Cupriavidus necator H16 plasmid pHG1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Long-read de novo sequencing of Cupriavidus necator H16
Submitted (09-APR-2019) SBRC, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nCP039289.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2019\nAssembly Method :: HGAP v. 2015; CLC Genomics Workbench 12.0\n v. MARCH-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 84.0x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:59:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,892\nCDSs (total) :: 6,810\nGenes (coding) :: 6,634\nCDSs (with protein) :: 6,634\nGenes (RNA) :: 82\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 176\nCDSs (without protein) :: 176\nPseudo Genes (ambiguous residues) :: 0 of 176\nPseudo Genes (frameshifted) :: 83 of 176\nPseudo Genes (incomplete) :: 134 of 176\nPseudo Genes (internal stop) :: 16 of 176\nPseudo Genes (multiple problems) :: 54 of 176\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008063481.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019574237.1
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008063475.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011516060.1
HyaD/HybD family hydrogenase maturation endopeptidase
membrane-bound hydrogenase accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_011516059.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_011830403.1
hydrogenase expression/formation protein HoxO
COORDINATES: similar to AA sequence:RefSeq:WP_018904270.1
hydrogenase expression/formation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008063453.1
COORDINATES: protein motif:HMM:NF023365.2
[NiFe]-hydrogenase assembly chaperone HybE
COORDINATES: similar to AA sequence:RefSeq:WP_020483416.1
hydrogenase expression/formation protein HoxV
COORDINATES: similar to AA sequence:RefSeq:WP_017845600.1
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_017845601.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_011153939.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314849.1
COORDINATES: similar to AA sequence:RefSeq:WP_008063442.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011153942.1
hydrogenase maturation carbamoyl dehydratase HypE
COORDINATES: similar to AA sequence:RefSeq:WP_018992877.1
COORDINATES: similar to AA sequence:RefSeq:WP_008063435.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020162847.1
regulatory [NiFe] hydrogenase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019915998.1
GO:0016151 - nickel cation binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019574256.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010171840.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0046915 - transition metal ion transmembrane transporter activity [Evidence IEA]
GO:0000041 - transition metal ion transport [Evidence IEA]
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: similar to AA sequence:RefSeq:WP_076611536.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element IS881 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017940309.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_011463261.1
COORDINATES: protein motif:HMM:NF012536.2
COORDINATES: similar to AA sequence:RefSeq:WP_013205013.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579901.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235908.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008495646.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_011236107.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875218.1
COORDINATES: similar to AA sequence:RefSeq:WP_011682412.1
COORDINATES: similar to AA sequence:RefSeq:WP_011236108.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153965.1
ISL3-like element ISAe1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012584413.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875219.1
transposase DNA-binding-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009894663.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406686.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428289.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310730.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871350.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004544955.1
COORDINATES: similar to AA sequence:RefSeq:WP_014001292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006412423.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020202954.1
COORDINATES: similar to AA sequence:RefSeq:WP_020709995.1
COORDINATES: similar to AA sequence:RefSeq:WP_011688202.1
COORDINATES: protein motif:HMM:NF013286.2
COORDINATES: similar to AA sequence:RefSeq:WP_016920678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018409046.1
COORDINATES: similar to AA sequence:RefSeq:WP_012872949.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015597393.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013946086.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896568.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592701.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124508.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_011321273.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013321758.1
COORDINATES: similar to AA sequence:RefSeq:WP_011515655.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611664.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612306.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612315.1
transposase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011154010.1
bidirectional NAD-reducing hydrogenase diaphorase subunit HoxF
COORDINATES: similar to AA sequence:RefSeq:WP_011154011.1
bidirectional NAD-reducing hydrogenase diaphorase subunit HoxU
subunit of NAD-reducing [NiFe] hydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011516267.1
COORDINATES: similar to AA sequence:RefSeq:WP_011154013.1
bidirectional NAD-reducing hydrogenase subunit HoxH
COORDINATES: similar to AA sequence:RefSeq:WP_011516269.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516270.1
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011516275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516276.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0051604 - protein maturation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011516277.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006164514.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954256.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954257.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954258.1
COORDINATES: similar to AA sequence:RefSeq:WP_018313455.1
COORDINATES: similar to AA sequence:RefSeq:WP_013956787.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF022661.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_013959222.1
COORDINATES: similar to AA sequence:RefSeq:WP_003158906.1
COORDINATES: similar to AA sequence:RefSeq:WP_003160813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012990560.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612082.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018008326.1
COORDINATES: similar to AA sequence:RefSeq:WP_006483061.1
COORDINATES: similar to AA sequence:RefSeq:WP_008017239.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_011615071.1
COORDINATES: similar to AA sequence:RefSeq:WP_013953630.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314294.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018007357.1
COORDINATES: similar to AA sequence:RefSeq:WP_018007358.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018314297.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018007360.1
COORDINATES: similar to AA sequence:RefSeq:WP_018993023.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012353884.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008651852.1
COORDINATES: similar to AA sequence:RefSeq:WP_020228946.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516041.1
COORDINATES: similar to AA sequence:RefSeq:WP_013088974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182523.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011154060.1
Tn3-like element IS882 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010813735.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037127.2
COORDINATES: similar to AA sequence:RefSeq:WP_001543766.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019718202.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354860.1
COORDINATES: similar to AA sequence:RefSeq:WP_014619682.1
COORDINATES: similar to AA sequence:RefSeq:WP_011296125.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182320.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011154075.1
IS66-like element IS883 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012354827.1
COORDINATES: protein motif:HMM:NF037530.2
COORDINATES: similar to AA sequence:RefSeq:WP_016247043.1
AVAST type 1 anti-phage system protein Avs1c
COORDINATES: protein motif:HMM:NF012318.2
AVAST type 1 anti-phage system protease Avs1b
COORDINATES: protein motif:HMM:NF012955.2
AVAST type 1 anti-phage system MBL fold metallo-hydrolase Avs1a
COORDINATES: similar to AA sequence:RefSeq:WP_001514720.1
COORDINATES: similar to AA sequence:RefSeq:WP_006952075.1
COORDINATES: similar to AA sequence:RefSeq:WP_013801395.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354459.1
cold shock and DUF1294 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354460.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF037411.2
COORDINATES: similar to AA sequence:RefSeq:WP_013959227.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006952558.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011296162.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959180.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420586.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959270.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959257.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF018549.2
COORDINATES: similar to AA sequence:RefSeq:WP_018314114.1
COORDINATES: similar to AA sequence:RefSeq:WP_008651043.1
COORDINATES: similar to AA sequence:RefSeq:WP_010811174.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295911.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018315126.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018315127.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018312755.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006760907.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008646539.1
COORDINATES: similar to AA sequence:RefSeq:WP_004755961.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008648470.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648467.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648464.1
COORDINATES: similar to AA sequence:RefSeq:WP_004299248.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295775.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954372.1
COORDINATES: similar to AA sequence:RefSeq:WP_010812735.1
COORDINATES: similar to AA sequence:RefSeq:WP_005795700.1
involved in the transport of nitrate and nitrite; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011297937.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487796.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970132.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018312096.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011299046.1
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011301247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011154117.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295791.1
COORDINATES: protein motif:HMM:NF013086.2
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: similar to AA sequence:RefSeq:WP_018312151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406551.1
COORDINATES: similar to AA sequence:RefSeq:WP_019446959.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0042126 - nitrate metabolic process [Evidence IEA]
periplasmic nitrate reductase, NapE protein
COORDINATES: similar to AA sequence:RefSeq:WP_011300876.1
COORDINATES: similar to AA sequence:RefSeq:WP_004631733.1
periplasmic nitrate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011300878.1
nitrate reductase cytochrome c-type subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009241406.1
COORDINATES: similar to AA sequence:RefSeq:WP_012762779.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
cytochrome c biogenesis heme-transporting ATPase CcmA
COORDINATES: similar to AA sequence:RefSeq:WP_013952459.1
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008644367.1
COORDINATES: similar to AA sequence:RefSeq:WP_006224205.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012436333.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0017003 - protein-heme linkage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012355485.1
COORDINATES: similar to AA sequence:RefSeq:WP_013952454.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_009241414.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_011300887.1
GO:0051082 - unfolded protein binding [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_003272894.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006762777.1
COORDINATES: similar to AA sequence:RefSeq:WP_010809938.1
COORDINATES: protein motif:HMM:NF024592.2
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: similar to AA sequence:RefSeq:WP_013953019.1
COORDINATES: similar to AA sequence:RefSeq:WP_003275987.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013953021.1
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019704029.1
Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020203224.1
COORDINATES: similar to AA sequence:RefSeq:WP_014087680.1
COORDINATES: similar to AA sequence:RefSeq:WP_020163478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011485590.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203221.1
COORDINATES: similar to AA sequence:RefSeq:WP_003261143.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_009458520.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_020203218.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011381313.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007862511.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315427.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
nitric oxide reductase transcriptional regulator NorR
nitrous-oxide reductase accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_004627739.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_012430157.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804569.1
COORDINATES: similar to AA sequence:RefSeq:WP_015436023.1
nitrous oxide reductase family maturation protein NosD
probably involved in transcriptional regulation of nitrous oxide reductase; transmembrane
COORDINATES: similar to AA sequence:RefSeq:WP_014631913.1
denitrification, reduction of nitrous oxide
COORDINATES: similar to AA sequence:RefSeq:WP_011519338.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008651078.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011004616.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011519360.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011519361.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010464843.1
COORDINATES: similar to AA sequence:RefSeq:WP_020206263.1
COORDINATES: similar to AA sequence:RefSeq:WP_020206259.1
COORDINATES: similar to AA sequence:RefSeq:WP_020206264.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301176.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011301177.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301178.1
COORDINATES: similar to AA sequence:RefSeq:WP_019448289.1
type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011301180.1
COORDINATES: similar to AA sequence:RefSeq:WP_013953853.1
COORDINATES: similar to AA sequence:RefSeq:WP_018308653.1
COORDINATES: similar to AA sequence:RefSeq:WP_004524712.1
GO:0015514 - nitrite efflux transmembrane transporter activity [Evidence IEA]
GO:0015707 - nitrite transport [Evidence IEA]
NarK family nitrate/nitrite MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019448302.1
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006025933.1
COORDINATES: similar to AA sequence:RefSeq:WP_013953858.1
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_013953859.1
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_018308647.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006453.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdopterin-guanine dinucleotide biosynthesis protein B
COORDINATES: similar to AA sequence:RefSeq:WP_018007730.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
fumarate/nitrate reduction transcriptional regulator Fnr
COORDINATES: protein motif:HMM:NF024886.2
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF014763.2
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1
COORDINATES: similar to AA sequence:RefSeq:WP_009906855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337509.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156692.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519964.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514882.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003801.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004032.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239955.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004035.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239952.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954391.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004040.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645386.1
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018004042.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004043.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004044.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239944.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514885.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645397.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645398.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004053.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645404.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008645405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354522.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354524.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354526.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201349.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239937.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008645414.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645415.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354532.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004058.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315513.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648655.1
Lar family restriction alleviation protein
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: similar to AA sequence:RefSeq:WP_020202816.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645425.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343135.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354543.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201373.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008649404.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354550.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020384423.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514909.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354552.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354553.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242043.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_018314034.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636268.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354560.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354561.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354563.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354564.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354565.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008649449.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354569.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354570.1
conjugative mating pair formation and DNA transfer
COORDINATES: similar to AA sequence:RefSeq:WP_012354571.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645668.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354573.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354574.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649463.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354577.1
GO:0003674 - molecular_function [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_012354578.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354580.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354581.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649473.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954484.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310446.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310445.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954104.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013954106.1
COORDINATES: similar to AA sequence:RefSeq:WP_007423962.1
COORDINATES: similar to AA sequence:RefSeq:WP_014005992.1
COORDINATES: similar to AA sequence:RefSeq:WP_001021752.1
plasmid maintenance postsegregational killing mechanism
COORDINATES: similar to AA sequence:RefSeq:WP_012356645.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
plasmid maintenance, postsegregational killing system
COORDINATES: similar to AA sequence:RefSeq:WP_012356644.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019448986.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018309081.1
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_003801221.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958752.1
COORDINATES: similar to AA sequence:RefSeq:WP_019689308.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958754.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958755.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958756.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003126469.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616667.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013956906.1
muconolactone Delta-isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011300518.1
GO:0018850 - chloromuconate cycloisomerase activity [Evidence IEA]; GO:0018849 - muconate cycloisomerase activity [Evidence IEA]
muconate/chloromuconate family cycloisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_007183015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012203791.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201293.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009522739.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201298.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201297.1
COORDINATES: similar to AA sequence:RefSeq:WP_009522744.1
COORDINATES: similar to AA sequence:RefSeq:WP_012355717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006576065.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588011.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519300.1
COORDINATES: protein motif:HMM:NF012870.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011296007.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_009771063.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
IS110-like element IS884 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012331186.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917058.1
COORDINATES: similar to AA sequence:RefSeq:WP_011236151.1
IS630-like element IS885 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012356497.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011617201.1
COORDINATES: similar to AA sequence:RefSeq:WP_012250522.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010809297.1
GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0008152 - metabolic process [Evidence IEA]; GO:0009853 - photorespiration [Evidence IEA]
PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (PF00702); Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012356501.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013953005.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008974 - phosphoribulokinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013953006.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013953007.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018314255.1
COORDINATES: similar to AA sequence:RefSeq:WP_011154337.1
COORDINATES: similar to AA sequence:RefSeq:WP_009521580.1
ribulose bisphosphate carboxylase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010809289.1
form I ribulose bisphosphate carboxylase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013953011.1