Terribacillus goriensis strain MP602 plasmid pT1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Terribacillus.
Complete genome sequence of a moderately halophilic bacterium Terribacillus aidingensis MP602, isolated from Cryptomeria fortunei in Tianmu mountain in China
Submitted (02-JUL-2014) National Joint Engineering Laboratory of Biopesticide Preparation, Zhejiang Agricultural and Forestry University, Huanchenglu 88, Lin'An, Zhejiang 311300, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP008877.1.\nThe organism was changed from 'Terribacillus aidingensis' to\n'Terribacillus goriensis' in October 2018.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_000725365.1\nCurrent Name :: Terribacillus goriensis\nPrevious Name :: Terribacillus aidingensis\nDate Updated :: 2018-10-26\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_002884435.1\nA1 Name :: Terribacillus goriensis\nA1 ANI :: 98.24367%\nA1 Query Coverage :: 93.15%\nA1 Subject Coverage :: 92.05%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_900215625.1\nA2 Name :: Terribacillus aidingensis\nA2 ANI :: 80.31268%\nA2 Query Coverage :: 49.53%\nA2 Subject Coverage :: 52.28%\n##Taxonomic-Update-Statistics-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: artimist v. 10.1\nGenome Coverage :: 10x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 03:13:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,642\nCDSs (total) :: 3,559\nGenes (coding) :: 3,536\nCDSs (with protein) :: 3,536\nGenes (RNA) :: 83\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 7 of 23\nPseudo Genes (incomplete) :: 15 of 23\nPseudo Genes (internal stop) :: 6 of 23\nPseudo Genes (multiple problems) :: 3 of 23\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024139.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: similar to AA sequence:RefSeq:WP_009792073.1
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: similar to AA sequence:RefSeq:WP_017358895.1
aureocin A53 family class IId bacteriocin
COORDINATES: similar to AA sequence:RefSeq:WP_003474167.1
COORDINATES: similar to AA sequence:RefSeq:WP_003474166.1
COORDINATES: similar to AA sequence:RefSeq:WP_003474165.1
COORDINATES: similar to AA sequence:RefSeq:WP_008591914.1
COORDINATES: similar to AA sequence:RefSeq:WP_014112488.1
COORDINATES: similar to AA sequence:RefSeq:WP_003180859.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025675.2
COORDINATES: protein motif:HMM:NF020498.2
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF028245.2
COORDINATES: similar to AA sequence:RefSeq:WP_002205094.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003308699.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_019380324.1
COORDINATES: similar to AA sequence:RefSeq:WP_016381859.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF023225.2
COORDINATES: protein motif:HMM:NF025108.2
COORDINATES: protein motif:HMM:NF025081.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF028253.2
CagC family type IV secretion system protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_003354148.1
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_000705231.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001005414.1
COORDINATES: similar to AA sequence:RefSeq:WP_017895783.1
COORDINATES: protein motif:HMM:NF041496.1
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF022063.2
COORDINATES: similar to AA sequence:RefSeq:WP_007085128.1
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_018783742.1
COORDINATES: similar to AA sequence:RefSeq:WP_015759710.1
COORDINATES: protein motif:HMM:NF037121.2
COORDINATES: protein motif:HMM:NF024486.2
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017380762.1
toll/interleukin-1 receptor domain-containing protein