Bartonella tribocorum CIP 105476 plasmid pBT01, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella.
Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors
Submitted (30-MAR-2006) Schuster S.C., Department of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics Center for Infectious Disease Dynamics, 310 Wartik Building, Penn State University, University Park, PA 16802, USA Phone +1 814 863-9278, FAX +1 814 863-6699
REFSEQ INFORMATION: The reference sequence is identical to\nAM260524.1.\nClone requests: scs@bx.psu.edu.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 00:58:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,332\nCDSs (total) :: 2,280\nGenes (coding) :: 2,167\nCDSs (with protein) :: 2,167\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 70 of 113\nPseudo Genes (incomplete) :: 71 of 113\nPseudo Genes (internal stop) :: 43 of 113\nPseudo Genes (multiple problems) :: 53 of 113\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Site-specific recombinases, DNA invertase Pin homologs
COORDINATES: similar to AA sequence:RefSeq:WP_012230203.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ATPases involved in chromosome partitioning
COORDINATES: similar to AA sequence:RefSeq:WP_007348022.1
COORDINATES: similar to AA sequence:RefSeq:WP_007348023.1
COORDINATES: similar to AA sequence:RefSeq:WP_007348024.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007348018.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007348019.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007348001.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007346889.1
COORDINATES: similar to AA sequence:RefSeq:WP_012231657.1
COORDINATES: similar to AA sequence:RefSeq:WP_012231685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012231632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012231642.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005773380.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
type ISP restriction/modification enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007347739.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347738.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398784.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347971.1