Photobacterium damselae strain 2012V-1072 plasmid unnamed1, complete sequence.
type: Entry
definition: Photobacterium damselae strain 2012V-1072 plasmid unnamed1, complete sequence.
sequence version: NZ_CP035781.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP035781.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10702680
keyword: RefSeq
source: Photobacterium damselae
organism: Photobacterium damselae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035781.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 228.64x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:10:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,960\nCDSs (total) :: 3,693\nGenes (coding) :: 3,662\nCDSs (with protein) :: 3,662\nGenes (RNA) :: 267\nrRNAs :: 20, 18, 18 (5S, 16S, 23S)\ncomplete rRNAs :: 20, 18, 18 (5S, 16S, 23S)\ntRNAs :: 207\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 15 of 31\nPseudo Genes (incomplete) :: 15 of 31\nPseudo Genes (internal stop) :: 1 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18342
topology: circular
so has quality: SO_0000988
location: 1..18342
location: region:1-18342:1
RO_0002162: 38293

NZ_CP035781
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10702680
type: BioSample
SIO_000068: biosample

1
title: Average Nucleotide Identity (ANI) for Identification of Enteric Bacteria using Whole Genome Sequence (WGS)
author: Lindsey, R.L.
author: Huang, A.
author: Katz, L.S.
author: Williams, G.
author: Lauer, A.
author: Pruckler, J.
author: Kucerova, Z.
author: Griswold, T.
author: Gladney, L.
author: Im, S.
author: Roache, K.
author: Garcia-Toledo, L.
author: Sabol, A.
author: Smith, P.
author: Dinsmore, B.
author: Turnsek, M.
author: Santovenia, M.
author: Lane, C.
author: Busby, S.
author: Winkjer, J.
author: Kim, J.
author: Patel, P.
author: Fields, P.
author: Strockbine, N.
author: Fitzgerald, C.
author: Pouseele, H.
author: Gerner-Smidt, P.
author: Carleton, H.
author: Tarr, C.
author: Rigney, Z.
journal: Unpublished

2
title: Direct Submission
author: Griswold, T.
author: Batra, D.
author: Busby, S.
author: Tarr, C.
author: Rowe, L.
author: Santovenia, M.
journal: Submitted (04-FEB-2019) EDLB, CDC, 1600 Clifton Road, Atlanta, GA 30329, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18342:1
position: 18342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18342:1:source
so part of: sequence
organism: Photobacterium damselae
mol type: genomic DNA
strain: 2012V-1072
plasmid: unnamed1

38293
type: Taxonomy
SIO_000068: taxonomy

EPB60_RS19910
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS19910
so part of: sequence
location: 73..207
location: region:73-207:1
so has part: feature:73-207:1:exon
subclass of: SO_0000010

76787544
type: Gene
SIO_000068: ncbigene

position:73:1
position: 73
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207:1
position: 207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73-207:1:exon

EPB60_RS19910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS19910
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLLNKCQTKSVAERKTESLRDFAKAYSKALKSGTVKRVVSVAE
SIO_010081: EPB60_RS19910
subclass of: SO_0000673
so part of: EPB60_RS19910
location: 73..207
location: region:73-207:1
so has part: feature:73-207:1:exon

WP_267490399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73-207:1:exon

EPB60_RS14600
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14600
so part of: sequence
location: complement(263..796)
location: region:263-796:-1
so has part: feature:263-796:-1:exon
subclass of: SO_0000010

57342461
type: Gene
SIO_000068: ncbigene

position:263:-1
position: 263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:796:-1
position: 796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263-796:-1:exon

EPB60_RS14600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14600
inference: COORDINATES: protein motif:HMM:NF023444.2
GO component: GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO process: GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GspH/FimT family pseudopilin
translation: MKLKGFTLLELIITISVLGIILVMAAPSFNHLLASNIIQRTSTELRSLIVAAKSEAVMRNTDVYLHTVGLTSTKTLTDNWCLIATTDATIADCDHNNILYKVDGRQLTGLNIKRHESYAKIRIDKMNGHPDFGGSAAPIDWITFEKEGGKALTMQMSWTSRLYECGEGGEWYRAEEC
SIO_010081: EPB60_RS14600
subclass of: SO_0000673
so part of: EPB60_RS14600
location: complement(263..796)
location: region:263-796:-1
so has part: feature:263-796:-1:exon

WP_154140409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:263-796:-1:exon

EPB60_RS14605
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14605
pseudo: true
so part of: sequence
location: complement(834..1351)
location: region:834-1351:-1
so has part: feature:834-1351:-1:exon
subclass of: SO_0000010

57342462
type: Gene
SIO_000068: ncbigene

position:834:-1
position: 834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1351:-1
position: 1351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:834-1351:-1:exon

EPB60_RS14605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: metal-dependent hydrolase
SIO_010081: EPB60_RS14605
subclass of: SO_0000673
so part of: EPB60_RS14605
location: complement(834..1351)
location: region:834-1351:-1
so has part: feature:834-1351:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:834-1351:-1:exon

EPB60_RS14610
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14610
so part of: sequence
location: complement(1348..2097)
location: region:1348-2097:-1
so has part: feature:1348-2097:-1:exon
subclass of: SO_0000010

57342463
type: Gene
SIO_000068: ncbigene

position:1348:-1
position: 1348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2097:-1
position: 2097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1348-2097:-1:exon

EPB60_RS14610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010448492.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLLIVIFYVLCALLSTKAAAEDTWPIDLPWQQPQEPSPEVKPFELPTLKGDGPHYNTVLPALKAAPKVSPDEIYQLITRCYPEKSKFKIDIDLVAGVKASFDQYDTSDFPDITEHYVGVVGKMPIYSTTEQSREREWEHKRRVKTASDVASFSEALANRNHAYREMGIYLAMEARSQARVKQGIANVSEQIGYLEKVAAAQRDILKYEAQVVENRLALISMCDDNTSERMNNYLKRIAYLPPPKGKEPQ
SIO_010081: EPB60_RS14610
subclass of: SO_0000673
so part of: EPB60_RS14610
location: complement(1348..2097)
location: region:1348-2097:-1
so has part: feature:1348-2097:-1:exon

WP_154140426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1348-2097:-1:exon

EPB60_RS14615
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14615
so part of: sequence
location: complement(2150..2872)
location: region:2150-2872:-1
so has part: feature:2150-2872:-1:exon
subclass of: SO_0000010

57342464
type: Gene
SIO_000068: ncbigene

position:2150:-1
position: 2150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2872:-1
position: 2872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2150-2872:-1:exon

EPB60_RS14615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFLKLRTDSKRQRKDGSKYITPLIVDAPRRFAPSDTRKETSLRRKECQLITGAHDSGKSRWLIRLKDNRNEIWGKKPQPIVLEGLMPLSSWVEVKGIDKWYTDFTKDQDNRTPWHKLNLQLKADLLSEYLLDTQTLLFIDDAHKLTGRKAQIARKCMLSAKLWLVAVSEEGRLPPSIRPIIERRNPQRTNLESDVSYDTTKALIWFLVAMCVVAGAWEAGAVIGGLQMLGSGRRSSRAD
SIO_010081: EPB60_RS14615
subclass of: SO_0000673
so part of: EPB60_RS14615
location: complement(2150..2872)
location: region:2150-2872:-1
so has part: feature:2150-2872:-1:exon

WP_154140410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2150-2872:-1:exon

EPB60_RS14620
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14620
so part of: sequence
location: 4025..4627
location: region:4025-4627:1
so has part: feature:4025-4627:1:exon
subclass of: SO_0000010

57342465
type: Gene
SIO_000068: ncbigene

position:4025:1
position: 4025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4627:1
position: 4627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4025-4627:1:exon

EPB60_RS14620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005534941.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MPSYAYLRVSTDAQDVNNQKHGILEYANRLAIVNLAFVEDAVSGAKKWQDRRLGLLLNDLGDGDTLIFSEVTRMARSTIQVLEILELCMDKGITVHIAKQNMVLDGSMQSKIIATILGLAGEIDREFIRMRTKEALAARKAKGQILGRPPGPAKKLKLDDKREQIEKYLKMGLGIRATAKLLDVAPSTLCDYIRIREITR
SIO_010081: EPB60_RS14620
subclass of: SO_0000673
so part of: EPB60_RS14620
location: 4025..4627
location: region:4025-4627:1
so has part: feature:4025-4627:1:exon

WP_154140411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4025-4627:1:exon

EPB60_RS14625
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14625
so part of: sequence
location: complement(4761..5360)
location: region:4761-5360:-1
so has part: feature:4761-5360:-1:exon
subclass of: SO_0000010

57342466
type: Gene
SIO_000068: ncbigene

position:4761:-1
position: 4761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5360:-1
position: 5360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4761-5360:-1:exon

EPB60_RS14625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14625
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSYDKIFDAINVVNIVSVVSVFVATISAYHAKKTYELAKNLAKRCNLFFSVHPNSLIITATSTTERLIAHEILITVRKNFFQRKTYSLTKLYNLNSQLYKGDSYNDIFSTLFERGLIAGESYEFPITELFKLATNKIILQKNFIGLDINSLRIGKNVKITFMLNGNSYPVNLKMTKKLLDEILNEETTFSKFRLRTCIS
SIO_010081: EPB60_RS14625
subclass of: SO_0000673
so part of: EPB60_RS14625
location: complement(4761..5360)
location: region:4761-5360:-1
so has part: feature:4761-5360:-1:exon

WP_154140412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4761-5360:-1:exon

EPB60_RS14630
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14630
so part of: sequence
location: complement(5389..5586)
location: region:5389-5586:-1
so has part: feature:5389-5586:-1:exon
subclass of: SO_0000010

57342467
type: Gene
SIO_000068: ncbigene

position:5389:-1
position: 5389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5586:-1
position: 5586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5389-5586:-1:exon

EPB60_RS14630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14630
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERSVLEFYCESCEEKYTGMINEICQVGVRYRASCPYCNNSNNYNLMGAAINMSNCINAVDVYKD
SIO_010081: EPB60_RS14630
subclass of: SO_0000673
so part of: EPB60_RS14630
location: complement(5389..5586)
location: region:5389-5586:-1
so has part: feature:5389-5586:-1:exon

WP_154140413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5389-5586:-1:exon

EPB60_RS14635
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14635
so part of: sequence
location: 5958..6242
location: region:5958-6242:1
so has part: feature:5958-6242:1:exon
subclass of: SO_0000010

57342468
type: Gene
SIO_000068: ncbigene

position:5958:1
position: 5958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6242:1
position: 6242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5958-6242:1:exon

EPB60_RS14635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001547725.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIIIASVIAISFSTNSQAGYLDYGYVSESEMSEDVSLLAQASLLYKTGGERKALESTQRICKGIEIKYDKTSSPTPNMKRWKRKVDGICSGY
SIO_010081: EPB60_RS14635
subclass of: SO_0000673
so part of: EPB60_RS14635
location: 5958..6242
location: region:5958-6242:1
so has part: feature:5958-6242:1:exon

WP_154140414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5958-6242:1:exon

EPB60_RS14640
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14640
so part of: sequence
location: complement(6551..7462)
location: region:6551-7462:-1
so has part: feature:6551-7462:-1:exon
subclass of: SO_0000010

57342469
type: Gene
SIO_000068: ncbigene

position:6551:-1
position: 6551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7462:-1
position: 7462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6551-7462:-1:exon

EPB60_RS14640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYHFDSKVKLSEESEYKSLYKWFIQEVNNQGEAQGEKLIPYNGDMNFSASELRITRKIESHIMAFFDGDQPQKKEIKSTEIISGVLHNGFCRDGKELDGYTRFEMIGTDREIERISLIIVPIDDGGKEVCKLDGIISYSSYGFTQDDYLSISFYVKRERFDMLAKAIDNNSVSLVNISIDHVNGFYASWSPDYDASLVKVLTHEHDEILTYDNCDIDLPKLGVVDSFDISFVTRCPLNFKQDYTPTNMHELFKDEEKEIESKEDKTEKLLSQIMASQASLISLKKPLWFIVIILSLLVVKAL
SIO_010081: EPB60_RS14640
subclass of: SO_0000673
so part of: EPB60_RS14640
location: complement(6551..7462)
location: region:6551-7462:-1
so has part: feature:6551-7462:-1:exon

WP_154140415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6551-7462:-1:exon

EPB60_RS19915
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS19915
so part of: sequence
location: complement(7589..7714)
location: region:7589-7714:-1
so has part: feature:7589-7714:-1:exon
subclass of: SO_0000010

76787545
type: Gene
SIO_000068: ncbigene

position:7589:-1
position: 7589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7714:-1
position: 7714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7589-7714:-1:exon

EPB60_RS19915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS19915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012219364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLLIVLLVGLFTVGVANACPKGQHPYGGTGPHHKGGYCA
SIO_010081: EPB60_RS19915
subclass of: SO_0000673
so part of: EPB60_RS19915
location: complement(7589..7714)
location: region:7589-7714:-1
so has part: feature:7589-7714:-1:exon

WP_267490400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7589-7714:-1:exon

EPB60_RS14645
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14645
so part of: sequence
location: complement(8058..8420)
location: region:8058-8420:-1
so has part: feature:8058-8420:-1:exon
subclass of: SO_0000010

57342470
type: Gene
SIO_000068: ncbigene

position:8058:-1
position: 8058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8420:-1
position: 8420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8058-8420:-1:exon

EPB60_RS14645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFVVNMAAVVQMSLKYHYADYIYNMKFVLYFGDNMSNEIISFKEMLMVRPVADGKTAFSSASETLKRQRAVVVALELIKADIGSAYSHAGSGDERTITLETHMKNLSEYADCILNAMES
SIO_010081: EPB60_RS14645
subclass of: SO_0000673
so part of: EPB60_RS14645
location: complement(8058..8420)
location: region:8058-8420:-1
so has part: feature:8058-8420:-1:exon

WP_154140416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8058-8420:-1:exon

EPB60_RS14650
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14650
so part of: sequence
location: complement(8464..8637)
location: region:8464-8637:-1
so has part: feature:8464-8637:-1:exon
subclass of: SO_0000010

57342471
type: Gene
SIO_000068: ncbigene

position:8464:-1
position: 8464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8637:-1
position: 8637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8464-8637:-1:exon

EPB60_RS14650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGQEKKEQMKKEDNGLSYKVCKNLGCRVPYDEIDIFNKTGYCGDCAAKLDQYWKEDD
SIO_010081: EPB60_RS14650
subclass of: SO_0000673
so part of: EPB60_RS14650
location: complement(8464..8637)
location: region:8464-8637:-1
so has part: feature:8464-8637:-1:exon

WP_154140417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8464-8637:-1:exon

EPB60_RS14655
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14655
so part of: sequence
location: complement(10033..11109)
location: region:10033-11109:-1
so has part: feature:10033-11109:-1:exon
subclass of: SO_0000010

57342472
type: Gene
SIO_000068: ncbigene

position:10033:-1
position: 10033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11109:-1
position: 11109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10033-11109:-1:exon

EPB60_RS14655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005536335.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNSEEQFYPIVSDTLPKHIKKGHQLVFSRQDLSAREADMFALMIAHMKGSDWEHCTPHYSFTSQQLSEWLGVDAKHIGSNLSPVAQRLSSRKIGIKQETAKGDVEFDYRPLFKHIAYKNGTLTMVPNDMLKSEYIEYNQGFALINTRNFFDVKKEYSKRLYELLSRFKSKGYEMHVQSLQELKGVFGLLDEVGKIRKDKSSFKNNSVFMKRCIRESIKDLSEHPQISKELLFIESEQGDKGFELVRKGRTITGIKFLFRWLKLGTVDELNQHDAMKAIKELELKRLQANIKLSNAELETLAIAYRYLGRDDKATLIEETLAKRHFNQDQESEPKTQSELDELLSKIDSFAETSGNPDY
SIO_010081: EPB60_RS14655
subclass of: SO_0000673
so part of: EPB60_RS14655
location: complement(10033..11109)
location: region:10033-11109:-1
so has part: feature:10033-11109:-1:exon

WP_154140418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10033-11109:-1:exon

EPB60_RS14660
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14660
so part of: sequence
location: complement(11219..11539)
location: region:11219-11539:-1
so has part: feature:11219-11539:-1:exon
subclass of: SO_0000010

57342473
type: Gene
SIO_000068: ncbigene

position:11219:-1
position: 11219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11539:-1
position: 11539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11219-11539:-1:exon

EPB60_RS14660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019442218.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKITGKTALQRRQERKQIQAQAVEQTPIVKEKITTVGTKKNVTTGTSPVPMRLSENDKADLNLWLTELSEQTGKKITGAKLLRGLIKMRGQINNKKLIQAIYEAN
SIO_010081: EPB60_RS14660
subclass of: SO_0000673
so part of: EPB60_RS14660
location: complement(11219..11539)
location: region:11219-11539:-1
so has part: feature:11219-11539:-1:exon

WP_154140419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11219-11539:-1:exon

EPB60_RS14665
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14665
so part of: sequence
location: complement(11558..12334)
location: region:11558-12334:-1
so has part: feature:11558-12334:-1:exon
subclass of: SO_0000010

57342474
type: Gene
SIO_000068: ncbigene

position:11558:-1
position: 11558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12334:-1
position: 12334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11558-12334:-1:exon

EPB60_RS14665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005502877.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKVIAIINQKGGVGKTTTAINLSAQYAKEGKRTLVIDLDPQGNLSTVLSGGEFEFATTVADVFESAKKHPIISAIIPTVAAGNPVTNLSLCPADIRLSRVIEQSLTKIHRERILLKQLETIKDDYDLVILDCPPNLSLTSVNAMMAADLFLIPVDGGSFSLNGLADLLDALEEVKETDNVNFAVFRNEYAKANKVINNFLDEQLDSLEGKVLKSVIRRTEAIGQASVCGEPLLTYKSGSTAVNDYKALAKEVLARINV
SIO_010081: EPB60_RS14665
subclass of: SO_0000673
so part of: EPB60_RS14665
location: complement(11558..12334)
location: region:11558-12334:-1
so has part: feature:11558-12334:-1:exon

WP_154140420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11558-12334:-1:exon

EPB60_RS14670
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14670
so part of: sequence
location: 12556..13512
location: region:12556-13512:1
so has part: feature:12556-13512:1:exon
subclass of: SO_0000010

57342475
type: Gene
SIO_000068: ncbigene

position:12556:1
position: 12556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13512:1
position: 13512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12556-13512:1:exon

EPB60_RS14670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008989874.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MDVSLSGNQLQDKVTAICNDLYSKGQKVSVRIVLSLLPEISSTSTIHKYYKNWKDELEANQKSLLEKMGFSEEFTRVFMAEITRHATEAERRYREIAEDAKEQSLLAIEDLERAEDRLYKQTALLEQREKRIKEMDAELSQAEKAQNAITQELRQQIESLTEQLNESMTSNERLRTELAKNELKLESNVALVDETKQQNMTLNEQVKSLSDKAISQAQELTRVESKLESQELLLTELRETKVTLQATNQSLDNDLRQIQQERHTLAASLEEAKSNVATVTNRFEQTSAQVAELKVQLHQNDEMIKRYEDLLRKQENKK
SIO_010081: EPB60_RS14670
subclass of: SO_0000673
so part of: EPB60_RS14670
location: 12556..13512
location: region:12556-13512:1
so has part: feature:12556-13512:1:exon

WP_154140421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12556-13512:1:exon

EPB60_RS14675
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14675
so part of: sequence
location: complement(14587..16080)
location: region:14587-16080:-1
so has part: feature:14587-16080:-1:exon
subclass of: SO_0000010

57342476
type: Gene
SIO_000068: ncbigene

position:14587:-1
position: 14587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16080:-1
position: 16080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14587-16080:-1:exon

EPB60_RS14675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14675
inference: COORDINATES: protein motif:HMM:NF012234.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKINTDFLCVATQNVTDDFDRPLLSSLTSMQYDFLPRFLPEDMASLDECLLVAFEKAKLEANRVIEDYEGFDWLSLLKEDKDGYEENRVFLEKYKKRLVYVNEAELLKDDLDVFGKMKLINYLSSMCERIIFDYRSFSWSKYHKEEPDYFSESKAFYIRYLYRNREISQSMRTQKYNEQLSTHLKNTRAYMDEKLIISPFIAPEYRDDYGVSSNTNQTSKKVSRKDLYTLQSELDSMIGLEVVKKRISSLVSEIAIRKERKNHGLPTNERSYHMVFTGNSGTGKTVVARIVAQMLYALGVTKKNTFIEATRADLVAGYVGHTAIKTNEVIDSALGGVLFIDEAYALNGSGNDFGSEAITTLLKRMEDERSNLIVIIAGYEQEMDELLESNQGLESRFNRRIHFDDYDNNELGLILKRNIKKNGYTLNSQVSDHIVDIVLSDTASNKSKFSNGRGVRNLFEKIIENQEHRIYKNGRLDQLSKEQLQEILLEDMLSVVK
SIO_010081: EPB60_RS14675
subclass of: SO_0000673
so part of: EPB60_RS14675
location: complement(14587..16080)
location: region:14587-16080:-1
so has part: feature:14587-16080:-1:exon

WP_154140422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14587-16080:-1:exon

EPB60_RS14680
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14680
so part of: sequence
location: 17106..17411
location: region:17106-17411:1
so has part: feature:17106-17411:1:exon
subclass of: SO_0000010

57342477
type: Gene
SIO_000068: ncbigene

position:17106:1
position: 17106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17411:1
position: 17411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17106-17411:1:exon

EPB60_RS14680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAHSNLPQPSITKSQQASSVSPLHQSGSTAMSVQDPVFPIDKALYKLYQNLRNCNLRVIEMVSALNFVLRQYEGASIICTCDDLECFITEIEMYETEENLK
SIO_010081: EPB60_RS14680
subclass of: SO_0000673
so part of: EPB60_RS14680
location: 17106..17411
location: region:17106-17411:1
so has part: feature:17106-17411:1:exon

WP_154140423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17106-17411:1:exon

EPB60_RS14685
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14685
so part of: sequence
location: 17408..17737
location: region:17408-17737:1
so has part: feature:17408-17737:1:exon
subclass of: SO_0000010

57342478
type: Gene
SIO_000068: ncbigene

position:17408:1
position: 17408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17737:1
position: 17737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17408-17737:1:exon

EPB60_RS14685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005650230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSPSYHMNIAKTILQQLGGQRFITMTGARNFVAFPAPGLQFDLPRNSMVKNHIKRVHVILDPSDTYTVLTMTKKRGQLDYVEVERVSGVYCDMLEGIFTDMTGLYTSL
SIO_010081: EPB60_RS14685
subclass of: SO_0000673
so part of: EPB60_RS14685
location: 17408..17737
location: region:17408-17737:1
so has part: feature:17408-17737:1:exon

WP_229519520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17408-17737:1:exon

EPB60_RS14690
type: Gene
subclass of: SO_0000704
RO_0002162: 38293
locus tag: EPB60_RS14690
so part of: sequence
location: complement(17780..18058)
location: region:17780-18058:-1
so has part: feature:17780-18058:-1:exon
subclass of: SO_0000010

57342479
type: Gene
SIO_000068: ncbigene

position:17780:-1
position: 17780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18058:-1
position: 18058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17780-18058:-1:exon

EPB60_RS14690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38293
locus tag: EPB60_RS14690
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MACNTDNYEFFFTLYDSKQTRAFLDGKKRSIHIDNSQPHLFFNSISLRQNITGMFIDLFDDKNELIDIYGIDSIEHFESLKAYAKKYNFLQE
SIO_010081: EPB60_RS14690
subclass of: SO_0000673
so part of: EPB60_RS14690
location: complement(17780..18058)
location: region:17780-18058:-1
so has part: feature:17780-18058:-1:exon

WP_154140425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17780-18058:-1:exon