Photobacterium damselae strain 2012V-1072 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.
Average Nucleotide Identity (ANI) for Identification of Enteric Bacteria using Whole Genome Sequence (WGS)
Submitted (04-FEB-2019) EDLB, CDC, 1600 Clifton Road, Atlanta, GA 30329, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP035781.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 228.64x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:10:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,960\nCDSs (total) :: 3,693\nGenes (coding) :: 3,662\nCDSs (with protein) :: 3,662\nGenes (RNA) :: 267\nrRNAs :: 20, 18, 18 (5S, 16S, 23S)\ncomplete rRNAs :: 20, 18, 18 (5S, 16S, 23S)\ntRNAs :: 207\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 15 of 31\nPseudo Genes (incomplete) :: 15 of 31\nPseudo Genes (internal stop) :: 1 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023444.2
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010448492.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1
COORDINATES: similar to AA sequence:RefSeq:WP_005534941.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001547725.1
COORDINATES: similar to AA sequence:RefSeq:WP_012219364.1
COORDINATES: similar to AA sequence:RefSeq:WP_005536335.1
COORDINATES: similar to AA sequence:RefSeq:WP_019442218.1
COORDINATES: similar to AA sequence:RefSeq:WP_005502877.1
COORDINATES: similar to AA sequence:RefSeq:WP_008989874.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005650230.1