGEVRVLPVSNSLNSQYQCENGVSSSSQELLPPNPYSLSQEQSPLYHCNKRKAVEEDCPSTEHPFKKSFMESPPQDDDPFYRSPSYSQQQNLAPSYRTESAQRQACMYAGSTSGTDAGSSLDDISCNTWATVPSYSSCTVTAMQPMDRIPYQHFSAHFTSSPLMPRISGVTNHTSPQIGDTHMFQHQTSVSHQPIVRPCAPQAAIQSASNLQPSDYLYPHGMSRTLSPHQYHSVHGVGMVPEWTENS
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8580486..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8593879)
location: region:8580486-8593879:1
so has part: feature:8580486-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8593879:1:exon

XP_032899023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8580486-8580635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8593293-8593879:1:exon

tbx5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tbx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-box transcription factor TBX5 isoform X3
translation: MAETEEGFGLPASTRSDPEPKEHSSENKQDSLLGAANKPHSPQQATYSQQGMEGIKVYLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFAETSFIAVTSYQNHKITQLKIENNPFAKGFRGSDDMELHRMSRMQSKEYPVVPRSTVRQRVGSAASQFSGEVRVLPVSNSLNSQYQCENGVSSSSQELLPPNPYSLSQEQSPLYHCNKRKAVEEDCPSTEHPFKKSFMESPPQDDDPFYRSPSYSQQQNLAPSYRTESAQRQACMYAGSTSGTDAGSSLDDISCNTWATVPSYSSCTVTAMQPMDRIPYQHFSAHFTSSPLMPRISGVTNHTSPQIGDTHMFQHQTSVSHQPIVRPCAPQAAIQSASNLQPSDYLYPHGMSRTLSPHQYHSVHGVGMVPEWTENS
SIO_010081: tbx5
subclass of: SO_0000673
so part of: tbx5
location: join(8580486..8580635,8580939..8581033,8582469..8582588,8583080..8583227,8585152..8585304,8589066..8589157,8590270..8590493,8593293..8593879)
location: region:8580486-8593879:1
so has part: feature:8580486-8580635:1:exon
so has part: feature:8580939-8581033:1:exon
so has part: feature:8582469-8582588:1:exon
so has part: feature:8583080-8583227:1:exon
so has part: feature:8585152-8585304:1:exon
so has part: feature:8589066-8589157:1:exon
so has part: feature:8590270-8590493:1:exon
so has part: feature:8593293-8593879:1:exon

XP_032899024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8580486-8580635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8580939-8581033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8582469-8582588:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8583080-8583227:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8585152-8585304:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8589066-8589157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8590270-8590493:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8593293-8593879:1:exon

LOC116987693
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987693
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(8752084..8752197)
location: region:8752084-8752197:-1
so has part: feature:8752084-8752197:-1:exon

116987693
type: Gene
SIO_000068: ncbigene

position:8752084:-1
position: 8752084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8752197:-1
position: 8752197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8752084-8752197:-1:exon

LOC116987693
type: Exon
subclass of: SO_0000147
RO_0002162: 386614
gene: LOC116987693
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116987693
subclass of: SO_0000673
so part of: LOC116987693
location: complement(8752084..8752197)
location: region:8752084-8752197:-1
so has part: feature:8752084-8752197:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8752084-8752197:-1:exon

LOC116987196
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987196
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8892011..8893433)
location: region:8892011-8893433:-1
so has part: feature:8892011-8893433:-1:exon
subclass of: SO_0000011

116987196
type: Gene
SIO_000068: ncbigene

position:8892011:-1
position: 8892011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8893433:-1
position: 8893433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8892011-8893433:-1:exon

LOC116987196
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987196
product: uncharacterized LOC116987196
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004415660.1
SIO_010081: LOC116987196
subclass of: SO_0000673
so part of: LOC116987196
location: complement(join(8892011..8892271,8892496..8892818,8893374..8893433))
location: region:8892011-8893433:-1
so has part: feature:8893374-8893433:-1:exon
so has part: feature:8892496-8892818:-1:exon
so has part: feature:8892011-8892271:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8893374-8893433:-1:exon

position:8893374:-1
position: 8893374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8892496-8892818:-1:exon

position:8892496:-1
position: 8892496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8892818:-1
position: 8892818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8892011-8892271:-1:exon

position:8892271:-1
position: 8892271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

rbm19
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: rbm19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <9446327..9669177
location: region:9446327-9669177:1
so has part: feature:9446327-9669177:1:exon
subclass of: SO_0000010

116987128
type: Gene
SIO_000068: ncbigene

position:9446327:1
position: 9446327
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:9669177:1
position: 9669177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9446327-9669177:1:exon

rbm19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rbm19
product: RNA binding motif protein 19
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_033043004.1
SIO_010081: rbm19
subclass of: SO_0000673
so part of: rbm19
location: join(<9446327..9446402,9451993..9452064,9453388..9453588,9454789..9454919,9457500..9457621,9458183..9458279,9465641..9465751,9467394..9467594,9469533..9469617,9487305..9487429,9507820..9507880,9508758..9508837,9513789..9513844,9515805..9515918,9537558..9537663,9542088..9542208,9601525..9601616,9667674..9669177)
location: region:9446327-9669177:1
so has part: feature:9446327-9446402:1:exon
so has part: feature:9451993-9452064:1:exon
so has part: feature:9453388-9453588:1:exon
so has part: feature:9454789-9454919:1:exon
so has part: feature:9457500-9457621:1:exon
so has part: feature:9458183-9458279:1:exon
so has part: feature:9465641-9465751:1:exon
so has part: feature:9467394-9467594:1:exon
so has part: feature:9469533-9469617:1:exon
so has part: feature:9487305-9487429:1:exon
so has part: feature:9507820-9507880:1:exon
so has part: feature:9508758-9508837:1:exon
so has part: feature:9513789-9513844:1:exon
so has part: feature:9515805-9515918:1:exon
so has part: feature:9537558-9537663:1:exon
so has part: feature:9542088-9542208:1:exon
so has part: feature:9601525-9601616:1:exon
so has part: feature:9667674-9669177:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9446327-9446402:1:exon

position:9446402:1
position: 9446402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9451993-9452064:1:exon

position:9451993:1
position: 9451993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9452064:1
position: 9452064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9453388-9453588:1:exon

position:9453388:1
position: 9453388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9453588:1
position: 9453588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9454789-9454919:1:exon

position:9454789:1
position: 9454789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9454919:1
position: 9454919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9457500-9457621:1:exon

position:9457500:1
position: 9457500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9457621:1
position: 9457621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9458183-9458279:1:exon

position:9458183:1
position: 9458183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9458279:1
position: 9458279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9465641-9465751:1:exon

position:9465641:1
position: 9465641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9465751:1
position: 9465751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9467394-9467594:1:exon

position:9467394:1
position: 9467394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9467594:1
position: 9467594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9469533-9469617:1:exon

position:9469533:1
position: 9469533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9469617:1
position: 9469617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9487305-9487429:1:exon

position:9487305:1
position: 9487305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9487429:1
position: 9487429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:9507820-9507880:1:exon

position:9507820:1
position: 9507820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9507880:1
position: 9507880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:9508758-9508837:1:exon

position:9508758:1
position: 9508758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9508837:1
position: 9508837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:9513789-9513844:1:exon

position:9513789:1
position: 9513789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9513844:1
position: 9513844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:9515805-9515918:1:exon

position:9515805:1
position: 9515805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9515918:1
position: 9515918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:9537558-9537663:1:exon

position:9537558:1
position: 9537558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9537663:1
position: 9537663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:9542088-9542208:1:exon

position:9542088:1
position: 9542088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9542208:1
position: 9542208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:9601525-9601616:1:exon

position:9601525:1
position: 9601525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9601616:1
position: 9601616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:9667674-9669177:1:exon

position:9667674:1
position: 9667674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

rbm19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rbm19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable RNA-binding protein 19
translation: QVKEFFVPLKPVAIRIVRNANGNVTGYVFIDFQSEDDLEKALKRDREYMGRRYVELFRMDNTQKTKPVTTDNQKWLKREKKAGEVEEDVSESGRLFVRNLPYTCAEDDLEKVFSKYGPLSEIHFPIDNLTKTPKGFAFITFMIPEHAVRALAELDGDIFQGRMMHILPSMVKEEKDESDNILGSSAFKKNKAAQEKARSNSSHNWNTLFVGSNAVADAIAAKYNATKSQVLDHEGKGSVAVRMALGETQIVQETRQFLVDNGVSLDSFSQAAGPRSKTVILVKNIPADTQVGELENLFKKYGDVGRVLLPPAGVSAIVEFLEPTEAKQAFTKLAYSKFQHVPLYLEWAPMDVFSTPVAEKKQSDKDDQDVPATNENDSCEEEDECIPGCTLFVKNLNFSTAEESLKKAFSKCGSLKSCSISKKKSRTGTLLSMGYGFVEYTKPEYANKALKLLQHTMLDDHQLELKLSDRVTKSVNPARKLQKAKDQKASKILIRNIPFQAKVKEIRELFSTFGEIKSVRLPKKMGGTGTHRGFGFVEFLTKQEAKKAFNALCHSTHLYGRRLVLEWADSEDTLEELRRKTAEHYYDSPNKKKRVEILDEIMDDVEGKD
SIO_010081: rbm19
subclass of: SO_0000673
so part of: rbm19
location: join(<9446327..9446402,9451993..9452064,9453388..9453588,9454789..9454919,9457500..9457621,9458183..9458279,9465641..9465751,9467394..9467594,9469533..9469617,9487305..9487429,9507820..9507880,9508758..9508837,9513789..9513844,9515805..9515918,9537558..9537663,9542088..9542208,9601525..9601595)
location: region:9446327-9601595:1
so has part: feature:9446327-9446402:1:exon
so has part: feature:9451993-9452064:1:exon
so has part: feature:9453388-9453588:1:exon
so has part: feature:9454789-9454919:1:exon
so has part: feature:9457500-9457621:1:exon
so has part: feature:9458183-9458279:1:exon
so has part: feature:9465641-9465751:1:exon
so has part: feature:9467394-9467594:1:exon
so has part: feature:9469533-9469617:1:exon
so has part: feature:9487305-9487429:1:exon
so has part: feature:9507820-9507880:1:exon
so has part: feature:9508758-9508837:1:exon
so has part: feature:9513789-9513844:1:exon
so has part: feature:9515805-9515918:1:exon
so has part: feature:9537558-9537663:1:exon
so has part: feature:9542088-9542208:1:exon
so has part: feature:9601525-9601595:1:exon

XP_032898895.1
type: Protein
SIO_000068: ncbiprotein

position:9601595:1
position: 9601595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9446327-9446402:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9451993-9452064:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9453388-9453588:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9454789-9454919:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9457500-9457621:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9458183-9458279:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9465641-9465751:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9467394-9467594:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9469533-9469617:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9487305-9487429:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9507820-9507880:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9508758-9508837:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:9513789-9513844:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:9515805-9515918:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:9537558-9537663:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:9542088-9542208:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:9601525-9601595:1:exon

LOC116987197
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987197
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10783473..10792617
location: region:10783473-10792617:1
so has part: feature:10783473-10792617:1:exon
subclass of: SO_0000011

116987197
type: Gene
SIO_000068: ncbigene

position:10783473:1
position: 10783473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10792617:1
position: 10792617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10783473-10792617:1:exon

LOC116987197
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987197
product: uncharacterized LOC116987197
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_004415661.1
SIO_010081: LOC116987197
subclass of: SO_0000673
so part of: LOC116987197
location: join(10783473..10783613,10788305..10788309,10792574..10792617)
location: region:10783473-10792617:1
so has part: feature:10783473-10783613:1:exon
so has part: feature:10788305-10788309:1:exon
so has part: feature:10792574-10792617:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10783473-10783613:1:exon

position:10783613:1
position: 10783613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10788305-10788309:1:exon

position:10788305:1
position: 10788305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10788309:1
position: 10788309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10792574-10792617:1:exon

position:10792574:1
position: 10792574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987255
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987255
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10797850..10802225)
location: region:10797850-10802225:-1
so has part: feature:10797850-10802225:-1:exon
subclass of: SO_0000011

116987255
type: Gene
SIO_000068: ncbigene

position:10797850:-1
position: 10797850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10802225:-1
position: 10802225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10797850-10802225:-1:exon

LOC116987255
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987255
product: uncharacterized LOC116987255
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004415679.1
SIO_010081: LOC116987255
subclass of: SO_0000673
so part of: LOC116987255
location: complement(join(10797850..10800124,10801854..10802225))
location: region:10797850-10802225:-1
so has part: feature:10801854-10802225:-1:exon
so has part: feature:10797850-10800124:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10801854-10802225:-1:exon

position:10801854:-1
position: 10801854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10797850-10800124:-1:exon

position:10800124:-1
position: 10800124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

lhx5
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: lhx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10806033..10816127
location: region:10806033-10816127:1
so has part: feature:10806033-10816127:1:exon
subclass of: SO_0000010

116987256
type: Gene
SIO_000068: ncbigene

position:10806033:1
position: 10806033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10816127:1
position: 10816127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10806033-10816127:1:exon

lhx5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: lhx5
product: LIM homeobox 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_033043134.1
SIO_010081: lhx5
subclass of: SO_0000673
so part of: lhx5
location: join(10806033..10806564,10808318..10808541,10809279..10809556,10810361..10810526,10815101..10816127)
location: region:10806033-10816127:1
so has part: feature:10806033-10806564:1:exon
so has part: feature:10808318-10808541:1:exon
so has part: feature:10809279-10809556:1:exon
so has part: feature:10810361-10810526:1:exon
so has part: feature:10815101-10816127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10806033-10806564:1:exon

position:10806564:1
position: 10806564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10808318-10808541:1:exon

position:10808318:1
position: 10808318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10808541:1
position: 10808541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10809279-10809556:1:exon

position:10809279:1
position: 10809279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10809556:1
position: 10809556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10810361-10810526:1:exon

position:10810361:1
position: 10810361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10810526:1
position: 10810526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10815101-10816127:1:exon

position:10815101:1
position: 10815101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

lhx5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: lhx5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM/homeobox protein Lhx5
translation: MVHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCYQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYMSTSSFKDTNLNSVSSCTDRSLSPDIQDQSVDDTKETDNSTSSDKETQNNENEEQTTGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMMGSAPYNYYGEYQGDYYGQATNYDFFPHGPPSSQAHSPADSGYMQSSGPGATSLGVLEPPLSAHHPPTIGGSENQRYTDMISHPDTPSPEPGMTGPLHPIPGEVFSGGPSPPFSMSSNSGYSGPLSHPNQEMNETAVW
SIO_010081: lhx5
subclass of: SO_0000673
so part of: lhx5
location: join(10806395..10806564,10808318..10808541,10809279..10809556,10810361..10810526,10815101..10815486)
location: region:10806395-10815486:1
so has part: feature:10806395-10806564:1:exon
so has part: feature:10808318-10808541:1:exon
so has part: feature:10809279-10809556:1:exon
so has part: feature:10810361-10810526:1:exon
so has part: feature:10815101-10815486:1:exon

XP_032899025.1
type: Protein
SIO_000068: ncbiprotein

position:10806395:1
position: 10806395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10815486:1
position: 10815486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10806395-10806564:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10808318-10808541:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10809279-10809556:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10810361-10810526:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10815101-10815486:1:exon

LOC116987257
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987257
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10883586..10924875)
location: region:10883586-10924875:-1
so has part: feature:10883586-10924875:-1:exon
subclass of: SO_0000010

116987257
type: Gene
SIO_000068: ncbigene

position:10883586:-1
position: 10883586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10924875:-1
position: 10924875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10883586-10924875:-1:exon

LOC116987257
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987257
product: L-serine dehydratase/L-threonine deaminase-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_033043137.1
SIO_010081: LOC116987257
subclass of: SO_0000673
so part of: LOC116987257
location: complement(join(10883586..10884207,10887968..10888092,10889777..10890004,10896712..10896800,10910293..10910432,10911756..10911795,10911903..10912064,10924639..10924875))
location: region:10883586-10924875:-1
so has part: feature:10924639-10924875:-1:exon
so has part: feature:10911903-10912064:-1:exon
so has part: feature:10911756-10911795:-1:exon
so has part: feature:10910293-10910432:-1:exon
so has part: feature:10896712-10896800:-1:exon
so has part: feature:10889777-10890004:-1:exon
so has part: feature:10887968-10888092:-1:exon
so has part: feature:10883586-10884207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10924639-10924875:-1:exon

position:10924639:-1
position: 10924639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10911903-10912064:-1:exon

position:10911903:-1
position: 10911903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10912064:-1
position: 10912064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10911756-10911795:-1:exon

position:10911756:-1
position: 10911756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10911795:-1
position: 10911795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10910293-10910432:-1:exon

position:10910293:-1
position: 10910293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10910432:-1
position: 10910432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10896712-10896800:-1:exon

position:10896712:-1
position: 10896712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10896800:-1
position: 10896800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10889777-10890004:-1:exon

position:10889777:-1
position: 10889777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10890004:-1
position: 10890004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10887968-10888092:-1:exon

position:10887968:-1
position: 10887968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10888092:-1
position: 10888092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10883586-10884207:-1:exon

position:10884207:-1
position: 10884207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987257
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987257
product: L-serine dehydratase/L-threonine deaminase-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_033043135.1
SIO_010081: LOC116987257
subclass of: SO_0000673
so part of: LOC116987257
location: complement(join(10883586..10884207,10887968..10888092,10889777..10890004,10896712..10896800,10910293..10910432,10911756..10911795,10911903..10912064,10924603..10924875))
location: region:10883586-10924875:-1
so has part: feature:10924603-10924875:-1:exon
so has part: feature:10911903-10912064:-1:exon
so has part: feature:10911756-10911795:-1:exon
so has part: feature:10910293-10910432:-1:exon
so has part: feature:10896712-10896800:-1:exon
so has part: feature:10889777-10890004:-1:exon
so has part: feature:10887968-10888092:-1:exon
so has part: feature:10883586-10884207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10924603-10924875:-1:exon

position:10924603:-1
position: 10924603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10911903-10912064:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10911756-10911795:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10910293-10910432:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10896712-10896800:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10889777-10890004:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10887968-10888092:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10883586-10884207:-1:exon

LOC116987257
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987257
product: L-serine dehydratase/L-threonine deaminase-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033043136.1
SIO_010081: LOC116987257
subclass of: SO_0000673
so part of: LOC116987257
location: complement(join(10883586..10884207,10887968..10888092,10889777..10890004,10896712..10896800,10910293..10910432,10911756..10911795,10911903..10912085,10924603..10924875))
location: region:10883586-10924875:-1
so has part: feature:10924603-10924875:-1:exon
so has part: feature:10911903-10912085:-1:exon
so has part: feature:10911756-10911795:-1:exon
so has part: feature:10910293-10910432:-1:exon
so has part: feature:10896712-10896800:-1:exon
so has part: feature:10889777-10890004:-1:exon
so has part: feature:10887968-10888092:-1:exon
so has part: feature:10883586-10884207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10924603-10924875:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10911903-10912085:-1:exon

position:10912085:-1
position: 10912085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10911756-10911795:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10910293-10910432:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10896712-10896800:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10889777-10890004:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10887968-10888092:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10883586-10884207:-1:exon

LOC116987257
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987257
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-serine dehydratase/L-threonine deaminase-like
translation: MASTEQKSFHICTPLHKSLALSKVAGTTIYLKLDNVQPTGSFKIRGVGHLCQKAAEKNCKHFVCSSGGNAGLAAAYAAQKLQIPATILVPSSTPLFTIERLEEYGALVEVVGKVWDDANKQALKLSENDGWVYIPPFDHPLIWEGHASIVVELWDALPCKPGAIVLSVGGGGLLCGVVEGLKKVGWRDVPIIAMETKGADSLSEAVKAGRLVTLPDITSVAKSLGAKTVCEKALQNTQEHNVYSEVISDYKAVHAVERFLDDERILVEPACGASIAAVYSGILRRLQQEGELPKDMQPVVVIVCGGSSITMAQLNEYRMQLQRDA
SIO_010081: LOC116987257
subclass of: SO_0000673
so part of: LOC116987257
location: complement(join(10884011..10884207,10887968..10888092,10889777..10890004,10896712..10896800,10910293..10910432,10911756..10911795,10911903..10912061))
location: region:10884011-10912061:-1
so has part: feature:10911903-10912061:-1:exon
so has part: feature:10911756-10911795:-1:exon
so has part: feature:10910293-10910432:-1:exon
so has part: feature:10896712-10896800:-1:exon
so has part: feature:10889777-10890004:-1:exon
so has part: feature:10887968-10888092:-1:exon
so has part: feature:10884011-10884207:-1:exon

XP_032899026.1
type: Protein
SIO_000068: ncbiprotein

position:10884011:-1
position: 10884011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10912061:-1
position: 10912061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10911903-10912061:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10911756-10911795:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10910293-10910432:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10896712-10896800:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10889777-10890004:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10887968-10888092:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10884011-10884207:-1:exon

LOC116987257
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987257
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-serine dehydratase/L-threonine deaminase-like
translation: MASTEQKSFHICTPLHKSLALSKVAGTTIYLKLDNVQPTGSFKIRGVGHLCQKAAEKNCKHFVCSSGGNAGLAAAYAAQKLQIPATILVPSSTPLFTIERLEEYGALVEVVGKVWDDANKQALKLSENDGWVYIPPFDHPLIWEGHASIVVELWDALPCKPGAIVLSVGGGGLLCGVVEGLKKVGWRDVPIIAMETKGADSLSEAVKAGRLVTLPDITSVAKSLGAKTVCEKALQNTQEHNVYSEVISDYKAVHAVERFLDDERILVEPACGASIAAVYSGILRRLQQEGELPKDMQPVVVIVCGGSSITMAQLNEYRMQLQRDA
SIO_010081: LOC116987257
subclass of: SO_0000673
so part of: LOC116987257
location: complement(join(10884011..10884207,10887968..10888092,10889777..10890004,10896712..10896800,10910293..10910432,10911756..10911795,10911903..10912061))
location: region:10884011-10912061:-1
so has part: feature:10911903-10912061:-1:exon
so has part: feature:10911756-10911795:-1:exon
so has part: feature:10910293-10910432:-1:exon
so has part: feature:10896712-10896800:-1:exon
so has part: feature:10889777-10890004:-1:exon
so has part: feature:10887968-10888092:-1:exon
so has part: feature:10884011-10884207:-1:exon

XP_032899027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10911903-10912061:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10911756-10911795:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10910293-10910432:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10896712-10896800:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10889777-10890004:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10887968-10888092:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10884011-10884207:-1:exon

LOC116987257
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987257
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-serine dehydratase/L-threonine deaminase-like
translation: MASTEQKSFHICTPLHKSLALSKVAGTTIYLKLDNVQPTGSFKIRGVGHLCQKAAEKNCKHFVCSSGGNAGLAAAYAAQKLQIPATILVPSSTPLFTIERLEEYGALVEVVGKVWDDANKQALKLSENDGWVYIPPFDHPLIWEGHASIVVELWDALPCKPGAIVLSVGGGGLLCGVVEGLKKVGWRDVPIIAMETKGADSLSEAVKAGRLVTLPDITSVAKSLGAKTVCEKALQNTQEHNVYSEVISDYKAVHAVERFLDDERILVEPACGASIAAVYSGILRRLQQEGELPKDMQPVVVIVCGGSSITMAQLNEYRMQLQRDA
SIO_010081: LOC116987257
subclass of: SO_0000673
so part of: LOC116987257
location: complement(join(10884011..10884207,10887968..10888092,10889777..10890004,10896712..10896800,10910293..10910432,10911756..10911795,10911903..10912061))
location: region:10884011-10912061:-1
so has part: feature:10911903-10912061:-1:exon
so has part: feature:10911756-10911795:-1:exon
so has part: feature:10910293-10910432:-1:exon
so has part: feature:10896712-10896800:-1:exon
so has part: feature:10889777-10890004:-1:exon
so has part: feature:10887968-10888092:-1:exon
so has part: feature:10884011-10884207:-1:exon

XP_032899028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10911903-10912061:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10911756-10911795:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10910293-10910432:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10896712-10896800:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10889777-10890004:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10887968-10888092:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10884011-10884207:-1:exon

tesc
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: tesc
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10943263..10971876
location: region:10943263-10971876:1
so has part: feature:10943263-10971876:1:exon
subclass of: SO_0000010

116987258
type: Gene
SIO_000068: ncbigene

position:10943263:1
position: 10943263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10971876:1
position: 10971876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10943263-10971876:1:exon

tesc
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tesc
product: tescalcin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_033043138.1
SIO_010081: tesc
subclass of: SO_0000673
so part of: tesc
location: join(10943263..10943511,10949245..10949314,10949422..10949502,10950220..10950359,10960642..10960703,10962274..10962378,10967220..10967267,10970646..10971876)
location: region:10943263-10971876:1
so has part: feature:10943263-10943511:1:exon
so has part: feature:10949245-10949314:1:exon
so has part: feature:10949422-10949502:1:exon
so has part: feature:10950220-10950359:1:exon
so has part: feature:10960642-10960703:1:exon
so has part: feature:10962274-10962378:1:exon
so has part: feature:10967220-10967267:1:exon
so has part: feature:10970646-10971876:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10943263-10943511:1:exon

position:10943511:1
position: 10943511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10949245-10949314:1:exon

position:10949245:1
position: 10949245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10949314:1
position: 10949314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10949422-10949502:1:exon

position:10949422:1
position: 10949422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10949502:1
position: 10949502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10950220-10950359:1:exon

position:10950220:1
position: 10950220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10950359:1
position: 10950359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10960642-10960703:1:exon

position:10960642:1
position: 10960642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10960703:1
position: 10960703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10962274-10962378:1:exon

position:10962274:1
position: 10962274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10962378:1
position: 10962378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10967220-10967267:1:exon

position:10967220:1
position: 10967220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10967267:1
position: 10967267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10970646-10971876:1:exon

position:10970646:1
position: 10970646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tesc
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tesc
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcineurin B homologous protein 3
translation: MGASPSLSAREIRNLADSTSFSSEQIEILHRRFLHLTDGKTTMSRNSFDNVPDLDTNPIKSRIVNAFFDGRNLGLRSKERVDEITFENFLTTLSFFQHVEDTHPKEDLEFCKVEKLKFLFRMYDTNGDGKITLEELREIVDELLSKKTTTDLTSSSIADAAMLEAANICMGQTETDEQYDGITFTDFLQIMRDLKIESKMHVRFLQMDTTAMCTQ
SIO_010081: tesc
subclass of: SO_0000673
so part of: tesc
location: join(10943451..10943511,10949245..10949314,10949422..10949502,10950220..10950359,10960642..10960703,10962274..10962378,10967220..10967267,10970646..10970726)
location: region:10943451-10970726:1
so has part: feature:10943451-10943511:1:exon
so has part: feature:10949245-10949314:1:exon
so has part: feature:10949422-10949502:1:exon
so has part: feature:10950220-10950359:1:exon
so has part: feature:10960642-10960703:1:exon
so has part: feature:10962274-10962378:1:exon
so has part: feature:10967220-10967267:1:exon
so has part: feature:10970646-10970726:1:exon

XP_032899029.1
type: Protein
SIO_000068: ncbiprotein

position:10943451:1
position: 10943451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10970726:1
position: 10970726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10943451-10943511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10949245-10949314:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10949422-10949502:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10950220-10950359:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10960642-10960703:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10962274-10962378:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10967220-10967267:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10970646-10970726:1:exon

fbxo21
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: fbxo21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10973054..11004587)
location: region:10973054-11004587:-1
so has part: feature:10973054-11004587:-1:exon
subclass of: SO_0000010

116987259
type: Gene
SIO_000068: ncbigene

position:10973054:-1
position: 10973054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11004587:-1
position: 11004587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10973054-11004587:-1:exon

fbxo21
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: fbxo21
product: F-box protein 21
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_033043139.1
SIO_010081: fbxo21
subclass of: SO_0000673
so part of: fbxo21
location: complement(join(10973054..10973592,10975256..10975413,10978248..10978438,10979781..10979913,10981526..10981702,10982631..10982767,10982848..10982978,10983481..10983627,10984255..10984376,10984498..10984592,10986274..10986409,11004352..11004587))
location: region:10973054-11004587:-1
so has part: feature:11004352-11004587:-1:exon
so has part: feature:10986274-10986409:-1:exon
so has part: feature:10984498-10984592:-1:exon
so has part: feature:10984255-10984376:-1:exon
so has part: feature:10983481-10983627:-1:exon
so has part: feature:10982848-10982978:-1:exon
so has part: feature:10982631-10982767:-1:exon
so has part: feature:10981526-10981702:-1:exon
so has part: feature:10979781-10979913:-1:exon
so has part: feature:10978248-10978438:-1:exon
so has part: feature:10975256-10975413:-1:exon
so has part: feature:10973054-10973592:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11004352-11004587:-1:exon

position:11004352:-1
position: 11004352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10986274-10986409:-1:exon

position:10986274:-1
position: 10986274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10986409:-1
position: 10986409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10984498-10984592:-1:exon

position:10984498:-1
position: 10984498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10984592:-1
position: 10984592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10984255-10984376:-1:exon

position:10984255:-1
position: 10984255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10984376:-1
position: 10984376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10983481-10983627:-1:exon

position:10983481:-1
position: 10983481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10983627:-1
position: 10983627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10982848-10982978:-1:exon

position:10982848:-1
position: 10982848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10982978:-1
position: 10982978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10982631-10982767:-1:exon

position:10982631:-1
position: 10982631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10982767:-1
position: 10982767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10981526-10981702:-1:exon

position:10981526:-1
position: 10981526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10981702:-1
position: 10981702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:10979781-10979913:-1:exon

position:10979781:-1
position: 10979781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10979913:-1
position: 10979913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:10978248-10978438:-1:exon

position:10978248:-1
position: 10978248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10978438:-1
position: 10978438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:10975256-10975413:-1:exon

position:10975256:-1
position: 10975256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10975413:-1
position: 10975413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:10973054-10973592:-1:exon

position:10973592:-1
position: 10973592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

fbxo21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: fbxo21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box only protein 21
translation: MAMLEEGEGDGEGDGDGDGDGGLMALPEEVLEQIFCCPSLDHLDVVSICLTCRKLQEVCQGRSTVWKRRFTQRWPRMIKYYTISGSHNWWEEYRTRHTIGWETMKIVDSFSKRFFTKEVPVEGFKDIEALDGSFHFIEDELLSILNADGRKYLTRKYYSRKILCFLRQQKLMKTLKEFLSSPPEQKKLIEGVVLIDLYCNPLVDTSLENILLQLDHITEEVKKVLRLTKSSHPSITAERDGTFIDFELQQQALDVLNCVLYKQLKFKGNENDYYNPMNSYIHEVLRQKKGIPITLCVVYSTIAKNLGVRLEPVSFPGHFLLRWCQKPEGSDDMLDYIYIDAFDKGKQCTAKECEHLIGQKVAANFYSSVTIKDVLFRMVTNLFHLGKREASDQSYQLLRNALDLYLTLAPDDVQYLMLQARLYFHLGINPEKVLDILQHIQAVDPLQHGVVGHLVQLTLEQIARKDQTAELQVKKHTEEKHIKVEFSVGLIMKHKRYGYDCVIYGWDPKCMMGLDWMRTMGVHNLPHGPDQPFYNVLVQDGSCRYAAQENLLYNSSPMQIGHQEVGRYFSEFCGTHYVANEELQTQYPEDLVLISQLVMKVYDHP
SIO_010081: fbxo21
subclass of: SO_0000673
so part of: fbxo21
location: complement(join(10973420..10973592,10975256..10975413,10978248..10978438,10979781..10979913,10981526..10981702,10982631..10982767,10982848..10982978,10983481..10983627,10984255..10984376,10984498..10984592,10986274..10986409,11004352..11004569))
location: region:10973420-11004569:-1
so has part: feature:11004352-11004569:-1:exon
so has part: feature:10986274-10986409:-1:exon
so has part: feature:10984498-10984592:-1:exon
so has part: feature:10984255-10984376:-1:exon
so has part: feature:10983481-10983627:-1:exon
so has part: feature:10982848-10982978:-1:exon
so has part: feature:10982631-10982767:-1:exon
so has part: feature:10981526-10981702:-1:exon
so has part: feature:10979781-10979913:-1:exon
so has part: feature:10978248-10978438:-1:exon
so has part: feature:10975256-10975413:-1:exon
so has part: feature:10973420-10973592:-1:exon

XP_032899030.1
type: Protein
SIO_000068: ncbiprotein

position:10973420:-1
position: 10973420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11004569:-1
position: 11004569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11004352-11004569:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10986274-10986409:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10984498-10984592:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10984255-10984376:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10983481-10983627:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10982848-10982978:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10982631-10982767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10981526-10981702:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10979781-10979913:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:10978248-10978438:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:10975256-10975413:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:10973420-10973592:-1:exon

plbd2
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: plbd2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11023403..11055196)
location: region:11023403-11055196:-1
so has part: feature:11023403-11055196:-1:exon
subclass of: SO_0000010

116987263
type: Gene
SIO_000068: ncbigene

position:11023403:-1
position: 11023403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11055196:-1
position: 11055196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11023403-11055196:-1:exon

plbd2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: plbd2
product: phospholipase B domain containing 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_033043146.1
SIO_010081: plbd2
subclass of: SO_0000673
so part of: plbd2
location: complement(join(11023403..11023843,11026608..11026770,11028646..11028798,11031954..11032025,11032614..11032709,11035916..11036076,11037835..11037926,11038779..11038993,11040728..11040828,11049046..11049216,11053473..11053566,11054921..11055196))
location: region:11023403-11055196:-1
so has part: feature:11054921-11055196:-1:exon
so has part: feature:11053473-11053566:-1:exon
so has part: feature:11049046-11049216:-1:exon
so has part: feature:11040728-11040828:-1:exon
so has part: feature:11038779-11038993:-1:exon
so has part: feature:11037835-11037926:-1:exon
so has part: feature:11035916-11036076:-1:exon
so has part: feature:11032614-11032709:-1:exon
so has part: feature:11031954-11032025:-1:exon
so has part: feature:11028646-11028798:-1:exon
so has part: feature:11026608-11026770:-1:exon
so has part: feature:11023403-11023843:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11054921-11055196:-1:exon

position:11054921:-1
position: 11054921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11053473-11053566:-1:exon

position:11053473:-1
position: 11053473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11053566:-1
position: 11053566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11049046-11049216:-1:exon

position:11049046:-1
position: 11049046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11049216:-1
position: 11049216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11040728-11040828:-1:exon

position:11040728:-1
position: 11040728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11040828:-1
position: 11040828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11038779-11038993:-1:exon

position:11038779:-1
position: 11038779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11038993:-1
position: 11038993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11037835-11037926:-1:exon

position:11037835:-1
position: 11037835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11037926:-1
position: 11037926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11035916-11036076:-1:exon

position:11035916:-1
position: 11035916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11036076:-1
position: 11036076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11032614-11032709:-1:exon

position:11032614:-1
position: 11032614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11032709:-1
position: 11032709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11031954-11032025:-1:exon

position:11031954:-1
position: 11031954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11032025:-1
position: 11032025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11028646-11028798:-1:exon

position:11028646:-1
position: 11028646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11028798:-1
position: 11028798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11026608-11026770:-1:exon

position:11026608:-1
position: 11026608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11026770:-1
position: 11026770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11023403-11023843:-1:exon

position:11023843:-1
position: 11023843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

plbd2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: plbd2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative phospholipase B-like 2
translation: MAAAVGPERPRCPAQPRPAALLLLLLTALLQPLLATSASHFISAVLEKHGGRLRVVPGLRRDGVAWGSFRDDIKTTGWAYLELTTNGTYNDSIQAYAAGIVEAEITRSYIYMHWMNTLYGYCEPLKYQTAYCEKLKTYIESNLAWMEEILAQQPIDRDTDPYWYQIRLALLQLKGMDDGYNKHILFPTGKFSIRSDGLILLQMTGDLEDLENVFNKSDSSKMFGSGSCSALIKLMPDNKELLISHDTWSNYQTMLRIIKKYRMPFKTFPAGDVIPGEVQAFSSYPGTIFSGDDFYILSSGLVTIETTIGNNNAHLWSFVKPYGSVMEWLRNIVANRLATTGAEWAATFKKFNSGTYNNQWMIVDYNFFKPGKFNIDNNLLTVLEQIPGEIVVADKTDVLMQNGYWASYNIPYFEDIYNASGKLALFQEYGNWFSYDKSPRALIFRRNQTSVTDVNSMIKLMRYNNFKKDPLSKCQQCDPKPNGENSISARSDLNPANGSYPFSALGQRPHGGTDMKVTSYEWHKTFKMFAVSGPTWDEVPAFRWSKSPFSKLMHMGHPDLWKFMPVMVDWE
SIO_010081: plbd2
subclass of: SO_0000673
so part of: plbd2
location: complement(join(11023676..11023843,11026608..11026770,11028646..11028798,11031954..11032025,11032614..11032709,11035916..11036076,11037835..11037926,11038779..11038993,11040728..11040828,11049046..11049216,11053473..11053566,11054921..11055150))
location: region:11023676-11055150:-1
so has part: feature:11054921-11055150:-1:exon
so has part: feature:11053473-11053566:-1:exon
so has part: feature:11049046-11049216:-1:exon
so has part: feature:11040728-11040828:-1:exon
so has part: feature:11038779-11038993:-1:exon
so has part: feature:11037835-11037926:-1:exon
so has part: feature:11035916-11036076:-1:exon
so has part: feature:11032614-11032709:-1:exon
so has part: feature:11031954-11032025:-1:exon
so has part: feature:11028646-11028798:-1:exon
so has part: feature:11026608-11026770:-1:exon
so has part: feature:11023676-11023843:-1:exon

XP_032899037.1
type: Protein
SIO_000068: ncbiprotein

position:11023676:-1
position: 11023676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11055150:-1
position: 11055150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11054921-11055150:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11053473-11053566:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11049046-11049216:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11040728-11040828:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11038779-11038993:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11037835-11037926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11035916-11036076:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11032614-11032709:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11031954-11032025:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11028646-11028798:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11026608-11026770:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11023676-11023843:-1:exon

slc8b1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: slc8b1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11055383..11084988
location: region:11055383-11084988:1
so has part: feature:11055383-11084988:1:exon
subclass of: SO_0000010

116987262
type: Gene
SIO_000068: ncbigene

position:11055383:1
position: 11055383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11084988:1
position: 11084988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11055383-11084988:1:exon

slc8b1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: slc8b1
product: solute carrier family 8 member B1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_033043144.1
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11055383..11055495,11056178..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11076253)
location: region:11055383-11076253:1
so has part: feature:11055383-11055495:1:exon
so has part: feature:11056178-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11076253:1:exon

position:11076253:1
position: 11076253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11055383-11055495:1:exon

position:11055495:1
position: 11055495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11056178-11056389:1:exon

position:11056178:1
position: 11056178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11056389:1
position: 11056389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11059887-11060039:1:exon

position:11059887:1
position: 11059887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11060039:1
position: 11060039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11061884-11061936:1:exon

position:11061884:1
position: 11061884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11061936:1
position: 11061936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11063157-11063214:1:exon

position:11063157:1
position: 11063157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11063214:1
position: 11063214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11064367-11064472:1:exon

position:11064367:1
position: 11064367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11064472:1
position: 11064472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11064792-11064959:1:exon

position:11064792:1
position: 11064792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11064959:1
position: 11064959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11065096-11065206:1:exon

position:11065096:1
position: 11065096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11065206:1
position: 11065206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11066144-11066197:1:exon

position:11066144:1
position: 11066144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11066197:1
position: 11066197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11067608-11067744:1:exon

position:11067608:1
position: 11067608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11067744:1
position: 11067744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11068519-11068660:1:exon

position:11068519:1
position: 11068519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11068660:1
position: 11068660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11070349-11070470:1:exon

position:11070349:1
position: 11070349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11070470:1
position: 11070470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11071953-11072106:1:exon

position:11071953:1
position: 11071953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11072106:1
position: 11072106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:11073631-11073711:1:exon

position:11073631:1
position: 11073631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11073711:1
position: 11073711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:11073795-11073859:1:exon

position:11073795:1
position: 11073795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11073859:1
position: 11073859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:11075375-11076253:1:exon

position:11075375:1
position: 11075375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

slc8b1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 386614
gene: slc8b1
product: solute carrier family 8 member B1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004415680.1
SIO_010081: slc8b1
so part of: slc8b1
location: join(11055391..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11076121,11084978..11084988)
location: region:11055391-11084988:1
so has part: feature:11055391-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11076121:1:exon
so has part: feature:11084978-11084988:1:exon

position:11055391:1
position: 11055391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11055391-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11070349-11070470:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11071953-11072106:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11075375-11076121:1:exon

position:11076121:1
position: 11076121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:11084978-11084988:1:exon

position:11084978:1
position: 11084978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

slc8b1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: slc8b1
product: solute carrier family 8 member B1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_033043142.1
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11055391..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11076253)
location: region:11055391-11076253:1
so has part: feature:11055391-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11076253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11055391-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11070349-11070470:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11071953-11072106:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11075375-11076253:1:exon

slc8b1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: slc8b1
product: solute carrier family 8 member B1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033043145.1
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11055391..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11073631..11073711,11073795..11073859,11075375..11076253)
location: region:11055391-11076253:1
so has part: feature:11055391-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11076253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11055391-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11075375-11076253:1:exon

slc8b1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: slc8b1
product: solute carrier family 8 member B1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033043143.1
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11055391..11055803,11056178..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11076253)
location: region:11055391-11076253:1
so has part: feature:11055391-11055803:1:exon
so has part: feature:11056178-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11076253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11055391-11055803:1:exon

position:11055803:1
position: 11055803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11056178-11056389:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11070349-11070470:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11071953-11072106:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11075375-11076253:1:exon

slc8b1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: slc8b1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial sodium/calcium exchanger protein isoform X1
translation: MKTRDLAVICCLLWLGTAQCDSRETTGAAESYPLVNVAGIIEPYSSENTFNASSLSLFEGTSRSMECRNVVHLNGSQWCSFVKTTEDCRIGSGFIDYLQGAVCGFCHDLLPLAIVLYAVWLIYLFMFLGITAEKFFCPNLAAIATSLKLSHNVAGVTFLALGNGAPDLFSAMAAFSDTRTASLAIGALFGAGIFVTTVVAGGVGLARPFIVASRPFLRDVTFYMAAVFWAFLVIYFGSIDLAQALGYLALYAVYVLVVIISSVIYQKGKNQPQTSLYNNHSEINGNDDEIPTRLRRPLEDTSEYQSLIETEESRSTKSILLDSLNPIDIQKWRRKHLPWKIFKCLKLPIEFLLLLCIPVVDFDQDDHNWKRPLNCLQIVTGSLVCILAFKSGYYGLLLIRGQYPVWAVVLVITVVIAAVVFFATKNEEPPKFHCVFAFIGFFFSIVLINSVAIEIVNLLHAFGIIFNLSNTVLGLTLLAWGNSIGDLFSDITVARQGYPRMAIAACFGGIIFNMLFGIGLSALIQMPYNDNVLEIKCDGLLDWILVGSLGLSLVMSFILIPLQGFKFTRLYSIILVSYYVIFVIIALLTEAEIIHI
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11056192..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11075563)
location: region:11056192-11075563:1
so has part: feature:11056192-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11075563:1:exon

XP_032899033.1
type: Protein
SIO_000068: ncbiprotein

position:11056192:1
position: 11056192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11075563:1
position: 11075563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11056192-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11070349-11070470:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11071953-11072106:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11075375-11075563:1:exon

slc8b1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: slc8b1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial sodium/calcium exchanger protein isoform X1
translation: MKTRDLAVICCLLWLGTAQCDSRETTGAAESYPLVNVAGIIEPYSSENTFNASSLSLFEGTSRSMECRNVVHLNGSQWCSFVKTTEDCRIGSGFIDYLQGAVCGFCHDLLPLAIVLYAVWLIYLFMFLGITAEKFFCPNLAAIATSLKLSHNVAGVTFLALGNGAPDLFSAMAAFSDTRTASLAIGALFGAGIFVTTVVAGGVGLARPFIVASRPFLRDVTFYMAAVFWAFLVIYFGSIDLAQALGYLALYAVYVLVVIISSVIYQKGKNQPQTSLYNNHSEINGNDDEIPTRLRRPLEDTSEYQSLIETEESRSTKSILLDSLNPIDIQKWRRKHLPWKIFKCLKLPIEFLLLLCIPVVDFDQDDHNWKRPLNCLQIVTGSLVCILAFKSGYYGLLLIRGQYPVWAVVLVITVVIAAVVFFATKNEEPPKFHCVFAFIGFFFSIVLINSVAIEIVNLLHAFGIIFNLSNTVLGLTLLAWGNSIGDLFSDITVARQGYPRMAIAACFGGIIFNMLFGIGLSALIQMPYNDNVLEIKCDGLLDWILVGSLGLSLVMSFILIPLQGFKFTRLYSIILVSYYVIFVIIALLTEAEIIHI
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11056192..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11075563)
location: region:11056192-11075563:1
so has part: feature:11056192-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11075563:1:exon

XP_032899034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11056192-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11070349-11070470:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11071953-11072106:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11075375-11075563:1:exon

slc8b1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: slc8b1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial sodium/calcium exchanger protein isoform X1
translation: MKTRDLAVICCLLWLGTAQCDSRETTGAAESYPLVNVAGIIEPYSSENTFNASSLSLFEGTSRSMECRNVVHLNGSQWCSFVKTTEDCRIGSGFIDYLQGAVCGFCHDLLPLAIVLYAVWLIYLFMFLGITAEKFFCPNLAAIATSLKLSHNVAGVTFLALGNGAPDLFSAMAAFSDTRTASLAIGALFGAGIFVTTVVAGGVGLARPFIVASRPFLRDVTFYMAAVFWAFLVIYFGSIDLAQALGYLALYAVYVLVVIISSVIYQKGKNQPQTSLYNNHSEINGNDDEIPTRLRRPLEDTSEYQSLIETEESRSTKSILLDSLNPIDIQKWRRKHLPWKIFKCLKLPIEFLLLLCIPVVDFDQDDHNWKRPLNCLQIVTGSLVCILAFKSGYYGLLLIRGQYPVWAVVLVITVVIAAVVFFATKNEEPPKFHCVFAFIGFFFSIVLINSVAIEIVNLLHAFGIIFNLSNTVLGLTLLAWGNSIGDLFSDITVARQGYPRMAIAACFGGIIFNMLFGIGLSALIQMPYNDNVLEIKCDGLLDWILVGSLGLSLVMSFILIPLQGFKFTRLYSIILVSYYVIFVIIALLTEAEIIHI
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11056192..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11070349..11070470,11071953..11072106,11073631..11073711,11073795..11073859,11075375..11075563)
location: region:11056192-11075563:1
so has part: feature:11056192-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11070349-11070470:1:exon
so has part: feature:11071953-11072106:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11075563:1:exon

XP_032899035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11056192-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11070349-11070470:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11071953-11072106:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11075375-11075563:1:exon

slc8b1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: slc8b1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial sodium/calcium exchanger protein isoform X2
translation: MKTRDLAVICCLLWLGTAQCDSRETTGAAESYPLVNVAGIIEPYSSENTFNASSLSLFEGTSRSMECRNVVHLNGSQWCSFVKTTEDCRIGSGFIDYLQGAVCGFCHDLLPLAIVLYAVWLIYLFMFLGITAEKFFCPNLAAIATSLKLSHNVAGVTFLALGNGAPDLFSAMAAFSDTRTASLAIGALFGAGIFVTTVVAGGVGLARPFIVASRPFLRDVTFYMAAVFWAFLVIYFGSIDLAQALGYLALYAVYVLVVIISSVIYQKGKNQPQTSLYNNHSEINGNDDEIPTRLRRPLEDTSEYQSLIETEESRSTKSILLDSLNPIDIQKWRRKHLPWKIFKCLKLPIEFLLLLCIPVVDFDQDDHNWKRPLNCLQIVTGSLVCILAFKSGYYLFSDITVARQGYPRMAIAACFGGIIFNMLFGIGLSALIQMPYNDNVLEIKCDGLLDWILVGSLGLSLVMSFILIPLQGFKFTRLYSIILVSYYVIFVIIALLTEAEIIHI
SIO_010081: slc8b1
subclass of: SO_0000673
so part of: slc8b1
location: join(11056192..11056389,11059887..11060039,11061884..11061936,11063157..11063214,11064367..11064472,11064792..11064959,11065096..11065206,11066144..11066197,11067608..11067744,11068519..11068660,11073631..11073711,11073795..11073859,11075375..11075563)
location: region:11056192-11075563:1
so has part: feature:11056192-11056389:1:exon
so has part: feature:11059887-11060039:1:exon
so has part: feature:11061884-11061936:1:exon
so has part: feature:11063157-11063214:1:exon
so has part: feature:11064367-11064472:1:exon
so has part: feature:11064792-11064959:1:exon
so has part: feature:11065096-11065206:1:exon
so has part: feature:11066144-11066197:1:exon
so has part: feature:11067608-11067744:1:exon
so has part: feature:11068519-11068660:1:exon
so has part: feature:11073631-11073711:1:exon
so has part: feature:11073795-11073859:1:exon
so has part: feature:11075375-11075563:1:exon

XP_032899036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11056192-11056389:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11059887-11060039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11061884-11061936:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11063157-11063214:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11064367-11064472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11064792-11064959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11065096-11065206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11066144-11066197:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11067608-11067744:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11068519-11068660:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11073631-11073711:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11073795-11073859:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11075375-11075563:1:exon

tpcn1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: tpcn1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11082378..11165387)
location: region:11082378-11165387:-1
so has part: feature:11082378-11165387:-1:exon
subclass of: SO_0000010

116987261
type: Gene
SIO_000068: ncbigene

position:11082378:-1
position: 11082378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11165387:-1
position: 11165387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11082378-11165387:-1:exon

tpcn1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: tpcn1
product: two pore segment channel 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_033043141.1
SIO_010081: tpcn1
subclass of: SO_0000673
so part of: tpcn1
location: complement(join(11082378..11083074,11084597..11084677,11087379..11087518,11088717..11088801,11091082..11091150,11091256..11091302,11091399..11091511,11092870..11092959,11093067..11093138,11095203..11095310,11096841..11096913,11100497..11100550,11102958..11103014,11103486..11103530,11105645..11105708,11106271..11106319,11106473..11106597,11109741..11109857,11109958..11110057,11110852..11110910,11113818..11113852,11117246..11117334,11118873..11119003,11120068..11120181,11121715..11121891,11129633..11129763,11165251..11165387))
location: region:11082378-11165387:-1
so has part: feature:11165251-11165387:-1:exon
so has part: feature:11129633-11129763:-1:exon
so has part: feature:11121715-11121891:-1:exon
so has part: feature:11120068-11120181:-1:exon
so has part: feature:11118873-11119003:-1:exon
so has part: feature:11117246-11117334:-1:exon
so has part: feature:11113818-11113852:-1:exon
so has part: feature:11110852-11110910:-1:exon
so has part: feature:11109958-11110057:-1:exon
so has part: feature:11109741-11109857:-1:exon
so has part: feature:11106473-11106597:-1:exon
so has part: feature:11106271-11106319:-1:exon
so has part: feature:11105645-11105708:-1:exon
so has part: feature:11103486-11103530:-1:exon
so has part: feature:11102958-11103014:-1:exon
so has part: feature:11100497-11100550:-1:exon
so has part: feature:11096841-11096913:-1:exon
so has part: feature:11095203-11095310:-1:exon
so has part: feature:11093067-11093138:-1:exon
so has part: feature:11092870-11092959:-1:exon
so has part: feature:11091399-11091511:-1:exon
so has part: feature:11091256-11091302:-1:exon
so has part: feature:11091082-11091150:-1:exon
so has part: feature:11088717-11088801:-1:exon
so has part: feature:11087379-11087518:-1:exon
so has part: feature:11084597-11084677:-1:exon
so has part: feature:11082378-11083074:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11165251-11165387:-1:exon

position:11165251:-1
position: 11165251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11129633-11129763:-1:exon

position:11129633:-1
position: 11129633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11129763:-1
position: 11129763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11121715-11121891:-1:exon

position:11121715:-1
position: 11121715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11121891:-1
position: 11121891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11120068-11120181:-1:exon

position:11120068:-1
position: 11120068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11120181:-1
position: 11120181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11118873-11119003:-1:exon

position:11118873:-1
position: 11118873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11119003:-1
position: 11119003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11117246-11117334:-1:exon

position:11117246:-1
position: 11117246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11117334:-1
position: 11117334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11113818-11113852:-1:exon

position:11113818:-1
position: 11113818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11113852:-1
position: 11113852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11110852-11110910:-1:exon

position:11110852:-1
position: 11110852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11110910:-1
position: 11110910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11109958-11110057:-1:exon

position:11109958:-1
position: 11109958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11110057:-1
position: 11110057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11109741-11109857:-1:exon

position:11109741:-1
position: 11109741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11109857:-1
position: 11109857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11106473-11106597:-1:exon

position:11106473:-1
position: 11106473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11106597:-1
position: 11106597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11106271-11106319:-1:exon

position:11106271:-1
position: 11106271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11106319:-1
position: 11106319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11105645-11105708:-1:exon

position:11105645:-1
position: 11105645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11105708:-1
position: 11105708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:11103486-11103530:-1:exon

position:11103486:-1
position: 11103486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11103530:-1
position: 11103530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:11102958-11103014:-1:exon

position:11102958:-1
position: 11102958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11103014:-1
position: 11103014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:11100497-11100550:-1:exon

position:11100497:-1
position: 11100497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11100550:-1
position: 11100550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:11096841-11096913:-1:exon

position:11096841:-1
position: 11096841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11096913:-1
position: 11096913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:11095203-11095310:-1:exon

position:11095203:-1
position: 11095203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11095310:-1
position: 11095310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:11093067-11093138:-1:exon

position:11093067:-1
position: 11093067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11093138:-1
position: 11093138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:11092870-11092959:-1:exon

position:11092870:-1
position: 11092870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11092959:-1
position: 11092959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:11091399-11091511:-1:exon

position:11091399:-1
position: 11091399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11091511:-1
position: 11091511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:11091256-11091302:-1:exon

position:11091256:-1
position: 11091256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11091302:-1
position: 11091302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:11091082-11091150:-1:exon

position:11091082:-1
position: 11091082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11091150:-1
position: 11091150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:11088717-11088801:-1:exon

position:11088717:-1
position: 11088717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11088801:-1
position: 11088801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:11087379-11087518:-1:exon

position:11087379:-1
position: 11087379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11087518:-1
position: 11087518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:11084597-11084677:-1:exon

position:11084597:-1
position: 11084597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11084677:-1
position: 11084677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:11082378-11083074:-1:exon

position:11083074:-1
position: 11083074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

tpcn1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: tpcn1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: two pore calcium channel protein 1
translation: MALPVDDDDVPLILTDDNTGLCADTNRDDIPNQNGGGYDIITAEVVVTPDVRDYRPSYGSLKQVWEMNYQEAAIYLQEGENNDKFFTHPKDQKALAAYLFVHNHIFYVMELISGLLLLILSLCEAPAVPSLRLDIYVHATLELLALLTVVFELGMKMRWLGFRTFIRHKRTMLKSSVLFVQFIEVIVVLIRQTSHVRVTRALRPIFLVDCRYCGAVRRNLRQIFQSLPPFIDILSLLLFFMVIFAILGFYLFSANPLDPYFSTPEDSLVSLFVLLTTANFPDVMMPAYSKNSWSCVFFIVYLSIELYFIMNLLLAVVFDTFNDVEKRKFKSLLLHKRLAIEHAFHLLVSKRRHNGISFKQFEGLMRFYYPRMSARDKYLTFKALKKSNTELLGIEDFYNFYEVTGLKWKAKRSGDYWFYDLPHTPFLIFKGINILVKSKAFRYAMYVVIAVNGIWILADTLMIKDGAFFLRIVPWSYIVFLTIYGVEMLLKITGLGPSEYFTSGWNLFDFLVTIFAFVGIVVLAFDMEPFYFIVILRPLQLLRLFKIKRRYRDVLDTMFELLPRMASLGLTLMIFYYSFAIVGMEFFGDVLYPNCCNNSMVADSYRWINRTIGDRTVIQGYYSLNNFNNILNSFVTLFELTVVNNWYIIMEGVVSQTSHWSRIYFMTFYIVTMVVLTIIVAFILDAFLFRMNYSRKNKDEEDENGIVFETEVDKAEIDRLLEYNKQNGSSSSAISGLVKLSSRMANNDQLKMVFIGRRLRTKSDLSIKMYEEEIQEWYEEHARINQMQQDQPLECILNSNTHLPSAELRQRSQTVT
SIO_010081: tpcn1
subclass of: SO_0000673
so part of: tpcn1
location: complement(join(11082949..11083074,11084597..11084677,11087379..11087518,11088717..11088801,11091082..11091150,11091256..11091302,11091399..11091511,11092870..11092959,11093067..11093138,11095203..11095310,11096841..11096913,11100497..11100550,11102958..11103014,11103486..11103530,11105645..11105708,11106271..11106319,11106473..11106597,11109741..11109857,11109958..11110057,11110852..11110910,11113818..11113852,11117246..11117334,11118873..11119003,11120068..11120181,11121715..11121891,11129633..11129763,11165251..11165350))
location: region:11082949-11165350:-1
so has part: feature:11165251-11165350:-1:exon
so has part: feature:11129633-11129763:-1:exon
so has part: feature:11121715-11121891:-1:exon
so has part: feature:11120068-11120181:-1:exon
so has part: feature:11118873-11119003:-1:exon
so has part: feature:11117246-11117334:-1:exon
so has part: feature:11113818-11113852:-1:exon
so has part: feature:11110852-11110910:-1:exon
so has part: feature:11109958-11110057:-1:exon
so has part: feature:11109741-11109857:-1:exon
so has part: feature:11106473-11106597:-1:exon
so has part: feature:11106271-11106319:-1:exon
so has part: feature:11105645-11105708:-1:exon
so has part: feature:11103486-11103530:-1:exon
so has part: feature:11102958-11103014:-1:exon
so has part: feature:11100497-11100550:-1:exon
so has part: feature:11096841-11096913:-1:exon
so has part: feature:11095203-11095310:-1:exon
so has part: feature:11093067-11093138:-1:exon
so has part: feature:11092870-11092959:-1:exon
so has part: feature:11091399-11091511:-1:exon
so has part: feature:11091256-11091302:-1:exon
so has part: feature:11091082-11091150:-1:exon
so has part: feature:11088717-11088801:-1:exon
so has part: feature:11087379-11087518:-1:exon
so has part: feature:11084597-11084677:-1:exon
so has part: feature:11082949-11083074:-1:exon

XP_032899032.1
type: Protein
SIO_000068: ncbiprotein

position:11082949:-1
position: 11082949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11165350:-1
position: 11165350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11165251-11165350:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11129633-11129763:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11121715-11121891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11120068-11120181:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11118873-11119003:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11117246-11117334:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11113818-11113852:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11110852-11110910:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11109958-11110057:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11109741-11109857:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11106473-11106597:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11106271-11106319:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11105645-11105708:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11103486-11103530:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11102958-11103014:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11100497-11100550:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11096841-11096913:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:11095203-11095310:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:11093067-11093138:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:11092870-11092959:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:11091399-11091511:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:11091256-11091302:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:11091082-11091150:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:11088717-11088801:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:11087379-11087518:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:11084597-11084677:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:11082949-11083074:-1:exon

iqcd
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: iqcd
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11148527..11174938
location: region:11148527-11174938:1
so has part: feature:11148527-11174938:1:exon
subclass of: SO_0000010

116987264
type: Gene
SIO_000068: ncbigene

position:11148527:1
position: 11148527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11174938:1
position: 11174938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11148527-11174938:1:exon

iqcd
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: iqcd
product: IQ motif containing D, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033043148.1
SIO_010081: iqcd
subclass of: SO_0000673
so part of: iqcd
location: join(11148527..11148539,11152095..11152098,11165716..11165912,11169948..11170730,11173769..11174002,11174346..11174417,11174549..11174938)
location: region:11148527-11174938:1
so has part: feature:11148527-11148539:1:exon
so has part: feature:11152095-11152098:1:exon
so has part: feature:11165716-11165912:1:exon
so has part: feature:11169948-11170730:1:exon
so has part: feature:11173769-11174002:1:exon
so has part: feature:11174346-11174417:1:exon
so has part: feature:11174549-11174938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11148527-11148539:1:exon

position:11148539:1
position: 11148539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11152095-11152098:1:exon

position:11152095:1
position: 11152095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11152098:1
position: 11152098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11165716-11165912:1:exon

position:11165716:1
position: 11165716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11165912:1
position: 11165912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11169948-11170730:1:exon

position:11169948:1
position: 11169948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11170730:1
position: 11170730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11173769-11174002:1:exon

position:11173769:1
position: 11173769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11174002:1
position: 11174002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11174346-11174417:1:exon

position:11174346:1
position: 11174346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11174417:1
position: 11174417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11174549-11174938:1:exon

position:11174549:1
position: 11174549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

iqcd
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: iqcd
product: IQ motif containing D, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_033043149.1
SIO_010081: iqcd
subclass of: SO_0000673
so part of: iqcd
location: join(11165494..11165801,11169948..11170730,11173769..11174002,11174346..11174417,11174549..11174938)
location: region:11165494-11174938:1
so has part: feature:11165494-11165801:1:exon
so has part: feature:11169948-11170730:1:exon
so has part: feature:11173769-11174002:1:exon
so has part: feature:11174346-11174417:1:exon
so has part: feature:11174549-11174938:1:exon

position:11165494:1
position: 11165494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11165494-11165801:1:exon

position:11165801:1
position: 11165801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11169948-11170730:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11173769-11174002:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11174346-11174417:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11174549-11174938:1:exon

iqcd
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: iqcd
product: IQ motif containing D, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_033043147.1
SIO_010081: iqcd
subclass of: SO_0000673
so part of: iqcd
location: join(11165495..11165912,11169948..11170730,11173769..11174002,11174346..11174417,11174549..11174938)
location: region:11165495-11174938:1
so has part: feature:11165495-11165912:1:exon
so has part: feature:11169948-11170730:1:exon
so has part: feature:11173769-11174002:1:exon
so has part: feature:11174346-11174417:1:exon
so has part: feature:11174549-11174938:1:exon

position:11165495:1
position: 11165495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11165495-11165912:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11169948-11170730:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11173769-11174002:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11174346-11174417:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11174549-11174938:1:exon

iqcd
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: iqcd
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein regulatory complex protein 10
translation: MATEAIEQKNQIEAITVETNRARIDDNLTMKRVSPKVDVLQILEPVRRKLASIEAERIISVIEKTIDKLEKVTLLPHISNNLSRFSVALGLELTCAIREHVRLEQHFYYTVTKLIEIEHPEEDQNGMHKVKTKAERYNNFTLLQQALGSSVKNIIRLFDGTPSACQIIQMECRARKPVCMGLILALKKLRNFVFGRLLISPSEEKEKSEFVENIILQDKQNTVIIATLEAELAAAIKDKENEMLKKNEIIRKLKNNLLQLDLFSEDSIRQIKQDSEKQQQGDQKDSEGRILKLQEEIAQLRTQLNNSITEHRSTEQSLRKRKYKTETEIENWIQKYDADIEEKQEEYEQLVKIHKDEGILLFELESKIEAIESEYVQVVEDRKRRAEEKRIREEQIYLMGRAAVTIQSFWKGFKVRQLIKSFKKKKKKGKGKGRRK
SIO_010081: iqcd
subclass of: SO_0000673
so part of: iqcd
location: join(11170005..11170730,11173769..11174002,11174346..11174417,11174549..11174827)
location: region:11170005-11174827:1
so has part: feature:11170005-11170730:1:exon
so has part: feature:11173769-11174002:1:exon
so has part: feature:11174346-11174417:1:exon
so has part: feature:11174549-11174827:1:exon

XP_032899038.1
type: Protein
SIO_000068: ncbiprotein

position:11170005:1
position: 11170005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11174827:1
position: 11174827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11170005-11170730:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11173769-11174002:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11174346-11174417:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11174549-11174827:1:exon

iqcd
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: iqcd
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein regulatory complex protein 10
translation: MATEAIEQKNQIEAITVETNRARIDDNLTMKRVSPKVDVLQILEPVRRKLASIEAERIISVIEKTIDKLEKVTLLPHISNNLSRFSVALGLELTCAIREHVRLEQHFYYTVTKLIEIEHPEEDQNGMHKVKTKAERYNNFTLLQQALGSSVKNIIRLFDGTPSACQIIQMECRARKPVCMGLILALKKLRNFVFGRLLISPSEEKEKSEFVENIILQDKQNTVIIATLEAELAAAIKDKENEMLKKNEIIRKLKNNLLQLDLFSEDSIRQIKQDSEKQQQGDQKDSEGRILKLQEEIAQLRTQLNNSITEHRSTEQSLRKRKYKTETEIENWIQKYDADIEEKQEEYEQLVKIHKDEGILLFELESKIEAIESEYVQVVEDRKRRAEEKRIREEQIYLMGRAAVTIQSFWKGFKVRQLIKSFKKKKKKGKGKGRRK
SIO_010081: iqcd
subclass of: SO_0000673
so part of: iqcd
location: join(11170005..11170730,11173769..11174002,11174346..11174417,11174549..11174827)
location: region:11170005-11174827:1
so has part: feature:11170005-11170730:1:exon
so has part: feature:11173769-11174002:1:exon
so has part: feature:11174346-11174417:1:exon
so has part: feature:11174549-11174827:1:exon

XP_032899039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11170005-11170730:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11173769-11174002:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11174346-11174417:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11174549-11174827:1:exon

iqcd
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: iqcd
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein regulatory complex protein 10
translation: MATEAIEQKNQIEAITVETNRARIDDNLTMKRVSPKVDVLQILEPVRRKLASIEAERIISVIEKTIDKLEKVTLLPHISNNLSRFSVALGLELTCAIREHVRLEQHFYYTVTKLIEIEHPEEDQNGMHKVKTKAERYNNFTLLQQALGSSVKNIIRLFDGTPSACQIIQMECRARKPVCMGLILALKKLRNFVFGRLLISPSEEKEKSEFVENIILQDKQNTVIIATLEAELAAAIKDKENEMLKKNEIIRKLKNNLLQLDLFSEDSIRQIKQDSEKQQQGDQKDSEGRILKLQEEIAQLRTQLNNSITEHRSTEQSLRKRKYKTETEIENWIQKYDADIEEKQEEYEQLVKIHKDEGILLFELESKIEAIESEYVQVVEDRKRRAEEKRIREEQIYLMGRAAVTIQSFWKGFKVRQLIKSFKKKKKKGKGKGRRK
SIO_010081: iqcd
subclass of: SO_0000673
so part of: iqcd
location: join(11170005..11170730,11173769..11174002,11174346..11174417,11174549..11174827)
location: region:11170005-11174827:1
so has part: feature:11170005-11170730:1:exon
so has part: feature:11173769-11174002:1:exon
so has part: feature:11174346-11174417:1:exon
so has part: feature:11174549-11174827:1:exon

XP_032899040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11170005-11170730:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11173769-11174002:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11174346-11174417:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11174549-11174827:1:exon

rita1
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: rita1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11181481..11193173)
location: region:11181481-11193173:-1
so has part: feature:11181481-11193173:-1:exon
subclass of: SO_0000010

116987266
type: Gene
SIO_000068: ncbigene

position:11181481:-1
position: 11181481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11193173:-1
position: 11193173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11181481-11193173:-1:exon

rita1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rita1
product: RBPJ interacting and tubulin associated 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_033043153.1
SIO_010081: rita1
subclass of: SO_0000673
so part of: rita1
location: complement(join(11181481..11182321,11188186..11188544,11192844..11192996))
location: region:11181481-11192996:-1
so has part: feature:11192844-11192996:-1:exon
so has part: feature:11188186-11188544:-1:exon
so has part: feature:11181481-11182321:-1:exon

position:11192996:-1
position: 11192996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11192844-11192996:-1:exon

position:11192844:-1
position: 11192844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11188186-11188544:-1:exon

position:11188186:-1
position: 11188186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11188544:-1
position: 11188544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11181481-11182321:-1:exon

position:11182321:-1
position: 11182321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

rita1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: rita1
product: RBPJ interacting and tubulin associated 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_033043152.1
SIO_010081: rita1
subclass of: SO_0000673
so part of: rita1
location: complement(join(11181481..11182321,11188186..11188544,11190994..11191092,11192844..11192996))
location: region:11181481-11192996:-1
so has part: feature:11192844-11192996:-1:exon
so has part: feature:11190994-11191092:-1:exon
so has part: feature:11188186-11188544:-1:exon
so has part: feature:11181481-11182321:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11192844-11192996:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11190994-11191092:-1:exon

position:11190994:-1
position: 11190994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11191092:-1
position: 11191092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11188186-11188544:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11181481-11182321:-1:exon

rita1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rita1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RBPJ-interacting and tubulin-associated protein 1
translation: MSADIVITAIQACRTSHKGRSRYRVGAKTSYVDETLFGHSSKVQSSIDEFDPPWVSASPAATQRPLLWSPSTQTRPNGDVSQVPIPLKSGRTPIKNKYRLKSCKPSYCDESLFGPRQDDAGWEAPWTVKDDKIKIRPLLWSPTPRKISSSAFRSTSNQLPSDGRNPVKPHHPTTRKSSTDFITEYKDKTDYWRRPDSNNASPNDTPGRRRSQSLTRKDNSMKEIVKEDSTLNAPRNIKPLRGRPISASAVHSGLQHSLRTRSGSLSDSATANRLNTTNSVKLNPPWKY
SIO_010081: rita1
subclass of: SO_0000673
so part of: rita1
location: complement(join(11181751..11182321,11188186..11188481))
location: region:11181751-11188481:-1
so has part: feature:11188186-11188481:-1:exon
so has part: feature:11181751-11182321:-1:exon

XP_032899043.1
type: Protein
SIO_000068: ncbiprotein

position:11181751:-1
position: 11181751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11188481:-1
position: 11188481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11188186-11188481:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11181751-11182321:-1:exon

rita1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: rita1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RBPJ-interacting and tubulin-associated protein 1
translation: MSADIVITAIQACRTSHKGRSRYRVGAKTSYVDETLFGHSSKVQSSIDEFDPPWVSASPAATQRPLLWSPSTQTRPNGDVSQVPIPLKSGRTPIKNKYRLKSCKPSYCDESLFGPRQDDAGWEAPWTVKDDKIKIRPLLWSPTPRKISSSAFRSTSNQLPSDGRNPVKPHHPTTRKSSTDFITEYKDKTDYWRRPDSNNASPNDTPGRRRSQSLTRKDNSMKEIVKEDSTLNAPRNIKPLRGRPISASAVHSGLQHSLRTRSGSLSDSATANRLNTTNSVKLNPPWKY
SIO_010081: rita1
subclass of: SO_0000673
so part of: rita1
location: complement(join(11181751..11182321,11188186..11188481))
location: region:11181751-11188481:-1
so has part: feature:11188186-11188481:-1:exon
so has part: feature:11181751-11182321:-1:exon

XP_032899044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11188186-11188481:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11181751-11182321:-1:exon

rita1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 386614
gene: rita1
product: RBPJ interacting and tubulin associated 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004415681.1
SIO_010081: rita1
so part of: rita1
location: complement(join(11182292..11182321,11187924..11187989,11190994..11191092,11192844..11193173))
location: region:11182292-11193173:-1
so has part: feature:11192844-11193173:-1:exon
so has part: feature:11190994-11191092:-1:exon
so has part: feature:11187924-11187989:-1:exon
so has part: feature:11182292-11182321:-1:exon

position:11182292:-1
position: 11182292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11192844-11193173:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11190994-11191092:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11187924-11187989:-1:exon

position:11187924:-1
position: 11187924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11187989:-1
position: 11187989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11182292-11182321:-1:exon

ddx54
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: ddx54
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11193278..11230876
location: region:11193278-11230876:1
so has part: feature:11193278-11230876:1:exon
subclass of: SO_0000010

116987260
type: Gene
SIO_000068: ncbigene

position:11193278:1
position: 11193278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11230876:1
position: 11230876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11193278-11230876:1:exon

ddx54
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: ddx54
product: DEAD-box helicase 54
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_033043140.1
SIO_010081: ddx54
subclass of: SO_0000673
so part of: ddx54
location: join(11193278..11193555,11197325..11197451,11199813..11199883,11201854..11202042,11202547..11202596,11202701..11202742,11203918..11204013,11207658..11207779,11210232..11210293,11211438..11211569,11212529..11212739,11214992..11215126,11215600..11215821,11216966..11217039,11217128..11217325,11218538..11218677,11219862..11219975,11224500..11224601,11226641..11226741,11229546..11230876)
location: region:11193278-11230876:1
so has part: feature:11193278-11193555:1:exon
so has part: feature:11197325-11197451:1:exon
so has part: feature:11199813-11199883:1:exon
so has part: feature:11201854-11202042:1:exon
so has part: feature:11202547-11202596:1:exon
so has part: feature:11202701-11202742:1:exon
so has part: feature:11203918-11204013:1:exon
so has part: feature:11207658-11207779:1:exon
so has part: feature:11210232-11210293:1:exon
so has part: feature:11211438-11211569:1:exon
so has part: feature:11212529-11212739:1:exon
so has part: feature:11214992-11215126:1:exon
so has part: feature:11215600-11215821:1:exon
so has part: feature:11216966-11217039:1:exon
so has part: feature:11217128-11217325:1:exon
so has part: feature:11218538-11218677:1:exon
so has part: feature:11219862-11219975:1:exon
so has part: feature:11224500-11224601:1:exon
so has part: feature:11226641-11226741:1:exon
so has part: feature:11229546-11230876:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11193278-11193555:1:exon

position:11193555:1
position: 11193555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11197325-11197451:1:exon

position:11197325:1
position: 11197325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11197451:1
position: 11197451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11199813-11199883:1:exon

position:11199813:1
position: 11199813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11199883:1
position: 11199883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11201854-11202042:1:exon

position:11201854:1
position: 11201854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11202042:1
position: 11202042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11202547-11202596:1:exon

position:11202547:1
position: 11202547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11202596:1
position: 11202596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11202701-11202742:1:exon

position:11202701:1
position: 11202701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11202742:1
position: 11202742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11203918-11204013:1:exon

position:11203918:1
position: 11203918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11204013:1
position: 11204013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11207658-11207779:1:exon

position:11207658:1
position: 11207658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11207779:1
position: 11207779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11210232-11210293:1:exon

position:11210232:1
position: 11210232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11210293:1
position: 11210293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11211438-11211569:1:exon

position:11211438:1
position: 11211438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11211569:1
position: 11211569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11212529-11212739:1:exon

position:11212529:1
position: 11212529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11212739:1
position: 11212739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11214992-11215126:1:exon

position:11214992:1
position: 11214992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11215126:1
position: 11215126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11215600-11215821:1:exon

position:11215600:1
position: 11215600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11215821:1
position: 11215821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:11216966-11217039:1:exon

position:11216966:1
position: 11216966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11217039:1
position: 11217039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:11217128-11217325:1:exon

position:11217128:1
position: 11217128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11217325:1
position: 11217325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:11218538-11218677:1:exon

position:11218538:1
position: 11218538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11218677:1
position: 11218677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:11219862-11219975:1:exon

position:11219862:1
position: 11219862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11219975:1
position: 11219975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:11224500-11224601:1:exon

position:11224500:1
position: 11224500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11224601:1
position: 11224601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:11226641-11226741:1:exon

position:11226641:1
position: 11226641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11226741:1
position: 11226741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:11229546-11230876:1:exon

position:11229546:1
position: 11229546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ddx54
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: ddx54
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent RNA helicase DDX54
translation: MAQKKKQKKQQQQRPLKPRPRNARRRSQRNRLDVEVESDGGEFDLVPSMVDDAPVVNKHNIKSLPSFPSADCPSDVEPDTREMVREQNKKKKKSGGFQSMGLSFPVFKGIMKKGYKVPTPIQRKAIPVILDGKDVVAMARTGSGKTAAFLIPLFEQLKVHHSQTGARALIITPTRELALQTMKFTKELGKFAGFKTALILGGDKMEDQFAALHENPDIIIGTPGRLMHVVVEMNLKLHKVEYVVFDEADRLFEMGFAEHLQEIIQRLPESRQTLLFSATLPKQLVEFARAGLTEPVLIRLDVDTKLNDQLRLAFFHVRSDDKSSVLLYLLRNVIKPQEQTVVFVATKHHVEYIKEMITRQGIECSYIYSALDQTARKINIGKFVHRKCMVMIVTDVAARGIDIPMLDNVINYNFPSKAKLFLHRVGRVARAGRSGTSYSLVALDEIPYVYDLHLFLGRPLKFASQNENPEDTDGLYGRVPQSIIDDEESLLIADYKASLDLQNLKRVSENAYAQYLKSRPTPSPESIKRVREMNFVTLGIHSLFGVSLEDTELQRLKVINNIKNYKAKSTIFEVNSTNKSPASETMRMTRNKQRNSIHKFQQSRQEKEASASKNVPKPEEADPSAREDADDDNIEIVFSEVMGRKRKNKESSDPVSQKKTGCCKDDQFYIPYQPKDFNSERGLSLSGEGTTFEQQASGAVLDLMGDEAENMQKQKQLLKWDRKKKRFIRDAGKQSKKIKTESGRYINASYKKNIYEEWKKKYKVDERLSDDEAENVQGNHMGKKRGHGGRGNLRSFSRKPSQQGVKSELKTKTEILKERKRMERNKFLQRGGMKKLKHRNRHRVREMQSMAFGRGRGKGKMRKKM
SIO_010081: ddx54
subclass of: SO_0000673
so part of: ddx54
location: join(11193382..11193555,11197325..11197451,11199813..11199883,11201854..11202042,11202547..11202596,11202701..11202742,11203918..11204013,11207658..11207779,11210232..11210293,11211438..11211569,11212529..11212739,11214992..11215126,11215600..11215821,11216966..11217039,11217128..11217325,11218538..11218677,11219862..11219975,11224500..11224601,11226641..11226741,11229546..11229781)
location: region:11193382-11229781:1
so has part: feature:11193382-11193555:1:exon
so has part: feature:11197325-11197451:1:exon
so has part: feature:11199813-11199883:1:exon
so has part: feature:11201854-11202042:1:exon
so has part: feature:11202547-11202596:1:exon
so has part: feature:11202701-11202742:1:exon
so has part: feature:11203918-11204013:1:exon
so has part: feature:11207658-11207779:1:exon
so has part: feature:11210232-11210293:1:exon
so has part: feature:11211438-11211569:1:exon
so has part: feature:11212529-11212739:1:exon
so has part: feature:11214992-11215126:1:exon
so has part: feature:11215600-11215821:1:exon
so has part: feature:11216966-11217039:1:exon
so has part: feature:11217128-11217325:1:exon
so has part: feature:11218538-11218677:1:exon
so has part: feature:11219862-11219975:1:exon
so has part: feature:11224500-11224601:1:exon
so has part: feature:11226641-11226741:1:exon
so has part: feature:11229546-11229781:1:exon

XP_032899031.1
type: Protein
SIO_000068: ncbiprotein

position:11193382:1
position: 11193382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11229781:1
position: 11229781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11193382-11193555:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11197325-11197451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11199813-11199883:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11201854-11202042:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11202547-11202596:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11202701-11202742:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11203918-11204013:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11207658-11207779:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11210232-11210293:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11211438-11211569:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11212529-11212739:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11214992-11215126:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11215600-11215821:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11216966-11217039:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11217128-11217325:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11218538-11218677:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11219862-11219975:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:11224500-11224601:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:11226641-11226741:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:11229546-11229781:1:exon

cfap73
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: cfap73
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11230980..11262201)
location: region:11230980-11262201:-1
so has part: feature:11230980-11262201:-1:exon
subclass of: SO_0000010

116987265
type: Gene
SIO_000068: ncbigene

position:11230980:-1
position: 11230980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11262201:-1
position: 11262201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11230980-11262201:-1:exon

cfap73
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: cfap73
product: cilia and flagella associated protein 73, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033043151.1
SIO_010081: cfap73
subclass of: SO_0000673
so part of: cfap73
location: complement(join(11230980..11232651,11232790..11232945,11239736..11239957,11245366..11245566,11249004..11249108,11249634..11249736,11261900..11262201))
location: region:11230980-11262201:-1
so has part: feature:11261900-11262201:-1:exon
so has part: feature:11249634-11249736:-1:exon
so has part: feature:11249004-11249108:-1:exon
so has part: feature:11245366-11245566:-1:exon
so has part: feature:11239736-11239957:-1:exon
so has part: feature:11232790-11232945:-1:exon
so has part: feature:11230980-11232651:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11261900-11262201:-1:exon

position:11261900:-1
position: 11261900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11249634-11249736:-1:exon

position:11249634:-1
position: 11249634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11249736:-1
position: 11249736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11249004-11249108:-1:exon

position:11249004:-1
position: 11249004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11249108:-1
position: 11249108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11245366-11245566:-1:exon

position:11245366:-1
position: 11245366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11245566:-1
position: 11245566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11239736-11239957:-1:exon

position:11239736:-1
position: 11239736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11239957:-1
position: 11239957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11232790-11232945:-1:exon

position:11232790:-1
position: 11232790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11232945:-1
position: 11232945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11230980-11232651:-1:exon

position:11232651:-1
position: 11232651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

cfap73
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: cfap73
product: cilia and flagella associated protein 73, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_033043150.1
SIO_010081: cfap73
subclass of: SO_0000673
so part of: cfap73
location: complement(join(11230980..11232651,11232790..11232945,11239736..11239957,11245366..11245566,11249004..11249108,11249634..11249739,11261900..11262201))
location: region:11230980-11262201:-1
so has part: feature:11261900-11262201:-1:exon
so has part: feature:11249634-11249739:-1:exon
so has part: feature:11249004-11249108:-1:exon
so has part: feature:11245366-11245566:-1:exon
so has part: feature:11239736-11239957:-1:exon
so has part: feature:11232790-11232945:-1:exon
so has part: feature:11230980-11232651:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11261900-11262201:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11249634-11249739:-1:exon

position:11249739:-1
position: 11249739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11249004-11249108:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11245366-11245566:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11239736-11239957:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11232790-11232945:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11230980-11232651:-1:exon

cfap73
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: cfap73
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cilia- and flagella-associated protein 73 isoform X2
translation: MDEFEDQFRTINYEKLPIIPDPDTFYVNNATRILEKRRELSEVEEDLVNQREEFHVKLRVLKLRREDLLEKEEELKLSILKFDKFLKENDAKRLRAKSKQMSENDLQRQKERDIMKMEKELDFQITQRGKLKKKTESHAVYPSFLENVIKTGDEFQDIGTVTSRFEALLHTYDLLVRRYQENQETIKTIKSNLNNFIKTKNNENLKYQNMIAGLKIRLEAAKTKTVKWESIWVHIQNTAAKKTLTLGMVKMAIFNLYAHIKEAELDLNIAIEDTTKQLSVVQEYIMQLREILHEFKRMES
SIO_010081: cfap73
subclass of: SO_0000673
so part of: cfap73
location: complement(join(11232589..11232651,11232790..11232945,11239736..11239957,11245366..11245566,11249004..11249108,11249634..11249736,11261900..11261952))
location: region:11232589-11261952:-1
so has part: feature:11261900-11261952:-1:exon
so has part: feature:11249634-11249736:-1:exon
so has part: feature:11249004-11249108:-1:exon
so has part: feature:11245366-11245566:-1:exon
so has part: feature:11239736-11239957:-1:exon
so has part: feature:11232790-11232945:-1:exon
so has part: feature:11232589-11232651:-1:exon

XP_032899042.1
type: Protein
SIO_000068: ncbiprotein

position:11232589:-1
position: 11232589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11261952:-1
position: 11261952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11261900-11261952:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11249634-11249736:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11249004-11249108:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11245366-11245566:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11239736-11239957:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11232790-11232945:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11232589-11232651:-1:exon

cfap73
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: cfap73
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cilia- and flagella-associated protein 73 isoform X1
translation: MDEFEDQFRTINYEKLPIRIPDPDTFYVNNATRILEKRRELSEVEEDLVNQREEFHVKLRVLKLRREDLLEKEEELKLSILKFDKFLKENDAKRLRAKSKQMSENDLQRQKERDIMKMEKELDFQITQRGKLKKKTESHAVYPSFLENVIKTGDEFQDIGTVTSRFEALLHTYDLLVRRYQENQETIKTIKSNLNNFIKTKNNENLKYQNMIAGLKIRLEAAKTKTVKWESIWVHIQNTAAKKTLTLGMVKMAIFNLYAHIKEAELDLNIAIEDTTKQLSVVQEYIMQLREILHEFKRMES
SIO_010081: cfap73
subclass of: SO_0000673
so part of: cfap73
location: complement(join(11232589..11232651,11232790..11232945,11239736..11239957,11245366..11245566,11249004..11249108,11249634..11249739,11261900..11261952))
location: region:11232589-11261952:-1
so has part: feature:11261900-11261952:-1:exon
so has part: feature:11249634-11249739:-1:exon
so has part: feature:11249004-11249108:-1:exon
so has part: feature:11245366-11245566:-1:exon
so has part: feature:11239736-11239957:-1:exon
so has part: feature:11232790-11232945:-1:exon
so has part: feature:11232589-11232651:-1:exon

XP_032899041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11261900-11261952:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11249634-11249739:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11249004-11249108:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11245366-11245566:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11239736-11239957:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11232790-11232945:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11232589-11232651:-1:exon

LOC116987267
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987267
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11263879..11314453)
location: region:11263879-11314453:-1
so has part: feature:11263879-11314453:-1:exon
subclass of: SO_0000010

116987267
type: Gene
SIO_000068: ncbigene

position:11263879:-1
position: 11263879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11314453:-1
position: 11314453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11263879-11314453:-1:exon

LOC116987267
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987267
product: protein NipSnap homolog 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_033043154.1
SIO_010081: LOC116987267
subclass of: SO_0000673
so part of: LOC116987267
location: complement(join(11263879..11265006,11269705..11269788,11272414..11272508,11286195..11286226,11289055..11289195,11295989..11296059,11305461..11305555,11311520..11311565,11311662..11311795,11314263..11314453))
location: region:11263879-11314453:-1
so has part: feature:11314263-11314453:-1:exon
so has part: feature:11311662-11311795:-1:exon
so has part: feature:11311520-11311565:-1:exon
so has part: feature:11305461-11305555:-1:exon
so has part: feature:11295989-11296059:-1:exon
so has part: feature:11289055-11289195:-1:exon
so has part: feature:11286195-11286226:-1:exon
so has part: feature:11272414-11272508:-1:exon
so has part: feature:11269705-11269788:-1:exon
so has part: feature:11263879-11265006:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11314263-11314453:-1:exon

position:11314263:-1
position: 11314263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11311662-11311795:-1:exon

position:11311662:-1
position: 11311662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11311795:-1
position: 11311795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11311520-11311565:-1:exon

position:11311520:-1
position: 11311520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11311565:-1
position: 11311565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11305461-11305555:-1:exon

position:11305461:-1
position: 11305461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11305555:-1
position: 11305555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11295989-11296059:-1:exon

position:11295989:-1
position: 11295989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11296059:-1
position: 11296059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11289055-11289195:-1:exon

position:11289055:-1
position: 11289055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11289195:-1
position: 11289195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11286195-11286226:-1:exon

position:11286195:-1
position: 11286195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11286226:-1
position: 11286226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11272414-11272508:-1:exon

position:11272414:-1
position: 11272414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11272508:-1
position: 11272508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11269705-11269788:-1:exon

position:11269705:-1
position: 11269705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11269788:-1
position: 11269788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11263879-11265006:-1:exon

position:11265006:-1
position: 11265006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116987267
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987267
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein NipSnap homolog 1-like
translation: MAAMWPARMWKSPALLARSCVALTFTRANSKGEQNDKGWFRSLFVHRVKQRKDAHSNLLSKKETSSLYKMQFHNVKPECLDAYNTLSEQMLKKLHDDSDYPCEIVGSWNTWYGEQDQAVHLWRFSGGYPAMTDAMEKLKQNKEYLEFRRERSAMLLARKNQILLEFSFWNEPQARPGPNIYELRTYYLKPGTMIEWGNNWARAIRFRQENSEAVGGFFSLIGDLYVVHHIWAYKDLESRHETRNAAWQKAGWDECVYYTVPLIRNMESRIMIPLKVSTLQ
SIO_010081: LOC116987267
subclass of: SO_0000673
so part of: LOC116987267
location: complement(join(11264942..11265006,11269705..11269788,11272414..11272508,11286195..11286226,11289055..11289195,11295989..11296059,11305461..11305555,11311520..11311565,11311662..11311795,11314263..11314342))
location: region:11264942-11314342:-1
so has part: feature:11314263-11314342:-1:exon
so has part: feature:11311662-11311795:-1:exon
so has part: feature:11311520-11311565:-1:exon
so has part: feature:11305461-11305555:-1:exon
so has part: feature:11295989-11296059:-1:exon
so has part: feature:11289055-11289195:-1:exon
so has part: feature:11286195-11286226:-1:exon
so has part: feature:11272414-11272508:-1:exon
so has part: feature:11269705-11269788:-1:exon
so has part: feature:11264942-11265006:-1:exon

XP_032899045.1
type: Protein
SIO_000068: ncbiprotein

position:11264942:-1
position: 11264942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11314342:-1
position: 11314342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11314263-11314342:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11311662-11311795:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11311520-11311565:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11305461-11305555:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11295989-11296059:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11289055-11289195:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11286195-11286226:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11272414-11272508:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11269705-11269788:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11264942-11265006:-1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(11464811..11464882)
location: region:11464811-11464882:-1
so has part: feature:11464811-11464882:-1:exon
subclass of: SO_0000663

116987715
type: Gene
SIO_000068: ncbigene

position:11464811:-1
position: 11464811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11464882:-1
position: 11464882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11464811-11464882:-1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 386614
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(11464848..11464850),aa:Ala, seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: complement(11464811..11464882)
location: region:11464811-11464882:-1
so has part: feature:11464811-11464882:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11464811-11464882:-1:exon

LOC116987198
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987198
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11575388..11590449
location: region:11575388-11590449:1
so has part: feature:11575388-11590449:1:exon
subclass of: SO_0000011

116987198
type: Gene
SIO_000068: ncbigene

position:11575388:1
position: 11575388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11590449:1
position: 11590449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11575388-11590449:1:exon

LOC116987198
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987198
product: uncharacterized LOC116987198
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_004415662.1
SIO_010081: LOC116987198
subclass of: SO_0000673
so part of: LOC116987198
location: join(11575388..11575525,11584420..11584423,11590438..11590449)
location: region:11575388-11590449:1
so has part: feature:11575388-11575525:1:exon
so has part: feature:11584420-11584423:1:exon
so has part: feature:11590438-11590449:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11575388-11575525:1:exon

position:11575525:1
position: 11575525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11584420-11584423:1:exon

position:11584420:1
position: 11584420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11584423:1
position: 11584423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11590438-11590449:1:exon

position:11590438:1
position: 11590438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987199
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987199
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11678933..11689300
location: region:11678933-11689300:1
so has part: feature:11678933-11689300:1:exon
subclass of: SO_0000011

116987199
type: Gene
SIO_000068: ncbigene

position:11678933:1
position: 11678933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11689300:1
position: 11689300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11678933-11689300:1:exon

LOC116987199
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987199
product: uncharacterized LOC116987199
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004415663.1
SIO_010081: LOC116987199
subclass of: SO_0000673
so part of: LOC116987199
location: join(11678933..11678978,11679827..11679978,11688897..11689300)
location: region:11678933-11689300:1
so has part: feature:11678933-11678978:1:exon
so has part: feature:11679827-11679978:1:exon
so has part: feature:11688897-11689300:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11678933-11678978:1:exon

position:11678978:1
position: 11678978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11679827-11679978:1:exon

position:11679827:1
position: 11679827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11679978:1
position: 11679978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11688897-11689300:1:exon

position:11688897:1
position: 11688897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 11742899..11742970
location: region:11742899-11742970:1
so has part: feature:11742899-11742970:1:exon
subclass of: SO_0000663

116987710
type: Gene
SIO_000068: ncbigene

position:11742899:1
position: 11742899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11742970:1
position: 11742970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11742899-11742970:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 386614
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:11742931..11742933,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 11742899..11742970
location: region:11742899-11742970:1
so has part: feature:11742899-11742970:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11742899-11742970:1:exon

cabp7
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: cabp7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11802573..11887778
location: region:11802573-11887778:1
so has part: feature:11802573-11887778:1:exon
subclass of: SO_0000010

116987268
type: Gene
SIO_000068: ncbigene

position:11802573:1
position: 11802573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11887778:1
position: 11887778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11802573-11887778:1:exon

cabp7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: cabp7
product: calcium binding protein 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033043155.1
SIO_010081: cabp7
subclass of: SO_0000673
so part of: cabp7
location: join(11802573..11802833,11803929..11804072,11845979..11846091,11883512..11883665,11887347..11887778)
location: region:11802573-11887778:1
so has part: feature:11802573-11802833:1:exon
so has part: feature:11803929-11804072:1:exon
so has part: feature:11845979-11846091:1:exon
so has part: feature:11883512-11883665:1:exon
so has part: feature:11887347-11887778:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11802573-11802833:1:exon

position:11802833:1
position: 11802833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11803929-11804072:1:exon

position:11803929:1
position: 11803929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11804072:1
position: 11804072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11845979-11846091:1:exon

position:11845979:1
position: 11845979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11846091:1
position: 11846091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11883512-11883665:1:exon

position:11883512:1
position: 11883512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11883665:1
position: 11883665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11887347-11887778:1:exon

position:11887347:1
position: 11887347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cabp7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: cabp7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium-binding protein 7
translation: MPMHPVTATLMYRGIYTIPDILTNQDPIDIPEDELEEIREAFKVFDRDGNGFISKQELGMAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSSAAIPEKFHGTEFDNVFWKCDMQRMTVDELKRLLYEAFCEHLSMKDIENIIMTEEASHVENPDECPVDIDTCSTQQIKQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK
SIO_010081: cabp7
subclass of: SO_0000673
so part of: cabp7
location: join(11802725..11802833,11803929..11804072,11845979..11846091,11883512..11883665,11887347..11887474)
location: region:11802725-11887474:1
so has part: feature:11802725-11802833:1:exon
so has part: feature:11803929-11804072:1:exon
so has part: feature:11845979-11846091:1:exon
so has part: feature:11883512-11883665:1:exon
so has part: feature:11887347-11887474:1:exon

XP_032899046.1
type: Protein
SIO_000068: ncbiprotein

position:11802725:1
position: 11802725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11887474:1
position: 11887474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11802725-11802833:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11803929-11804072:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11845979-11846091:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11883512-11883665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11887347-11887474:1:exon

LOC116987269
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987269
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11868532..11873514)
location: region:11868532-11873514:-1
so has part: feature:11868532-11873514:-1:exon
subclass of: SO_0000011

116987269
type: Gene
SIO_000068: ncbigene

position:11868532:-1
position: 11868532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11873514:-1
position: 11873514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11868532-11873514:-1:exon

LOC116987269
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 386614
nc RNA class: lncRNA
gene: LOC116987269
product: uncharacterized LOC116987269
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004415682.1
SIO_010081: LOC116987269
subclass of: SO_0000673
so part of: LOC116987269
location: complement(join(11868532..11868561,11871587..11871590,11873496..11873514))
location: region:11868532-11873514:-1
so has part: feature:11873496-11873514:-1:exon
so has part: feature:11871587-11871590:-1:exon
so has part: feature:11868532-11868561:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11873496-11873514:-1:exon

position:11873496:-1
position: 11873496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11871587-11871590:-1:exon

position:11871587:-1
position: 11871587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11871590:-1
position: 11871590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11868532-11868561:-1:exon

position:11868561:-1
position: 11868561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

zmat5
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: zmat5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11918708..11939590)
location: region:11918708-11939590:-1
so has part: feature:11918708-11939590:-1:exon
subclass of: SO_0000010

116987270
type: Gene
SIO_000068: ncbigene

position:11918708:-1
position: 11918708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11939590:-1
position: 11939590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11918708-11939590:-1:exon

zmat5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: zmat5
product: zinc finger matrin-type 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_033043157.1
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918708..11918892,11927207..11927300,11933514..11933594,11935735..11935797,11939344..11939590))
location: region:11918708-11939590:-1
so has part: feature:11939344-11939590:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11927207-11927300:-1:exon
so has part: feature:11918708-11918892:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939590:-1:exon

position:11939344:-1
position: 11939344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

position:11935735:-1
position: 11935735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11935797:-1
position: 11935797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

position:11933514:-1
position: 11933514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11933594:-1
position: 11933594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11927207-11927300:-1:exon

position:11927207:-1
position: 11927207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11927300:-1
position: 11927300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11918708-11918892:-1:exon

position:11918892:-1
position: 11918892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

zmat5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: zmat5
product: zinc finger matrin-type 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_033043156.1
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918708..11918892,11927207..11927303,11933514..11933594,11935735..11935797,11939344..11939590))
location: region:11918708-11939590:-1
so has part: feature:11939344-11939590:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11927207-11927303:-1:exon
so has part: feature:11918708-11918892:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939590:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11927207-11927303:-1:exon

position:11927303:-1
position: 11927303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11918708-11918892:-1:exon

zmat5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: zmat5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger matrin-type protein 5 isoform X2
translation: MGKTYFCDYCGRSFQDNLHNRKKHLQGVQHQRAKKFWFDSFRDNATILVEELAKKPCRKFLQSGQCDFGANCKFSHMTDEDIQKLRQKVEENTVEQDDRPNPNIDEWLAKRAKRKENHLHTSDVEVEKEEDVPIVYWLPPGYNSTHELPPSLHPPPPGGWKTALNVEWG
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918748..11918892,11927207..11927300,11933514..11933594,11935735..11935797,11939344..11939470))
location: region:11918748-11939470:-1
so has part: feature:11939344-11939470:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11927207-11927300:-1:exon
so has part: feature:11918748-11918892:-1:exon

XP_032899048.1
type: Protein
SIO_000068: ncbiprotein

position:11918748:-1
position: 11918748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11939470:-1
position: 11939470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939470:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11927207-11927300:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11918748-11918892:-1:exon

zmat5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: zmat5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger matrin-type protein 5 isoform X1
translation: MGKTYFCDYCGRSFQDNLHNRKKHLQGVQHQRAKKFWFDSFRDNATILVEELAKKPCRKFLQSGQCDFGANCKFSHMTDEDIQKLRQKVEEENTVEQDDRPNPNIDEWLAKRAKRKENHLHTSDVEVEKEEDVPIVYWLPPGYNSTHELPPSLHPPPPGGWKTALNVEWG
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918748..11918892,11927207..11927303,11933514..11933594,11935735..11935797,11939344..11939470))
location: region:11918748-11939470:-1
so has part: feature:11939344-11939470:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11927207-11927303:-1:exon
so has part: feature:11918748-11918892:-1:exon

XP_032899047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939470:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11927207-11927303:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11918748-11918892:-1:exon

zmat5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: zmat5
product: zinc finger matrin-type 5, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_033043159.1
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918750..11918892,11927207..11927300,11930876..11930931,11933514..11933594,11935735..11935797,11939344..11939590))
location: region:11918750-11939590:-1
so has part: feature:11939344-11939590:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11930876-11930931:-1:exon
so has part: feature:11927207-11927300:-1:exon
so has part: feature:11918750-11918892:-1:exon

position:11918750:-1
position: 11918750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939590:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11930876-11930931:-1:exon

position:11930876:-1
position: 11930876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11930931:-1
position: 11930931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11927207-11927300:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11918750-11918892:-1:exon

zmat5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: zmat5
product: zinc finger matrin-type 5, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_033043158.1
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918750..11918892,11927207..11927303,11930876..11930931,11933514..11933594,11935735..11935797,11939344..11939590))
location: region:11918750-11939590:-1
so has part: feature:11939344-11939590:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11930876-11930931:-1:exon
so has part: feature:11927207-11927303:-1:exon
so has part: feature:11918750-11918892:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939590:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11930876-11930931:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11927207-11927303:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11918750-11918892:-1:exon

zmat5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: zmat5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger matrin-type protein 5 isoform X4
translation: MGKTYFCDYCGRSFQDNLHNRKKHLQGVQHQRAKKFWFDSFRDNATILVEELAKKPCRKFLQSGQCDFGANCKFSHMTDEDIQKLRQKVEEPTGLISSTLEYYIENPSMKIQLSKMTDQTLTLMNGWQREPKEKKIICTPVTWK
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918879..11918892,11927207..11927300,11930876..11930931,11933514..11933594,11935735..11935797,11939344..11939470))
location: region:11918879-11939470:-1
so has part: feature:11939344-11939470:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11930876-11930931:-1:exon
so has part: feature:11927207-11927300:-1:exon
so has part: feature:11918879-11918892:-1:exon

XP_032899050.1
type: Protein
SIO_000068: ncbiprotein

position:11918879:-1
position: 11918879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939470:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11930876-11930931:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11927207-11927300:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11918879-11918892:-1:exon

zmat5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: zmat5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger matrin-type protein 5 isoform X3
translation: MGKTYFCDYCGRSFQDNLHNRKKHLQGVQHQRAKKFWFDSFRDNATILVEELAKKPCRKFLQSGQCDFGANCKFSHMTDEDIQKLRQKVEEPTGLISSTLEYYIENPSMKKIQLSKMTDQTLTLMNGWQREPKEKKIICTPVTWK
SIO_010081: zmat5
subclass of: SO_0000673
so part of: zmat5
location: complement(join(11918879..11918892,11927207..11927303,11930876..11930931,11933514..11933594,11935735..11935797,11939344..11939470))
location: region:11918879-11939470:-1
so has part: feature:11939344-11939470:-1:exon
so has part: feature:11935735-11935797:-1:exon
so has part: feature:11933514-11933594:-1:exon
so has part: feature:11930876-11930931:-1:exon
so has part: feature:11927207-11927303:-1:exon
so has part: feature:11918879-11918892:-1:exon

XP_032899049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11939344-11939470:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11935735-11935797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11933514-11933594:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11930876-11930931:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11927207-11927303:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11918879-11918892:-1:exon

LOC116987273
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: LOC116987273
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11939685..11943894
location: region:11939685-11943894:1
so has part: feature:11939685-11943894:1:exon
subclass of: SO_0000010

116987273
type: Gene
SIO_000068: ncbigene

position:11939685:1
position: 11939685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11943894:1
position: 11943894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11939685-11943894:1:exon

LOC116987273
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: LOC116987273
product: cytochrome b-c1 complex subunit 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_033043160.1
SIO_010081: LOC116987273
subclass of: SO_0000673
so part of: LOC116987273
location: join(11939685..11939879,11943638..11943894)
location: region:11939685-11943894:1
so has part: feature:11939685-11939879:1:exon
so has part: feature:11943638-11943894:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11939685-11939879:1:exon

position:11939879:1
position: 11939879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11943638-11943894:1:exon

position:11943638:1
position: 11943638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116987273
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: LOC116987273
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome b-c1 complex subunit 9
translation: MALVRKVYNLLFKRTSTFALSIVVGAVVFERVFDQAGDMIFEHINHGKLWKHIKHNYEIKQDE
SIO_010081: LOC116987273
subclass of: SO_0000673
so part of: LOC116987273
location: join(11939739..11939879,11943638..11943688)
location: region:11939739-11943688:1
so has part: feature:11939739-11939879:1:exon
so has part: feature:11943638-11943688:1:exon

XP_032899051.1
type: Protein
SIO_000068: ncbiprotein

position:11939739:1
position: 11939739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11943688:1
position: 11943688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11939739-11939879:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11943638-11943688:1:exon

ascc2
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: ascc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11947769..12003747)
location: region:11947769-12003747:-1
so has part: feature:11947769-12003747:-1:exon
subclass of: SO_0000010

116987274
type: Gene
SIO_000068: ncbigene

position:11947769:-1
position: 11947769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12003747:-1
position: 12003747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11947769-12003747:-1:exon

ascc2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: ascc2
product: activating signal cointegrator 1 complex subunit 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033043162.1
SIO_010081: ascc2
subclass of: SO_0000673
so part of: ascc2
location: complement(join(11947769..11948949,11954653..11954747,11957150..11957228,11960016..11960231,11963311..11963430,11966339..11966544,11968486..11968675,11971539..11971613,11973063..11973131,11975468..11975575,11976887..11976961,11979360..11979472,11981636..11981746,11982801..11982868,11982967..11983096,11984520..11984690,11985319..11985477,11987080..11987175,12003604..12003747))
location: region:11947769-12003747:-1
so has part: feature:12003604-12003747:-1:exon
so has part: feature:11987080-11987175:-1:exon
so has part: feature:11985319-11985477:-1:exon
so has part: feature:11984520-11984690:-1:exon
so has part: feature:11982967-11983096:-1:exon
so has part: feature:11982801-11982868:-1:exon
so has part: feature:11981636-11981746:-1:exon
so has part: feature:11979360-11979472:-1:exon
so has part: feature:11976887-11976961:-1:exon
so has part: feature:11975468-11975575:-1:exon
so has part: feature:11973063-11973131:-1:exon
so has part: feature:11971539-11971613:-1:exon
so has part: feature:11968486-11968675:-1:exon
so has part: feature:11966339-11966544:-1:exon
so has part: feature:11963311-11963430:-1:exon
so has part: feature:11960016-11960231:-1:exon
so has part: feature:11957150-11957228:-1:exon
so has part: feature:11954653-11954747:-1:exon
so has part: feature:11947769-11948949:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12003604-12003747:-1:exon

position:12003604:-1
position: 12003604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11987080-11987175:-1:exon

position:11987080:-1
position: 11987080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11987175:-1
position: 11987175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11985319-11985477:-1:exon

position:11985319:-1
position: 11985319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11985477:-1
position: 11985477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11984520-11984690:-1:exon

position:11984520:-1
position: 11984520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11984690:-1
position: 11984690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11982967-11983096:-1:exon

position:11982967:-1
position: 11982967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11983096:-1
position: 11983096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11982801-11982868:-1:exon

position:11982801:-1
position: 11982801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11982868:-1
position: 11982868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11981636-11981746:-1:exon

position:11981636:-1
position: 11981636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11981746:-1
position: 11981746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11979360-11979472:-1:exon

position:11979360:-1
position: 11979360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11979472:-1
position: 11979472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11976887-11976961:-1:exon

position:11976887:-1
position: 11976887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11976961:-1
position: 11976961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11975468-11975575:-1:exon

position:11975468:-1
position: 11975468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11975575:-1
position: 11975575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11973063-11973131:-1:exon

position:11973063:-1
position: 11973063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11973131:-1
position: 11973131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11971539-11971613:-1:exon

position:11971539:-1
position: 11971539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11971613:-1
position: 11971613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11968486-11968675:-1:exon

position:11968486:-1
position: 11968486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11968675:-1
position: 11968675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:11966339-11966544:-1:exon

position:11966339:-1
position: 11966339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11966544:-1
position: 11966544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:11963311-11963430:-1:exon

position:11963311:-1
position: 11963311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11963430:-1
position: 11963430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:11960016-11960231:-1:exon

position:11960016:-1
position: 11960016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11960231:-1
position: 11960231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:11957150-11957228:-1:exon

position:11957150:-1
position: 11957150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11957228:-1
position: 11957228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:11954653-11954747:-1:exon

position:11954653:-1
position: 11954653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11954747:-1
position: 11954747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:11947769-11948949:-1:exon

position:11948949:-1
position: 11948949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ascc2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: ascc2
product: activating signal cointegrator 1 complex subunit 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_033043161.1
SIO_010081: ascc2
subclass of: SO_0000673
so part of: ascc2
location: complement(join(11947769..11948949,11954653..11954747,11957138..11957228,11960016..11960231,11963311..11963430,11966339..11966544,11968486..11968675,11971539..11971613,11973063..11973131,11975468..11975575,11976887..11976961,11979360..11979472,11981636..11981746,11982801..11982868,11982967..11983096,11984520..11984690,11985319..11985477,11987080..11987175,12003604..12003747))
location: region:11947769-12003747:-1
so has part: feature:12003604-12003747:-1:exon
so has part: feature:11987080-11987175:-1:exon
so has part: feature:11985319-11985477:-1:exon
so has part: feature:11984520-11984690:-1:exon
so has part: feature:11982967-11983096:-1:exon
so has part: feature:11982801-11982868:-1:exon
so has part: feature:11981636-11981746:-1:exon
so has part: feature:11979360-11979472:-1:exon
so has part: feature:11976887-11976961:-1:exon
so has part: feature:11975468-11975575:-1:exon
so has part: feature:11973063-11973131:-1:exon
so has part: feature:11971539-11971613:-1:exon
so has part: feature:11968486-11968675:-1:exon
so has part: feature:11966339-11966544:-1:exon
so has part: feature:11963311-11963430:-1:exon
so has part: feature:11960016-11960231:-1:exon
so has part: feature:11957138-11957228:-1:exon
so has part: feature:11954653-11954747:-1:exon
so has part: feature:11947769-11948949:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12003604-12003747:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11987080-11987175:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11985319-11985477:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11984520-11984690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11982967-11983096:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11982801-11982868:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11981636-11981746:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11979360-11979472:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11976887-11976961:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11975468-11975575:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11973063-11973131:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11971539-11971613:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11968486-11968675:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11966339-11966544:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11963311-11963430:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11960016-11960231:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11957138-11957228:-1:exon

position:11957138:-1
position: 11957138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:11954653-11954747:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:11947769-11948949:-1:exon

ascc2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: ascc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: activating signal cointegrator 1 complex subunit 2 isoform X2
translation: MASTLPLDQMYLSEPDKKTGKAQQLPALHPSRKEDCYFVLYKPPPQDDMPALVEEFLERANFIASDLDWLLSLPHDKFWCQVIFDETLQKSLDSFLRYTPRQYDGLENSNLAIADMQKRLHRSVFMIFLRMSTHKESKEHFITPNVFGEIIYDGFLFDIPKVFDLCIIFGKGNTTLLKKMIGNIFNQQPNYFNDLNETVPTILQVYSSICEKCGLMCENHFNCPQKIDGQTKVSPMDMPLQEFKDILLYLCDTCTTLFAFLDIFPEASRIFQKHDYIQRLASFYEAIIPELENTIKQRRFEEIGLQSDLWRRLSHSRKKIIETFHHIINFKCLQPILENGSEHSLTFIEDFLQIFTALLHQKRFLTDYDEQFPVADDISLLQQAFPALDETRTSYIIKAVDSAWEACSRIKPTFSTGNSQMSNKSAASQVSAINGEMDQDLRQPEYETEDYGAGAAAAKVTGIELESLISQVRDILPHLGEGFILECLEEYNYDTEKVINNILEDKIPPSLQKTDQSLPRKVKQDEESVLSMRRNVFDYDDFDVYNRNAVDLSKIWKGKKKGEDAKTLLDDKTHITQQKERYNAYRIVVENVPVDDAQFYGDDYDDEYDDTYDVNQIGANDVDPDDELISRRPFTIPRVLRQKEEVEDEEEAEEEVSKEEGLKRDLFVQDPALLRERAEARRATFCARKGIKRDNAAVTGMAKGQGQSKETLTERRKKETNKSFRGNHNRRSLADRKRNKGMIPTSF
SIO_010081: ascc2
subclass of: SO_0000673
so part of: ascc2
location: complement(join(11948775..11948949,11954653..11954747,11957150..11957228,11960016..11960231,11963311..11963430,11966339..11966544,11968486..11968675,11971539..11971613,11973063..11973131,11975468..11975575,11976887..11976961,11979360..11979472,11981636..11981746,11982801..11982868,11982967..11983096,11984520..11984690,11985319..11985477,11987080..11987163))
location: region:11948775-11987163:-1
so has part: feature:11987080-11987163:-1:exon
so has part: feature:11985319-11985477:-1:exon
so has part: feature:11984520-11984690:-1:exon
so has part: feature:11982967-11983096:-1:exon
so has part: feature:11982801-11982868:-1:exon
so has part: feature:11981636-11981746:-1:exon
so has part: feature:11979360-11979472:-1:exon
so has part: feature:11976887-11976961:-1:exon
so has part: feature:11975468-11975575:-1:exon
so has part: feature:11973063-11973131:-1:exon
so has part: feature:11971539-11971613:-1:exon
so has part: feature:11968486-11968675:-1:exon
so has part: feature:11966339-11966544:-1:exon
so has part: feature:11963311-11963430:-1:exon
so has part: feature:11960016-11960231:-1:exon
so has part: feature:11957150-11957228:-1:exon
so has part: feature:11954653-11954747:-1:exon
so has part: feature:11948775-11948949:-1:exon

XP_032899053.1
type: Protein
SIO_000068: ncbiprotein

position:11948775:-1
position: 11948775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11987163:-1
position: 11987163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11987080-11987163:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11985319-11985477:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11984520-11984690:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11982967-11983096:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11982801-11982868:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11981636-11981746:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11979360-11979472:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11976887-11976961:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11975468-11975575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11973063-11973131:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11971539-11971613:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11968486-11968675:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11966339-11966544:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11963311-11963430:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11960016-11960231:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11957150-11957228:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11954653-11954747:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:11948775-11948949:-1:exon

ascc2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 386614
gene: ascc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: activating signal cointegrator 1 complex subunit 2 isoform X1
translation: MASTLPLDQMYLSEPDKKTGKAQQLPALHPSRKEDCYFVLYKPPPQDDMPALVEEFLERANFIASDLDWLLSLPHDKFWCQVIFDETLQKSLDSFLRYTPRQYDGLENSNLAIADMQKRLHRSVFMIFLRMSTHKESKEHFITPNVFGEIIYDGFLFDIPKVFDLCIIFGKGNTTLLKKMIGNIFNQQPNYFNDLNETVPTILQVYSSICEKCGLMCENHFNCPQKIDGQTKVSPMDMPLQEFKDILLYLCDTCTTLFAFLDIFPEASRIFQKHDYIQRLASFYEAIIPELENTIKQRRFEEIGLQSDLWRRLSHSRKKIIETFHHIINFKCLQPILENGSEHSLTFIEDFLQIFTALLHQKRFLTDYDEQFPVADDISLLQQAFPALDETRTSYIIKAVDSAWEACSRIKPTFSTGNSQMSNKSAASQVSAINGEMDQDLRQPEYETEDYGAGAAAAKVTGIELESLISQVRDILPHLGEGFILECLEEYNYDTEKVINNILEDKIPPSLQKTDQSLPRKVKQDEESVLSMRRNVFDYDDFDVYNRNAVDLSKIWKGKKKGEDAKTLLDDKTHITQQKERYNAYRIVVENVPVDDAQFYGDDYDDEYDDTYDVNQIGANDVDPDDELISRRPFTIPRVLRQKEEVEDEEEAEEEVSKVTQKEEGLKRDLFVQDPALLRERAEARRATFCARKGIKRDNAAVTGMAKGQGQSKETLTERRKKETNKSFRGNHNRRSLADRKRNKGMIPTSF
SIO_010081: ascc2
subclass of: SO_0000673
so part of: ascc2
location: complement(join(11948775..11948949,11954653..11954747,11957138..11957228,11960016..11960231,11963311..11963430,11966339..11966544,11968486..11968675,11971539..11971613,11973063..11973131,11975468..11975575,11976887..11976961,11979360..11979472,11981636..11981746,11982801..11982868,11982967..11983096,11984520..11984690,11985319..11985477,11987080..11987163))
location: region:11948775-11987163:-1
so has part: feature:11987080-11987163:-1:exon
so has part: feature:11985319-11985477:-1:exon
so has part: feature:11984520-11984690:-1:exon
so has part: feature:11982967-11983096:-1:exon
so has part: feature:11982801-11982868:-1:exon
so has part: feature:11981636-11981746:-1:exon
so has part: feature:11979360-11979472:-1:exon
so has part: feature:11976887-11976961:-1:exon
so has part: feature:11975468-11975575:-1:exon
so has part: feature:11973063-11973131:-1:exon
so has part: feature:11971539-11971613:-1:exon
so has part: feature:11968486-11968675:-1:exon
so has part: feature:11966339-11966544:-1:exon
so has part: feature:11963311-11963430:-1:exon
so has part: feature:11960016-11960231:-1:exon
so has part: feature:11957138-11957228:-1:exon
so has part: feature:11954653-11954747:-1:exon
so has part: feature:11948775-11948949:-1:exon

XP_032899052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11987080-11987163:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11985319-11985477:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11984520-11984690:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11982967-11983096:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11982801-11982868:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11981636-11981746:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11979360-11979472:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11976887-11976961:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11975468-11975575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11973063-11973131:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11971539-11971613:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11968486-11968675:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11966339-11966544:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11963311-11963430:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:11960016-11960231:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:11957138-11957228:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:11954653-11954747:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:11948775-11948949:-1:exon

mtmr3
type: Gene
subclass of: SO_0000704
RO_0002162: 386614
gene: mtmr3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 12003806..12102852
location: region:12003806-12102852:1
so has part: feature:12003806-12102852:1:exon
subclass of: SO_0000010

116987275
type: Gene
SIO_000068: ncbigene

position:12003806:1
position: 12003806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12102852:1
position: 12102852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12003806-12102852:1:exon

mtmr3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 386614
gene: mtmr3
product: myotubularin related protein 3, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_033043169.1
SIO_010081: mtmr3
subclass of: SO_0000673
so part of: mtmr3
location: join(12003806..12004119,12028702..12028777,12037066..12037186,12038850..12038933,12039229..12039300,12044909..12044998,12046080..12046196,12060152..12060234,12062410..12062576,12068964..12069060,12074031..12074144,12075399..12075598,12075745..12075876,12078488..12078599,12078920..12079118,12079349..12079534,12079617..12079787,12080344..12080489,12084966..12086424,12092888..12092998,12095513..12095601,12100748..12102276)
location: region:12003806-12102276:1
so has part: feature:12003806-12004119:1:exon
so has part: feature:12028702-12028777:1:exon
so has part: feature:12037066-12037186:1:exon
so has part: feature:12038850-12038933:1:exon
so has part: feature:12039229-12039300:1:exon
so has part: feature:12044909-12044998:1:exon
so has part: feature:12046080-12046196:1:exon
so has part: feature:12060152-12060234:1:exon
so has part: feature:12062410-12062576:1:exon
so has part: feature:12068964-12069060:1:exon
so has part: feature:12074031-12074144:1:exon
so has part: feature:12075399-12075598:1:exon
so has part: feature:12075745-12075876:1:exon
so has part: feature:12078488-12078599:1:exon
so has part: feature:12078920-12079118:1:exon
so has part: feature:12079349-12079534:1:exon
so has part: feature:12079617-12079787:1:exon
so has part: feature:12080344-12080489:1:exon
so has part: feature:12084966-12086424:1:exon
so has part: feature:12092888-12092998:1:exon
so has part: feature:12095513-12095601:1:exon
so has part: feature:12100748-12102276:1:exon

position:12102276:1
position: 12102276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12003806-12004119:1:exon

position:12004119:1
position: 12004119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12028702-12028777:1:exon

position:12028702:1
position: 12028702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12028777:1
position: 12028777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12037066-12037186:1:exon

position:12037066:1
position: 12037066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12037186:1
position: 12037186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:12038850-12038933:1:exon

position:12038850:1
position: 12038850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12038933:1
position: 12038933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12039229-12039300:1:exon

position:12039229:1
position: 12039229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12039300:1
position: 12039300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:12044909-12044998:1:exon

position:12044909:1
position: 12044909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12044998:1
position: 12044998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:12046080-12046196:1:exon

position:12046080:1
position: 12046080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12046196:1
position: 12046196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:12060152-12060234:1:exon

position:12060152:1
position: 12060152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12060234:1
position: 12060234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:12062410-12062576:1:exon

position:12062410:1
position: 12062410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12062576:1
position: 12062576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:12068964-12069060:1:exon

position:12068964:1
position: 12068964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12069060:1
position: 12069060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:12074031-12074144:1:exon

position:12074031:1
position: 12074031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12074144:1
position: 12074144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:12075399-12075598:1:exon

position:12075399:1
position: 12075399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12075598:1
position: 12075598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:12075745-12075876:1:exon

position:12075745:1
position: 12075745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12075876:1
position: 12075876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:12078488-12078599:1:exon

position:12078488:1
position: 12078488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12078599:1
position: 12078599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:12078920-12079118:1:exon

position:12078920:1
position: 12078920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12079118:1
position: 12079118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:12079349-12079534:1:exon

position:12079349:1
position: 12079349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition